Tie Koide

1.2k citations

38 papers · 825 indexed · h-index 17

Impact in

Horticulture top 5%
Molecular Biology
- Genomics and Phylogenetic Studies
- RNA and protein synthesis mechanisms
- Microbial Metabolic Engineering and Bioproduction

Papers in ⓘ

Molecular Biology 26
- Genomics and Phylogenetic Studies 13
- RNA and protein synthesis mechanisms 9
- Bioinformatics and Genomic Networks 5
- Microbial Metabolic Engineering and Bioproduction 4
Genetics 10
- Bacterial Genetics and Biotechnology 8

Co-authors: Ricardo Z. N. Vêncio (13 shared papers)Suely Lopes Gomes (10 shared papers)Nitin S. Baliga (9 shared papers)Marilis V. Marques (10 shared papers)David J. Reiss (5 shared papers)Wyming Lee Pang (3 shared papers)Min Pan (4 shared papers)Amy Schmid (3 shared papers)
Journals: Journal of Bacteriology (4 papers)RNA Biology (2 papers)BMC Bioinformatics (2 papers)Genes (2 papers)Molecular Systems Biology (2 papers)
Partner nations: Brazil United States Norway

In The Last Decade

Tie Koide

36 papers receiving 816 citations

Peers

Countries citing papers authored by Tie Koide

Since Specialization

Citations

This map shows the geographic impact of Tie Koide's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Tie Koide with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Tie Koide more than expected).

Fields of papers citing papers by Tie Koide

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Tie Koide. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Tie Koide. The network helps show where Tie Koide may publish in the future.

Co-authors

The 25 scholars most cited alongside Tie Koide, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Tie Koide Line = papers co-authored together Tie Koide links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

Showing the 20 most-cited of 38 papers — load more, or switch the sort, to bring in the rest.

#	Work
1	Prevalence of transcription promoters within archaeal operons and coding sequences Molecular Systems Biology ·Tie Koide, David J. Reiss, J Christopher Bare, Wyming Lee Pang, Marc T. Facciotti, Amy Schmid, Min Pan, Bruz Marzolf, Phu T. Van, Fang‐Yin Lo, Abhishek Pratap, Eric W. Deutsch, Amelia C. Peterson, Dan Martin, Nitin S. Baliga	2009	101
2	DNA Microarray-Based Genome Comparison of a Pathogenic and a Nonpathogenic Strain of Xylella fastidiosa Delineates Genes Important for Bacterial Virulence Journal of Bacteriology ·Tie Koide, Paulo A. Zaini, Leandro Márcio Moreira, Ricardo Z. N. Vêncio, Adriana Yamaguti Matsukuma, Alan Mitchell Durham, D. C. Teixeira, Hamza El‐Dorry, Patrícia Brant Monteiro, Ana Cláudia R. da Silva, Sergio Verjovski‐Almeida, Aline Maria da Silva, Suely Lopes Gomes	2004	61
3	ATP- and antizyme-dependent endoproteolysis of ornithine decarboxylase to oligopeptides by the 26 S proteasome Journal of Biological Chemistry ·Fuminori Tokunaga, Takahiro Goto, Tie Koide, Yasuko Murakami, Shinichi Hayashi, Tomohiro Tamura, Keiji Tanaka, Akira Ichihara	1994	50
4	A single transcription factor regulates evolutionarily diverse but functionally linked metabolic pathways in response to nutrient availability Molecular Systems Biology ·Amy Schmid, David J. Reiss, Min Pan, Tie Koide, Nitin S. Baliga	2009	47
5	BayGO: Bayesian analysis of ontology term enrichment in microarray data BMC Bioinformatics ·Ricardo Z. N. Vêncio, Tie Koide, Suely Lopes Gomes, Carlos Alberto de Bragança Pereira	2006	46
6	The role of predictive modelling in rationally re-engineering biological systems Nature Reviews Microbiology ·Tie Koide, Wyming Lee Pang, Nitin S. Baliga	2009	44
7	Gsk3β and Tomm20 are substrates of the SCFFbxo7/PARK15 ubiquitin ligase associated with Parkinson's disease Biochemical Journal ·Felipe R. Teixeira, Suzanne J. Randle, Shachi P. Patel, Tycho E.T. Mevissen, Grasilda Zenkevičiūtė, Tie Koide, David Komander, Heike Laman	2016	40
8	HTself: Self-Self Based Statistical Test for Low Replication Microarray Studies DNA Research ·Ricardo Z. N. Vêncio, Tie Koide	2005	39
9	Halobacterium salinarum NRC-1 PeptideAtlas: Toward Strategies for Targeted Proteomics and Improved Proteome Coverage Journal of Proteome Research ·Phu T. Van, Amy Schmid, Nichole L. King, Amardeep Kaur, Min Pan, Kenia Whitehead, Tie Koide, Marc T. Facciotti, Young Ah Goo, Eric W. Deutsch, David J. Reiss, Parag Mallick, Nitin S. Baliga	2008	38
10	Global Gene Expression Analysis of the Heat Shock Response in the Phytopathogen Xylella fastidiosa Journal of Bacteriology ·Tie Koide, Ricardo Z. N. Vêncio, Suely Lopes Gomes	2006	33
11	Iron Deficiency Generates Oxidative Stress and Activation of the SOS Response in Caulobacter crescentus Frontiers in Microbiology ·Laura Leaden, Larissa Gomes Silva, Rodolfo A. Ribeiro, Naara M. dos Santos, Alan P. R. Lorenzetti, Thiago Gerônimo Pires Alegria, Mariane Leichsenring Schulz, Marisa Helena Gennari de Medeiros, Tie Koide, Marilis V. Marques	2018	29
12	Integration and visualization of systems biology data in context of the genome BMC Bioinformatics ·J Christopher Bare, Tie Koide, David J. Reiss, Dan Tenenbaum, Nitin S. Baliga	2010	26
13	The Single Extracytoplasmic-Function Sigma Factor of Xylella fastidiosa Is Involved in the Heat Shock Response and Presents an Unusual Regulatory Mechanism Journal of Bacteriology ·José F. da Silva Neto, Tie Koide, Suely Lopes Gomes, Marilis V. Marques	2006	24
14	Large scale physiological readjustment during growth enables rapid, comprehensive and inexpensive systems analysis BMC Systems Biology ·Marc T. Facciotti, Wyming Lee Pang, Fang-Yin Lo, Kenia Whitehead, Tie Koide, Kenichi Masumura, Min Pan, Amardeep Kaur, David J. Larsen, David J. Reiss, Linh Hoang, Ewa Kalisiak, Trent R. Northen, Sunia A. Trauger, Gary Siuzdak, Nitin S. Baliga	2010	22
15	Site-directed gene disruption inXylella fastidiosa FEMS Microbiology Letters ·JosÃ© F Silva Neto, Tie Koide, Suely Lopes Gomes, Marilis V. Marques	2002	20
16	Role of σ54 in the regulation of genes involved in type I and type IV pili biogenesis in Xylella fastidiosa Archives of Microbiology ·José F. da Silva Neto, Tie Koide, Cecília M. Abe, Suely Lopes Gomes, Marilis V. Marques	2007	19
17	Sense overlapping transcripts in IS1341-type transposase genes are functional non-coding RNAs in archaea RNA Biology ·José Vicente Gomes‐Filho, Lívia S. Zaramela, Valéria Cristina Da Silva Italiani, Nitin S. Baliga, Ricardo Z. N. Vêncio, Tie Koide	2015	18
18	Cellular Basis for Protein C Deficiency Caused by a Single Amino Acid Substitution at Argl5 in the -Carboxyglutamic Acid Domain The Journal of Biochemistry ·Fuminori Tokunaga, Tatsuya Tsukamoto, Tie Koide	1996	16
19	The F-box Protein FBXO25 Promotes the Proteasome-dependent Degradation of ELK-1 Protein Journal of Biological Chemistry ·Felipe R. Teixeira, Adriana Oliveira Manfiolli, Cláudia S. Soares, Munira Muhammad Abdel Baqui, Tie Koide, Marcelo D. Gomes	2013	15
20	Internal RNAs overlapping coding sequences can drive the production of alternative proteins in archaea RNA Biology ·Felipe ten-Caten, Ricardo Z. N. Vêncio, Alan P. R. Lorenzetti, Lívia S. Zaramela, Ana Carolina Santana, Tie Koide	2018	14

About Tie Koide

Tie Koide is a scholar working on Molecular Biology, Genetics, Plant Science, Ecology and Horticulture, having authored 38 papers that have together received 825 indexed citations. Recurring topics across this work include Genomics and Phylogenetic Studies (13 papers), RNA and protein synthesis mechanisms (9 papers), Bacterial Genetics and Biotechnology (8 papers), Phytoplasmas and Hemiptera pathogens (7 papers), Plant Pathogenic Bacteria Studies (6 papers), Bioinformatics and Genomic Networks (5 papers), Bacteriophages and microbial interactions (4 papers) and Microbial Metabolic Engineering and Bioproduction (4 papers). The work is most often cited by research in Horticulture (43 citations), Molecular Biology (555 citations), Genetics (168 citations), Plant Science (179 citations) and Ecology (113 citations). Tie Koide has collaborated with scholars based in Brazil, United States and Norway. Frequent co-authors include Ricardo Z. N. Vêncio, Suely Lopes Gomes, Nitin S. Baliga, Marilis V. Marques, David J. Reiss, Wyming Lee Pang, Min Pan, Amy Schmid, José F. da Silva Neto and Fuminori Tokunaga. Their work appears in journals such as Journal of Bacteriology, RNA Biology, BMC Bioinformatics, Genes and Molecular Systems Biology.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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