Standout Papers

Canu: scalable and accurate long-read a... 2004 2026 2011 2018 4.5k
  1. Canu: scalable and accurate long-read assembly via adaptive k -mer weighting and repeat separation (2017)
    Sergey Koren, Brian P. Walenz et al. Genome Research
  2. Versatile and open software for comparing large genomes (2004)
    Stefan Kurtz, Adam M. Phillippy et al. Genome biology
  3. High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries (2018)
    Chirag Jain, Luis M. Rodriguez‐R et al. Nature Communications
  4. Mash: fast genome and metagenome distance estimation using MinHash (2016)
    Brian Ondov, Todd J. Treangen et al. Genome biology
  5. Interactive metagenomic visualization in a Web browser (2011)
    Brian Ondov, Nicholas H. Bergman et al. BMC Bioinformatics
  6. MUMmer4: A fast and versatile genome alignment system (2018)
    Guillaume Marçais, Arthur L. Delcher et al. PLoS Computational Biology
  7. The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes (2014)
    Todd J. Treangen, Brian Ondov et al. Genome biology
  8. Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies (2020)
    Arang Rhie, Brian P. Walenz et al. Genome biology
  9. Hybrid error correction and de novo assembly of single-molecule sequencing reads (2012)
    Sergey Koren, Michael C. Schatz et al. Nature Biotechnology
  10. Assembling large genomes with single-molecule sequencing and locality-sensitive hashing (2015)
    Konstantin Berlin, Sergey Koren et al. Nature Biotechnology
  11. GAGE: A critical evaluation of genome assemblies and assembly algorithms (2011)
    Steven L. Salzberg, Adam M. Phillippy et al. Genome Research
  12. HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads (2020)
    Sergey Nurk, Brian P. Walenz et al. Genome Research
  13. De novo assembly of haplotype-resolved genomes with trio binning (2018)
    Sergey Koren, Arang Rhie et al. Nature Biotechnology
  14. Telomere-to-telomere assembly of diploid chromosomes with Verkko (2023)
    Mikko Rautiainen, Sergey Nurk et al. Nature Biotechnology
  15. Segmental duplications and their variation in a complete human genome (2022)
    Mitchell R. Vollger, Xavi Guitart et al. Science
  16. Epigenetic patterns in a complete human genome (2022)
    Ariel Gershman, Michael E.G. Sauria et al. Science
  17. The variation and evolution of complete human centromeres (2024)
    Glennis A. Logsdon, Allison N. Rozanski et al. Nature

Immediate Impact

13 by Nobel laureates 32 from Science/Nature 108 standout
Sub-graph 1 of 17

Citing Papers

Discovery of antimicrobial peptides in the global microbiome with machine learning
2024 Standout
Accurate proteome-wide missense variant effect prediction with AlphaMissense
2023 StandoutScienceNobel
8 intermediate papers

Works of Adam M. Phillippy being referenced

High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
2018 Standout
Interactive metagenomic visualization in a Web browser
2011 Standout
and 2 more

Author Peers

Author Last Decade Papers Cites
Adam M. Phillippy 15008 7290 5468 83 24.0k
Ivica Letunić 19198 8293 6270 47 33.2k
Aaron E. Darling 14736 7775 9319 98 33.0k
Nicole T. Perna 11543 3748 4493 58 19.5k
Daniel H. Huson 15898 7413 8156 139 31.4k
Thomas Madden 15400 6314 5689 26 28.1k
Sergey Nikolenko 10043 3616 5246 76 19.6k
Glenn Tesler 15320 6532 7488 34 27.7k
Alexander S. Kulikov 9216 3541 5037 85 18.3k
Mihai Pop 21200 5869 3949 138 30.3k
Max A. Alekseyev 10310 3987 5508 32 19.2k

All Works

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2026