Tinyi Chu

3.1k citations

20 papers · 1.9k indexed · 2 hit papers · h-index 13

Impact in

Biological Psychiatry top 5%
Neurology top 2%
- Neuroinflammation and Neurodegeneration Mechanisms

Papers in ⓘ

Biological Psychiatry 1
Toxicology 1

Co-authors: Charles G. Danko (11 shared papers)Walter Beech (2 shared papers)Oliver J. Ubeda (2 shared papers)Greg M. Cole (2 shared papers)Bruce Teter (2 shared papers)Giselle P. Lim (2 shared papers)Sally A. Frautschy (2 shared papers)Zhong Wang (4 shared papers)
Journals: Nature Genetics (2 papers)Nature Cancer (1 paper)Cancer Research (1 paper)Neurobiology of Disease (1 paper)Journal of Neuroscience (1 paper)
Partner nations: United States China Finland

In The Last Decade

Tinyi Chu

18 papers receiving 1.8k citations

Hit Papers

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Cell type and gene expression deconvolution with BayesPrism enables Bayesian integrative analysis across bulk and single-cell RNA sequencing in oncology 2022 · 242 citations

Peers

Countries citing papers authored by Tinyi Chu

Since Specialization

Citations

This map shows the geographic impact of Tinyi Chu's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Tinyi Chu with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Tinyi Chu more than expected).

Fields of papers citing papers by Tinyi Chu

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Tinyi Chu. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Tinyi Chu. The network helps show where Tinyi Chu may publish in the future.

Co-authors

The 25 scholars most cited alongside Tinyi Chu, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Tinyi Chu Line = papers co-authored together Tinyi Chu links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	Ibuprofen Suppresses Plaque Pathology and Inflammation in a Mouse Model for Alzheimer's Disease Journal of Neuroscience ·Giselle P. Lim, Fu Yang, Tinyi Chu, Pisin Chen, Walter Beech, Bruce Teter, Thuy Tran, Oliver J. Ubeda, Karen H. Ashe, Sally A. Frautschy, Greg M. Cole Hit paper breakdown →	2000	741
2	Cell type and gene expression deconvolution with BayesPrism enables Bayesian integrative analysis across bulk and single-cell RNA sequencing in oncology Nature Cancer ·Tinyi Chu, Zhong Wang, Dana Pe’er, Charles G. Danko Hit paper breakdown →	2022	242
3	The demethylenation of methylenedioxymethamphetamine (“ecstasy”) by debrisoquine hydroxylase (CYP2D6) Biochemical Pharmacology ·Geoffrey T. Tucker, M. S. Lennard, S. W. Ellis, H. F. Woods, A.K. Cho, L.Y. Lin, Atsunori Hiratsuka, Debra A. Schmitz, Tinyi Chu	1994	193
4	Selective inhibition of Aβ42 production by NSAID R‐enantiomers Journal of Neurochemistry ·Takashi Morihara, Tinyi Chu, Oliver J. Ubeda, Walter Beech, G. M. Cole	2002	122
5	Transcriptional response to stress is pre-wired by promoter and enhancer architecture Nature Communications ·Anniina Vihervaara, Dig Bijay Mahat, Michael J. Guertin, Tinyi Chu, Charles G. Danko, John T. Lis, Lea Sistonen	2017	107
6	Curcumin restores innate immune Alzheimer's disease risk gene expression to ameliorate Alzheimer pathogenesis Neurobiology of Disease ·Bruce Teter, Takashi Morihara, Giselle P. Lim, Tinyi Chu, Mychica Jones, Xiaohong Zuo, Rebecca Paul, Sally A. Frautschy, Greg M. Cole	2019	91
7	Lymphatics act as a signaling hub to regulate intestinal stem cell activity Cell stem cell ·Rachel Niec, Tinyi Chu, Marina Schernthanner, Shiri Gur‐Cohen, Lynette Hidalgo, H. Amalia Pasolli, Kathleen Luckett, Zhong Wang, Sohni Ria Bhalla, Francesco Cambuli, Raghu P. Kataru, Karuna Ganesh, Babak J. Mehrara, Dana Pe’er, Elaine Fuchs	2022	80
8	Chromatin run-on and sequencing maps the transcriptional regulatory landscape of glioblastoma multiforme Nature Genetics ·Tinyi Chu, Edward J. Rice, Gregory T. Booth, H. Hans Salamanca, Zhong Wang, Leighton J. Core, Sharon L. Longo, Robert J. Corona, Lawrence S. Chin, John T. Lis, Hojoong Kwak, Charles G. Danko	2018	72
9	Identification of regulatory elements from nascent transcription using dREG Genome Research ·Zhong Wang, Tinyi Chu, Lauren A. Choate, Charles G. Danko	2018	58
10	Prediction of histone post-translational modification patterns based on nascent transcription data Nature Genetics ·Zhong Wang, Alexandra G. Chivu, Lauren A. Choate, Edward J. Rice, Donald C. Miller, Tinyi Chu, Shao‐Pei Chou, Nicole B. Kingsley, Jessica L. Petersen, Carrie J. Finno, Rebecca R. Bellone, Douglas F. Antczak, John T. Lis, Charles G. Danko	2022	55
11	Dynamic evolution of regulatory element ensembles in primate CD4+ T cells Nature Ecology & Evolution ·Charles G. Danko, Lauren A. Choate, Brooke A. Marks, Edward J. Rice, Zhong Wang, Tinyi Chu, André L. Martins, Noah Dukler, Scott A. Coonrod, Elia D. Tait Wojno, John T. Lis, W. Lee Kraus, Adam Siepel	2018	43
12	Discovering Transcriptional Regulatory Elements From Run‐On and Sequencing Data Using the Web‐Based dREG Gateway Current Protocols in Bioinformatics ·Tinyi Chu, Zhong Wang, Shao‐Pei Chou, Charles G. Danko	2018	17
13	Physical confinement induces malignant transformation in mammary epithelial cells Biomaterials ·Yen‐Chun Lu, Tinyi Chu, Matthew S. Hall, Dah‐Jiun Fu, Quanming Shi, Alan Chiu, Duo An, Long‐Hai Wang, Yehudah Pardo, Teresa Southard, Charles G. Danko, Jan Liphardt, Alexander Yu. Nikitin, Mingming Wu, Claudia Fischbach, Scott A. Coonrod, Minglin Ma	2019	13
14	The ribosomal maturation factor P from Mycobacterium smegmatis facilitates the ribosomal biogenesis by binding to the small ribosomal protein S12 Journal of Biological Chemistry ·Tinyi Chu, Xing Weng, Carmen Oi Kwan Law, Hoi Kuan Kong, Jeffrey Kwan-Yiu Lau, Sheila Li, Hoa Quynh Pham, Rui Wang, Liang Zhang, Richard Yi Tsun Kao, Kwok‐Fai Lau, Jacky Chi Ki Ngo, Terrence Chi‐Kong Lau	2018	12
15	A bi-stable feedback loop between GDNF, EGR1, and ERα contribute to endocrine resistant breast cancer PLoS ONE ·Sachi Horibata, Edward J. Rice, Hui Zheng, Chinatsu Mukai, Tinyi Chu, Brooke A. Marks, Scott A. Coonrod, Charles G. Danko	2018	5
16	Building a Science Gateway For Processing and Modeling Sequencing Data Via Apache Airavata PubMed ·Zhong Wang, Marcus Christie, Eroma Abeysinghe, Tinyi Chu, Suresh Marru, Marlon Pierce, Charles G. Danko	2018	5
17	Funmap2: an R package for QTL mapping using longitudinal phenotypes PeerJ ·Nating Wang, Tinyi Chu, Jiangtao Luo, Rongling Wu, Zhong Wang	2019	2
18	dHICA: a deep transformer-based model enables accurate histone imputation from chromatin accessibility Briefings in Bioinformatics ·Wen Wen, Jiaxin Zhong, Zhaoxi Zhang, Lijuan Jia, Tinyi Chu, Nating Wang, Charles G. Danko, Zhong Wang	2024	2
19	Urine Cell-Free RNA vs Plasma Cell-Free RNA for Monitoring of Kidney Injury and Immune Complications Clinical Chemistry ·Omary Mzava, Glory Feyisayo Agun, Conor Loy, Isabel H Gonzalez-Bocco, Liz-Audrey Djomnang Kounatse, Andrew Bliss, Sophia L. Wells, Joan Sesing Lenz, E. H. Belcher, Kaiwen Chen, Sophia Koo, Lindsey R. Baden, Tinyi Chu, Matthew P. Cheng, Jerome Ritz, Shruti Gupta, Iwijn De Vlaminck	2025	0
20	Transcriptomic Plasticity is a Hallmark of Metastatic Pancreatic Cancer Cancer Research ·Alejandro Jiménez-Sánchez, Sitara Persad, Akimasa Hayashi, Shigeaki Umeda, Roshan Sharma, Yubin Xie, Arnav Mehta, Wungki Park, Ignas Masilionis, Tinyi Chu, Feiyang Zhu, Jungeui Hong, Ronan Chaligné, Eileen M. O’Reilly, Linas Mažutis, Tal Nawy, Itsik Pe’er, Christine A. Iacobuzio–Donahue, Dana Pe’er	2025	0

About Tinyi Chu

Tinyi Chu is a scholar working on Biological Psychiatry, Toxicology, Cancer Research, Neurology and Molecular Biology, having authored 20 papers that have together received 1.9k indexed citations. Recurring topics across this work include Genomics and Chromatin Dynamics (7 papers), RNA and protein synthesis mechanisms (5 papers), Alzheimer's disease research and treatments (3 papers), Genomics and Phylogenetic Studies (3 papers), RNA Research and Splicing (3 papers), RNA modifications and cancer (3 papers), Single-cell and spatial transcriptomics (2 papers) and Cancer Cells and Metastasis (2 papers). The work is most often cited by research in Biological Psychiatry (119 citations), Neurology (364 citations), Toxicology (149 citations), Physiology (659 citations) and Pharmacology (348 citations). Tinyi Chu has collaborated with scholars based in United States, China and Finland. Frequent co-authors include Charles G. Danko, Walter Beech, Oliver J. Ubeda, Greg M. Cole, Bruce Teter, Giselle P. Lim, Sally A. Frautschy, Zhong Wang, Pisin Chen and Thuy Tran. Their work appears in journals such as Nature Genetics, Nature Cancer, Cancer Research, Neurobiology of Disease and Journal of Neuroscience.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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