Thomas Keane

92.5k total citations · 3 hit papers
83 papers, 11.4k citations indexed

About

Thomas Keane is a scholar working on Molecular Biology, Genetics and Plant Science. According to data from OpenAlex, Thomas Keane has authored 83 papers receiving a total of 11.4k indexed citations (citations by other indexed papers that have themselves been cited), including 60 papers in Molecular Biology, 23 papers in Genetics and 22 papers in Plant Science. Recurrent topics in Thomas Keane's work include Genomics and Phylogenetic Studies (32 papers), Chromosomal and Genetic Variations (17 papers) and RNA and protein synthesis mechanisms (15 papers). Thomas Keane is often cited by papers focused on Genomics and Phylogenetic Studies (32 papers), Chromosomal and Genetic Variations (17 papers) and RNA and protein synthesis mechanisms (15 papers). Thomas Keane collaborates with scholars based in United Kingdom, United States and Ireland. Thomas Keane's co-authors include Petr Danecek, Robert M. Davies, James Bonfield, Heng Li, John Marshall, Andrew Whitwham, Valeriu Ohan, Shane McCarthy, Martin Pollard and Jennifer Liddle and has published in prestigious journals such as Nature, Proceedings of the National Academy of Sciences and Nucleic Acids Research.

In The Last Decade

Thomas Keane

78 papers receiving 11.3k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Twelve years of SAMtools and BCFtools

2021 6.3k citations Petr Danecek, James Bonfield et al. GigaScience profile →
Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified

2006 935 citations Thomas Keane, Thomas J. Naughton et al. profile →
HTSlib: C library for reading/writing high-throughput sequencing data

2021 220 citations James Bonfield, John Marshall et al. GigaScience profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Thomas Keane United Kingdom	37	6.3k	3.0k	2.5k	1.4k	886	83	11.4k
Huanming Yang China	54	8.6k 1.4×	3.0k 1.0×	2.7k 1.1×	1.3k 1.0×	1.2k 1.4×	335	14.0k
Ioana Cutcutache Singapore	10	5.4k 0.9×	2.1k 0.7×	2.9k 1.2×	1.5k 1.1×	705 0.8×	19	11.7k
Maido Remm Estonia	31	6.5k 1.0×	2.9k 0.9×	3.2k 1.3×	1.5k 1.1×	525 0.6×	93	12.7k
Anton Nekrutenko United States	38	9.4k 1.5×	2.2k 0.7×	2.2k 0.9×	1.7k 1.3×	1.1k 1.3×	87	14.6k
James Bonfield United Kingdom	17	4.8k 0.8×	2.3k 0.8×	2.0k 0.8×	1.2k 0.9×	615 0.7×	19	9.2k
Brent Ewing United States	11	6.3k 1.0×	2.4k 0.8×	2.7k 1.1×	1.7k 1.3×	471 0.5×	16	10.9k
Michèle Clamp United Kingdom	17	8.2k 1.3×	2.2k 0.7×	2.5k 1.0×	1.2k 0.9×	418 0.5×	20	12.2k
Shane McCarthy United Kingdom	19	4.5k 0.7×	2.9k 1.0×	1.9k 0.8×	1.0k 0.7×	675 0.8×	52	9.1k
Jianzhi Zhang United States	71	10.4k 1.7×	5.0k 1.7×	2.7k 1.1×	998 0.7×	835 0.9×	303	17.4k
Andreas Untergasser Germany	15	4.6k 0.7×	2.0k 0.7×	3.0k 1.2×	1.2k 0.9×	507 0.6×	17	10.1k

Countries citing papers authored by Thomas Keane

Since Specialization

Citations

This map shows the geographic impact of Thomas Keane's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Thomas Keane with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Thomas Keane more than expected).

Fields of papers citing papers by Thomas Keane

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Thomas Keane. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Thomas Keane. The network helps show where Thomas Keane may publish in the future.

Co-authorship network of co-authors of Thomas Keane

This figure shows the co-authorship network connecting the top 25 collaborators of Thomas Keane. A scholar is included among the top collaborators of Thomas Keane based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Thomas Keane. Thomas Keane is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

Tsukanov, Kirill, et al.. (2024). CMAT: ClinVar Mapping and Annotation Toolkit. Bioinformatics Advances. 4(1). vbae018–vbae018.

Zhao, Wenming, Iván F. Acosta, Francis Alonzo, et al.. (2024). IFI207, a young and fast‐evolving protein, controls retroviral replication via the STING pathway. mBio. 15(7). e0120924–e0120924. 2 indexed citations

Thakur, Matthew, Alex Bateman, Cath Brooksbank, et al.. (2022). EMBL’s European Bioinformatics Institute (EMBL-EBI) in 2022. Nucleic Acids Research. 51(D1). D9–D17. 30 indexed citations

Bonfield, James, John Marshall, Petr Danecek, et al.. (2021). HTSlib: C library for reading/writing high-throughput sequencing data. GigaScience. 10(2). 220 indexed citations breakdown →

Cezard, Timothée, Fiona Cunningham, Sarah Hunt, et al.. (2021). The European Variation Archive: a FAIR resource of genomic variation for all species. Nucleic Acids Research. 50(D1). D1216–D1220. 62 indexed citations

Danecek, Petr, James Bonfield, Jennifer Liddle, et al.. (2021). Twelve years of SAMtools and BCFtools. GigaScience. 10(2). 6307 indexed citations breakdown →

Lindsay, Sarah, Raheleh Rahbari, Joanna Kaplanis, Thomas Keane, & Matthew E. Hurles. (2019). Similarities and differences in patterns of germline mutation between mice and humans. Nature Communications. 10(1). 4053–4053. 78 indexed citations

Ibarra-Soria, Ximena, Thiago S. Nakahara, Jingtao Lilue, et al.. (2017). Variation in olfactory neuron repertoires is genetically controlled and environmentally modulated. eLife. 6. 63 indexed citations

Puddu, Fabio, Ilaria Guerini, Hengyao Niu, et al.. (2015). Synthetic viability genomic screening defines Sae2 function in DNA repair. The EMBO Journal. 34(11). 1509–1522. 36 indexed citations

10.

Ryder, Edward J., Kim Wong, Diane Gleeson, et al.. (2013). Genomic analysis of a novel spontaneous albino C57BL/6N mouse strain. genesis. 51(7). 523–528. 2 indexed citations

11.

Collins, Cassandra, Thomas Keane, Daniel J. Turner, et al.. (2013). Genomic and Proteomic Dissection of the Ubiquitous Plant Pathogen, Armillaria mellea: Toward a New Infection Model System. Journal of Proteome Research. 12(6). 2552–2570. 75 indexed citations

12.

Takada, Toyoyuki, Hideki Noguchi, Thomas Keane, et al.. (2013). The ancestor of extant Japanese fancy mice contributed to the mosaic genomes of classical inbred strains. Genome Research. 23(8). 1329–1338. 75 indexed citations

13.

Weyden, Louise van der, Alistair G. Rust, Rebecca E. McIntyre, et al.. (2012). Jdp2 downregulates Trp53 transcription to promote leukaemogenesis in the context of Trp53 heterozygosity. Oncogene. 32(3). 397–402. 19 indexed citations

14.

Warimwe, George M., Thomas Keane, Greg Fegan, et al.. (2009). Plasmodium falciparum var gene expression is modified by host immunity. Proceedings of the National Academy of Sciences. 106(51). 21801–21806. 107 indexed citations

15.

McCormack, Grace P., Judith R. Glynn, Jonathan P. Clewley, et al.. (2006). Emergence of a Three Codon Deletion in gag p17 in HIV Type 1 Subtype C Long-Term Survivors, and General Population Spread. AIDS Research and Human Retroviruses. 22(2). 195–201. 5 indexed citations

16.

Page, Andrew J., Shirley Coyle, Thomas Keane, et al.. (2006). Distributed Monte Carlo simulation of light transportation in tissue. Maynooth University ePrints and eTheses Archive (Maynooth University). 2604. 4 pp.–4 pp.. 6 indexed citations

17.

Page, Andrew J., Thomas Keane, Richard A. Allen, Thomas J. Naughton, & John Waldron. (2003). Multi-tiered distributed computing platform. 191–194. 3 indexed citations

18.

Keane, Thomas, Richard A. Allen, Thomas J. Naughton, James O. McInerney, & John Waldron. (2003). Distributed Java platform with programmable MIMD capabilities. Lecture notes in computer science. 122–131. 6 indexed citations

19.

Frost, David E., et al.. (1988). Evaluation of hydroxylapatite particles in repair of alveolar clefts in dogs. Journal of Oral and Maxillofacial Surgery. 46(4). 290–296. 17 indexed citations

20.

Keane, Thomas, et al.. (1970). Hemifacial palsy after inferior dental block for dental treatment.. BMJ. 1(5699). 798–798. 22 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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