Summer B. Thyme

4.5k total citations · 2 hit papers
32 papers, 2.2k citations indexed

About

Summer B. Thyme is a scholar working on Molecular Biology, Cell Biology and Genetics. According to data from OpenAlex, Summer B. Thyme has authored 32 papers receiving a total of 2.2k indexed citations (citations by other indexed papers that have themselves been cited), including 27 papers in Molecular Biology, 12 papers in Cell Biology and 7 papers in Genetics. Recurrent topics in Summer B. Thyme's work include Zebrafish Biomedical Research Applications (12 papers), CRISPR and Genetic Engineering (11 papers) and RNA and protein synthesis mechanisms (10 papers). Summer B. Thyme is often cited by papers focused on Zebrafish Biomedical Research Applications (12 papers), CRISPR and Genetic Engineering (11 papers) and RNA and protein synthesis mechanisms (10 papers). Summer B. Thyme collaborates with scholars based in United States, Switzerland and Norway. Summer B. Thyme's co-authors include Eivind Valen, Tessa G. Montague, James A. Gagnon, Alexander F. Schier, Kornel Labun, Constance Richter, Andrea Pauli, Steven Zimmerman, Peng Huang and David Baker and has published in prestigious journals such as Nature, Cell and Proceedings of the National Academy of Sciences.

In The Last Decade

Summer B. Thyme

28 papers receiving 2.2k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

CHOPCHOP v2: a web tool for the next generation of CRISPR genome engineering

2016 646 citations Kornel Labun, Tessa G. Montague et al. Nucleic Acids Research profile →
Efficient Mutagenesis by Cas9 Protein-Mediated Oligonucleotide Insertion and Large-Scale Assessment of Single-Guide RNAs

2014 634 citations James A. Gagnon, Eivind Valen et al. PLoS ONE profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Summer B. Thyme United States	14	1.7k	415	372	218	173	32	2.2k
Woong Y. Hwang United States	10	2.4k 1.4×	643 1.5×	608 1.6×	187 0.9×	224 1.3×	14	2.9k
J. Timothy Westwood Canada	26	2.1k 1.2×	330 0.8×	289 0.8×	231 1.1×	199 1.2×	39	2.6k
Jian‐Quan Ni China	23	1.5k 0.8×	273 0.7×	235 0.6×	242 1.1×	258 1.5×	44	1.9k
Bettina A. Moser United States	27	2.0k 1.2×	636 1.5×	158 0.4×	253 1.2×	212 1.2×	50	2.5k
Benjamin E. Housden United States	22	2.8k 1.6×	439 1.1×	203 0.5×	235 1.1×	265 1.5×	43	3.2k
Fillip Port Germany	16	1.8k 1.0×	270 0.7×	564 1.5×	307 1.4×	272 1.6×	23	2.3k
Mary A. Lilly United States	26	1.7k 1.0×	422 1.0×	646 1.7×	166 0.8×	414 2.4×	39	2.3k
Antoine Guichet France	22	1.6k 0.9×	311 0.7×	847 2.3×	105 0.5×	267 1.5×	43	2.0k
Justin P. Kumar United States	26	1.8k 1.0×	350 0.8×	499 1.3×	152 0.7×	126 0.7×	65	2.3k
Helen K. Salz United States	25	1.5k 0.9×	689 1.7×	200 0.5×	203 0.9×	181 1.0×	39	2.0k

Countries citing papers authored by Summer B. Thyme

Since Specialization

Citations

This map shows the geographic impact of Summer B. Thyme's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Summer B. Thyme with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Summer B. Thyme more than expected).

Fields of papers citing papers by Summer B. Thyme

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Summer B. Thyme. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Summer B. Thyme. The network helps show where Summer B. Thyme may publish in the future.

Co-authorship network of co-authors of Summer B. Thyme

This figure shows the co-authorship network connecting the top 25 collaborators of Summer B. Thyme. A scholar is included among the top collaborators of Summer B. Thyme based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Summer B. Thyme. Summer B. Thyme is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

Thyme, Summer B., et al.. (2025). Disrupted diencephalon development and neuropeptidergic pathways in zebrafish with autism-risk mutations. Proceedings of the National Academy of Sciences. 122(23). e2402557122–e2402557122. 4 indexed citations

Mosimann, Christian, et al.. (2025). Genetic context of transgene insertion can influence neurodevelopment in zebrafish. Genetics. 231(3).

Kim, Hyun-Taek, et al.. (2024). Impairments of cerebellar structure and function in a zebrafish KO of neuropsychiatric risk gene znf536. Translational Psychiatry. 14(1). 82–82. 7 indexed citations

Harrison, Devin, Eric Prinssen, Mark Rogers‐Evans, et al.. (2023). Behavioral analysis through the lifespan of disc1 mutant zebrafish identifies defects in sensorimotor transformation. iScience. 26(7). 107099–107099. 4 indexed citations

Pandey, Shristi, et al.. (2023). A single-cell transcriptome atlas of the maturing zebrafish telencephalon. Genome Research. 33(4). 658–671. 18 indexed citations

Hsieh, Shan-Chi, Jagat B. Budhathoki, Summer B. Thyme, et al.. (2023). Multiple adaptations underly co-option of a CRISPR surveillance complex for RNA-guided DNA transposition. Molecular Cell. 83(11). 1827–1838.e6. 11 indexed citations

McGraw, Christopher M., et al.. (2022). Mosaic and non-mosaic protocadherin 19 mutation leads to neuronal hyperexcitability in zebrafish. Neurobiology of Disease. 169. 105738–105738. 10 indexed citations

Joo, William, et al.. (2021). A Customizable Low-Cost System for Massively Parallel Zebrafish Behavioral Phenotyping. Frontiers in Behavioral Neuroscience. 14. 606900–606900. 20 indexed citations

Thyme, Summer B., Lindsey M. Pieper, Shristi Pandey, et al.. (2019). Phenotypic Landscape of Schizophrenia-Associated Genes Defines Candidates and Their Shared Functions. Cell. 177(2). 478–491.e20. 143 indexed citations

10.

Escamilla, Christine Ochoa, Angela K. Walker, Zhong Xuan, et al.. (2017). Kctd13 deletion reduces synaptic transmission via increased RhoA. Nature. 551(7679). 227–231. 94 indexed citations

11.

Thyme, Summer B. & Yifan Song. (2016). Computational Design of DNA-Binding Proteins. Methods in molecular biology. 1414. 265–283. 1 indexed citations

12.

Thyme, Summer B. & Alexander F. Schier. (2016). Polq-Mediated End Joining Is Essential for Surviving DNA Double-Strand Breaks during Early Zebrafish Development. Cell Reports. 15(4). 707–714. 62 indexed citations

13.

Labun, Kornel, Tessa G. Montague, James A. Gagnon, Summer B. Thyme, & Eivind Valen. (2016). CHOPCHOP v2: a web tool for the next generation of CRISPR genome engineering. Nucleic Acids Research. 44(W1). W272–W276. 646 indexed citations breakdown →

14.

Thyme, Summer B., Yifan Song, TJ Brunette, et al.. (2014). Massively parallel determination and modeling of endonuclease substrate specificity. Nucleic Acids Research. 42(22). 13839–13852. 8 indexed citations

15.

Thyme, Summer B. & David Baker. (2014). Redesigning the Specificity of Protein–DNA Interactions with Rosetta. Methods in molecular biology. 1123. 265–282. 11 indexed citations

16.

Gagnon, James A., Eivind Valen, Summer B. Thyme, et al.. (2014). Efficient Mutagenesis by Cas9 Protein-Mediated Oligonucleotide Insertion and Large-Scale Assessment of Single-Guide RNAs. PLoS ONE. 9(5). e98186–e98186. 634 indexed citations breakdown →

17.

Thyme, Summer B., David Baker, & Philip Bradley. (2012). Improved Modeling of Side-Chain–Base Interactions and Plasticity in Protein–DNA Interface Design. Journal of Molecular Biology. 419(3-4). 255–274. 16 indexed citations

18.

Szeto, Mindy D, et al.. (2011). Mining Endonuclease Cleavage Determinants in Genomic Sequence Data. Journal of Biological Chemistry. 286(37). 32617–32627. 14 indexed citations

19.

Windbichler, Nikolai, Philippos Aris Papathanos, Summer B. Thyme, et al.. (2011). A synthetic homing endonuclease-based gene drive system in the human malaria mosquito. Nature. 473(7346). 212–215. 228 indexed citations

20.

Thyme, Summer B., Jordan Jarjour, Ryo Takeuchi, et al.. (2009). Exploitation of binding energy for catalysis and design. Nature. 461(7268). 1300–1304. 81 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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