Witold Dyrka

625 total citations
16 papers, 254 citations indexed

About

Witold Dyrka is a scholar working on Molecular Biology, Plant Science and Pharmacology. According to data from OpenAlex, Witold Dyrka has authored 16 papers receiving a total of 254 indexed citations (citations by other indexed papers that have themselves been cited), including 13 papers in Molecular Biology, 3 papers in Plant Science and 2 papers in Pharmacology. Recurrent topics in Witold Dyrka's work include Machine Learning in Bioinformatics (7 papers), RNA and protein synthesis mechanisms (5 papers) and Genomics and Phylogenetic Studies (4 papers). Witold Dyrka is often cited by papers focused on Machine Learning in Bioinformatics (7 papers), RNA and protein synthesis mechanisms (5 papers) and Genomics and Phylogenetic Studies (4 papers). Witold Dyrka collaborates with scholars based in Poland, France and United Kingdom. Witold Dyrka's co-authors include Sven J. Saupe, Asen Daskalov, Jean‐Christophe Nebel, David James Sherman, Pascal Durrens, Boštjan Kobe, Małgorzata Kotulska, A.T. Augousti, Annick M. Breton and Mathieu Paoletti and has published in prestigious journals such as Proceedings of the National Academy of Sciences, Journal of Molecular Biology and Scientific Reports.

In The Last Decade

Witold Dyrka

15 papers receiving 251 citations

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Witold Dyrka Poland	9	158	90	37	28	27	16	254
Sven J. Saupe France	8	177 1.1×	76 0.8×	40 1.1×	32 1.1×	55 2.0×	12	288
Julie Nemecek United States	5	221 1.4×	129 1.4×	9 0.2×	67 2.4×	20 0.7×	6	373
Markus Aebi Switzerland	10	225 1.4×	111 1.2×	53 1.4×	34 1.2×	5 0.2×	21	344
Amanda M. Cooksey United States	11	153 1.0×	48 0.5×	31 0.8×	17 0.6×	19 0.7×	17	334
Martin A. Wälti Switzerland	9	243 1.5×	105 1.2×	127 3.4×	14 0.5×	4 0.1×	10	367
Josef Hermanns Germany	10	272 1.7×	129 1.4×	8 0.2×	57 2.0×	18 0.7×	11	367
Patricia Sánchez Alonso Mexico	9	123 0.8×	59 0.7×	20 0.5×	24 0.9×	35 1.3×	37	285
Yumiko Saijo‐Hamano Japan	12	325 2.1×	35 0.4×	29 0.8×	82 2.9×	11 0.4×	19	511
Meriyem Aktas Germany	14	263 1.7×	178 2.0×	16 0.4×	26 0.9×	15 0.6×	27	458
James Tolchard France	10	120 0.8×	33 0.4×	8 0.2×	13 0.5×	35 1.3×	21	249

Countries citing papers authored by Witold Dyrka

Since Specialization

Citations

This map shows the geographic impact of Witold Dyrka's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Witold Dyrka with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Witold Dyrka more than expected).

Fields of papers citing papers by Witold Dyrka

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Witold Dyrka. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Witold Dyrka. The network helps show where Witold Dyrka may publish in the future.

Co-authorship network of co-authors of Witold Dyrka

This figure shows the co-authorship network connecting the top 25 collaborators of Witold Dyrka. A scholar is included among the top collaborators of Witold Dyrka based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Witold Dyrka. Witold Dyrka is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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16 of 16 papers shown

Gąsior‐Głogowska, Marlena, Monika Szefczyk, Andrzej Żak, et al.. (2024). Structural effects of charge destabilization and amino acid substitutions in amyloid fragments of CsgA. Spectrochimica Acta Part A Molecular and Biomolecular Spectroscopy. 313. 124094–124094.

Gąsior‐Głogowska, Marlena, et al.. (2022). Exploring a diverse world of effector domains and amyloid signaling motifs in fungal NLR proteins. PLoS Computational Biology. 18(12). e1010787–e1010787. 12 indexed citations

Clavé, Corinne, Witold Dyrka, Benoı̂t Pinson, et al.. (2022). Fungal gasdermin-like proteins are controlled by proteolytic cleavage. Proceedings of the National Academy of Sciences. 119(7). 40 indexed citations

Dyrka, Witold, et al.. (2021). Searching for universal model of amyloid signaling motifs using probabilistic context-free grammars. BMC Bioinformatics. 22(1). 222–222. 2 indexed citations

Dyrka, Witold, Virginie Coustou, Asen Daskalov, et al.. (2020). Identification of NLR-associated Amyloid Signaling Motifs in Bacterial Genomes. Journal of Molecular Biology. 432(23). 6005–6027. 20 indexed citations

Dyrka, Witold, et al.. (2019). Estimating probabilistic context-free grammars for proteins using contact map constraints. PeerJ. 7. e6559–e6559. 4 indexed citations

Marciniak, Marta Anna, et al.. (2017). Quantiprot - a Python package for quantitative analysis of protein sequences. BMC Bioinformatics. 18(1). 339–339. 6 indexed citations

Dyrka, Witold, et al.. (2016). Overlapping Podospora anserina Transcriptional Responses to Bacterial and Fungal Non Self Indicate a Multilayered Innate Immune Response. Frontiers in Microbiology. 7. 471–471. 19 indexed citations

Daskalov, Asen, Witold Dyrka, & Sven J. Saupe. (2015). Theme and variations: evolutionary diversification of the HET-s functional amyloid motif. Scientific Reports. 5(1). 12494–12494. 22 indexed citations

10.

Dyrka, Witold, Pascal Durrens, Boštjan Kobe, et al.. (2014). Diversity and Variability of NOD-Like Receptors in Fungi. Genome Biology and Evolution. 6(12). 3137–3158. 78 indexed citations

11.

Dyrka, Witold, Jean‐Christophe Nebel, & Małgorzata Kotulska. (2013). Probabilistic grammatical model for helix‐helix contact site classification. Algorithms for Molecular Biology. 8(1). 31–31. 1 indexed citations

12.

Dyrka, Witold, et al.. (2013). Optimization of 3D Poisson-Nernst-Planck model for fast evaluation of diverse protein channels. Proteins Structure Function and Bioinformatics. 81(10). 1802–1822. 9 indexed citations

13.

Dyrka, Witold, Jean‐Christophe Nebel, & Małgorzata Kotulska. (2013). Probabilistic grammatical model of protein language and its application to helix-helix contact site classification. Research Repository (Kingston University London). 1 indexed citations

14.

Dyrka, Witold & Jean‐Christophe Nebel. (2009). A stochastic context free grammar based framework for analysis of protein sequences. BMC Bioinformatics. 10(1). 323–323. 21 indexed citations

15.

Dyrka, Witold, A.T. Augousti, & Małgorzata Kotulska. (2008). Ion flux through membrane channels—An enhanced algorithm for the Poisson‐Nernst‐Planck model. Journal of Computational Chemistry. 29(12). 1876–1888. 16 indexed citations

16.

Dyrka, Witold & Jean‐Christophe Nebel. (2007). A probabilistic context-free grammar for the detection of binding sites from a protein sequence. BMC Systems Biology. 1(S1). 3 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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