Tomáš Pluskal

10.8k total citations · 2 hit papers
45 papers, 5.0k citations indexed

About

Tomáš Pluskal is a scholar working on Molecular Biology, Spectroscopy and Pharmacology. According to data from OpenAlex, Tomáš Pluskal has authored 45 papers receiving a total of 5.0k indexed citations (citations by other indexed papers that have themselves been cited), including 37 papers in Molecular Biology, 11 papers in Spectroscopy and 5 papers in Pharmacology. Recurrent topics in Tomáš Pluskal's work include Metabolomics and Mass Spectrometry Studies (18 papers), Microbial Metabolic Engineering and Bioproduction (8 papers) and Analytical Chemistry and Chromatography (7 papers). Tomáš Pluskal is often cited by papers focused on Metabolomics and Mass Spectrometry Studies (18 papers), Microbial Metabolic Engineering and Bioproduction (8 papers) and Analytical Chemistry and Chromatography (7 papers). Tomáš Pluskal collaborates with scholars based in United States, Japan and Czechia. Tomáš Pluskal's co-authors include Alejandro Villar‐Briones, Matej Orešič, Sandra Castillo, Mitsuhiro Yanagida, Jing‐Ke Weng, Michael P. Torrens-Spence, Valentina Carballo, Christopher M. Glinkerman, Taisuke Uehara and Masaru Ueno and has published in prestigious journals such as Proceedings of the National Academy of Sciences, Journal of the American Chemical Society and Chemical Society Reviews.

In The Last Decade

Tomáš Pluskal

42 papers receiving 4.9k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data

2010 2.9k citations Tomáš Pluskal, Alejandro Villar‐Briones et al. BMC Bioinformatics profile →
The Chemistry Development Kit (CDK) v2.0: atom typing, depiction, molecular formulas, and substructure searching

2017 366 citations Egon Willighagen, John W. Mayfield et al. Journal of Cheminformatics profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Tomáš Pluskal United States	25	3.4k	836	794	618	482	45	5.0k
Justin J. J. van der Hooft Netherlands	41	3.6k 1.1×	919 1.1×	634 0.8×	903 1.5×	440 0.9×	98	5.2k
Hiroshi Tsugawa Japan	31	4.6k 1.4×	1.6k 1.9×	867 1.1×	360 0.6×	838 1.7×	71	6.6k
Louis‐Félix Nothias United States	29	2.8k 0.8×	536 0.6×	594 0.7×	942 1.5×	213 0.4×	59	4.1k
Kai Dührkop Germany	18	2.5k 0.7×	943 1.1×	410 0.5×	379 0.6×	510 1.1×	29	3.6k
Mingxun Wang United States	25	2.6k 0.8×	642 0.8×	331 0.4×	665 1.1×	200 0.4×	66	3.7k
Sandra Castillo Finland	15	2.7k 0.8×	843 1.0×	456 0.6×	343 0.6×	500 1.0×	27	3.9k
Alejandro Villar‐Briones Japan	17	2.5k 0.7×	650 0.8×	495 0.6×	349 0.6×	367 0.8×	23	3.7k
Christophe Junot France	40	3.4k 1.0×	1.0k 1.3×	804 1.0×	205 0.3×	575 1.2×	125	5.9k
Richard D. Beger United States	40	3.2k 0.9×	653 0.8×	318 0.4×	298 0.5×	343 0.7×	163	5.8k
Colin A. Smith United States	20	5.4k 1.6×	1.8k 2.1×	646 0.8×	257 0.4×	847 1.8×	56	7.2k

Countries citing papers authored by Tomáš Pluskal

Since Specialization

Citations

This map shows the geographic impact of Tomáš Pluskal's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Tomáš Pluskal with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Tomáš Pluskal more than expected).

Fields of papers citing papers by Tomáš Pluskal

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Tomáš Pluskal. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Tomáš Pluskal. The network helps show where Tomáš Pluskal may publish in the future.

Co-authorship network of co-authors of Tomáš Pluskal

This figure shows the co-authorship network connecting the top 25 collaborators of Tomáš Pluskal. A scholar is included among the top collaborators of Tomáš Pluskal based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Tomáš Pluskal. Tomáš Pluskal is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Bushuiev, Roman, et al.. (2025). Self-supervised learning of molecular representations from millions of tandem mass spectra using DreaMS. Nature Biotechnology. 9 indexed citations

Dračínský, Martin, et al.. (2025). Bacterial Fluorinase FIA1 and Evolutionarily Related, Lysine-free StDUF62 Show Distinct Diastereoselectivity and Salt Sensitivity. ACS Omega. 10(20). 20509–20514.

Dračínský, Martin, Jakob K. Reinhardt, Marjorie A. Liénard, et al.. (2025). Discovery and isolation of novel capsaicinoids and their TRPV1-related activity. European Journal of Pharmacology. 999. 177700–177700.

Brungs, Corinna, Robin Schmid, Steffen Heuckeroth, et al.. (2025). MSnLib: efficient generation of open multi-stage fragmentation mass spectral libraries. Nature Methods. 22(10). 2028–2031.

Rudt, Edward, Steffen Heuckeroth, Robin Schmid, et al.. (2025). Rapid MALDI-MS/MS-Based Profiling of Lipid A Species from Gram-Negative Bacteria Utilizing Trapped Ion Mobility Spectrometry and mzmine. Analytical Chemistry. 97(14). 7781–7788. 1 indexed citations

Mutabdžija, Lana, Tito Damiani, Robin Schmid, et al.. (2024). Studying Plant Specialized Metabolites Using Computational Metabolomics Strategies. Methods in molecular biology. 2788. 97–136. 1 indexed citations

Damiani, Tito, Gerhard Thallinger, Ansgar Korf, et al.. (2023). Software and Computational Tools for LC-MS-Based Epilipidomics: Challenges and Solutions. Analytical Chemistry. 95(1). 287–303. 13 indexed citations

Fallon, Timothy, et al.. (2023). transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation. BMC Bioinformatics. 24(1). 133–133. 8 indexed citations

Du, Xiuxia, А. В. Смирнов, Tomáš Pluskal, Wei Jia, & Susan Sumner. (2020). Metabolomics Data Preprocessing Using ADAP and MZmine 2. Methods in molecular biology. 2104. 25–48. 54 indexed citations

10.

Mitchell, Andrew J., et al.. (2020). The chloroalkaloid (−)-acutumine is biosynthesized via a Fe(II)- and 2-oxoglutarate-dependent halogenase in Menispermaceae plants. Nature Communications. 11(1). 1867–1867. 55 indexed citations

11.

Levsh, Olesya, Tomáš Pluskal, Valentina Carballo, Andrew J. Mitchell, & Jing‐Ke Weng. (2019). Independent evolution of rosmarinic acid biosynthesis in two sister families under the Lamiids clade of flowering plants. Journal of Biological Chemistry. 294(42). 15193–15205. 50 indexed citations

12.

Torrens-Spence, Michael P., Valentina Carballo, Christopher M. Glinkerman, et al.. (2019). PBS3 and EPS1 Complete Salicylic Acid Biosynthesis from Isochorismate in Arabidopsis. Molecular Plant. 12(12). 1577–1586. 222 indexed citations

13.

Willighagen, Egon, John W. Mayfield, Jonathan Alvarsson, et al.. (2017). The Chemistry Development Kit (CDK) v2.0: atom typing, depiction, molecular formulas, and substructure searching. Journal of Cheminformatics. 9(1). 33–33. 366 indexed citations breakdown →

14.

Torrens-Spence, Michael P., Tomáš Pluskal, Fu‐Shuang Li, Valentina Carballo, & Jing‐Ke Weng. (2017). Complete Pathway Elucidation and Heterologous Reconstitution of Rhodiola Salidroside Biosynthesis. Molecular Plant. 11(1). 205–217. 121 indexed citations

15.

Pluskal, Tomáš & Mitsuhiro Yanagida. (2016). Metabolomic Analysis of Schizosaccharomyces pombe: Sample Preparation, Detection, and Data Interpretation. Cold Spring Harbor Protocols. 2016(12). pdb.top079921–pdb.top079921. 4 indexed citations

16.

Pluskal, Tomáš, Takahiro Nakamura, & Mitsuhiro Yanagida. (2016). Preparation of Intracellular Metabolite Extracts from Liquid Schizosaccharomyces pombe Cultures. Cold Spring Harbor Protocols. 2016(12). pdb.prot091553–pdb.prot091553. 3 indexed citations

17.

Shah, Meera, Dan Su, Judith Scheliga, et al.. (2016). A Transcript-Specific eIF3 Complex Mediates Global Translational Control of Energy Metabolism. Cell Reports. 16(7). 1891–1902. 49 indexed citations

18.

Chaleckis, Romanas, Masahiro Ebe, Tomáš Pluskal, et al.. (2014). Unexpected similarities between the Schizosaccharomyces and human blood metabolomes, and novel human metabolites. Molecular BioSystems. 10(10). 2538–2551. 44 indexed citations

19.

Pluskal, Tomáš, et al.. (2011). Specific biomarkers for stochastic division patterns and starvation‐induced quiescence under limited glucose levels in fission yeast. FEBS Journal. 278(8). 1299–1315. 65 indexed citations

20.

Pluskal, Tomáš, Takahiro Nakamura, Alejandro Villar‐Briones, & Mitsuhiro Yanagida. (2009). Metabolic profiling of the fission yeast S. pombe : quantification of compounds under different temperatures and genetic perturbation. Molecular BioSystems. 6(1). 182–198. 68 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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