Stephen D. Shank

2.7k total citations · 2 hit papers
18 papers, 1.2k citations indexed

About

Stephen D. Shank is a scholar working on Molecular Biology, Genetics and Computational Theory and Mathematics. According to data from OpenAlex, Stephen D. Shank has authored 18 papers receiving a total of 1.2k indexed citations (citations by other indexed papers that have themselves been cited), including 10 papers in Molecular Biology, 8 papers in Genetics and 5 papers in Computational Theory and Mathematics. Recurrent topics in Stephen D. Shank's work include Genomics and Phylogenetic Studies (8 papers), Genetic diversity and population structure (5 papers) and Evolution and Genetic Dynamics (4 papers). Stephen D. Shank is often cited by papers focused on Genomics and Phylogenetic Studies (8 papers), Genetic diversity and population structure (5 papers) and Evolution and Genetic Dynamics (4 papers). Stephen D. Shank collaborates with scholars based in United States, Papua New Guinea and Australia. Stephen D. Shank's co-authors include Sergei L. Kosakovsky Pond, Steven Weaver, Spencer V. Muse, Stephanie J. Spielman, Michael Li, Sadie R Wisotsky, Brittany Rife Magalis, Anton Nekrutenko, Dave Bouvier and Ryan Velazquez and has published in prestigious journals such as Nature Communications, PLoS ONE and Molecular Biology and Evolution.

In The Last Decade

Stephen D. Shank

17 papers receiving 1.2k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Datamonkey 2.0: A Modern Web Application for Characterizing Selective and Other Evolutionary Processes

2017 619 citations Steven Weaver, Stephen D. Shank et al. Molecular Biology and Evolution profile →
HyPhy 2.5—A Customizable Platform for Evolutionary Hypothesis Testing Using Phylogenies

2019 367 citations Sergei L. Kosakovsky Pond, Art F. Y. Poon et al. Molecular Biology and Evolution profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Stephen D. Shank United States	8	396	280	249	209	174	18	1.2k
Joe Parker United Kingdom	13	339 0.9×	263 0.9×	296 1.2×	167 0.8×	169 1.0×	18	1.2k
Camila J. Mazzoni Germany	20	504 1.3×	331 1.2×	168 0.7×	157 0.8×	392 2.3×	57	1.4k
S. Moola South Africa	6	304 0.8×	215 0.8×	301 1.2×	160 0.8×	104 0.6×	7	1.1k
Blair W. Perry United States	17	371 0.9×	471 1.7×	540 2.2×	172 0.8×	165 0.9×	47	1.4k
Martin Lott United Kingdom	8	437 1.1×	302 1.1×	327 1.3×	791 3.8×	113 0.6×	14	1.8k
Brittany Rife Magalis United States	14	360 0.9×	154 0.6×	308 1.2×	101 0.5×	110 0.6×	34	912
Darren P. Martin South Africa	6	317 0.8×	242 0.9×	397 1.6×	768 3.7×	128 0.7×	10	1.6k
James D. Wasmuth Canada	23	695 1.8×	206 0.7×	100 0.4×	282 1.3×	458 2.6×	50	1.8k
Mathieu Fourment Australia	19	620 1.6×	453 1.6×	364 1.5×	290 1.4×	234 1.3×	36	1.9k
Bradley J. Main United States	17	447 1.1×	244 0.9×	414 1.7×	210 1.0×	116 0.7×	20	1.3k

Countries citing papers authored by Stephen D. Shank

Since Specialization

Citations

This map shows the geographic impact of Stephen D. Shank's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Stephen D. Shank with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Stephen D. Shank more than expected).

Fields of papers citing papers by Stephen D. Shank

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Stephen D. Shank. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Stephen D. Shank. The network helps show where Stephen D. Shank may publish in the future.

Co-authorship network of co-authors of Stephen D. Shank

This figure shows the co-authorship network connecting the top 25 collaborators of Stephen D. Shank. A scholar is included among the top collaborators of Stephen D. Shank based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Stephen D. Shank. Stephen D. Shank is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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18 of 18 papers shown

De‐Kayne, Rishi, Stephen D. Shank, Linelle Abueg, et al.. (2024). Ecological diversification of sea catfishes is accompanied by genome-wide signatures of positive selection. Nature Communications. 15(1). 10040–10040. 2 indexed citations

Pond, Sergei L. Kosakovsky, Jean K. Millet, Ximena A. Olarte‐Castillo, et al.. (2023). Natural selection differences detected in key protein domains between non-pathogenic and pathogenic feline coronavirus phenotypes. Virus Evolution. 9(1). vead019–vead019. 5 indexed citations

Guerler, Aysam, Dannon Baker, Marius van den Beek, et al.. (2023). Fast and accurate genome-wide predictions and structural modeling of protein–protein interactions using Galaxy. BMC Bioinformatics. 24(1). 263–263. 1 indexed citations

Lucaci, Alexander G., Stephen D. Shank, Dave Bouvier, et al.. (2022). RASCL: Rapid Assessment of Selection in CLades through molecular sequence analysis. PLoS ONE. 17(11). e0275623–e0275623. 3 indexed citations

Lucaci, Alexander G., Sadie R Wisotsky, Stephen D. Shank, Steven Weaver, & Sergei L. Kosakovsky Pond. (2021). Extra base hits: Widespread empirical support for instantaneous multiple-nucleotide changes. PLoS ONE. 16(3). e0248337–e0248337. 11 indexed citations

Shank, Stephen D., et al.. (2020). Characterizing lineage-specific evolution and the processes driving genomic diversification in chordates. BMC Evolutionary Biology. 20(1). 24–24. 1 indexed citations

Wisotsky, Sadie R, Sergei L. Kosakovsky Pond, Stephen D. Shank, & Spencer V. Muse. (2020). Synonymous Site-to-Site Substitution Rate Variation Dramatically Inflates False Positive Rates of Selection Analyses: Ignore at Your Own Peril. Molecular Biology and Evolution. 37(8). 2430–2439. 45 indexed citations

Strickland, Samantha L., Stephen D. Shank, Patrick Autissier, et al.. (2020). Phyloanatomic characterization of the distinct T cell and monocyte contributions to the peripheral blood HIV population within the host. Virus Evolution. 6(1). veaa005–veaa005. 3 indexed citations

Spielman, Stephanie J., Steven Weaver, Stephen D. Shank, et al.. (2019). Evolution of Viral Genomes: Interplay Between Selection, Recombination, and Other Forces. Methods in molecular biology. 427–468. 46 indexed citations

10.

Pond, Sergei L. Kosakovsky, Art F. Y. Poon, Ryan Velazquez, et al.. (2019). HyPhy 2.5—A Customizable Platform for Evolutionary Hypothesis Testing Using Phylogenies. Molecular Biology and Evolution. 37(1). 295–299. 367 indexed citations breakdown →

11.

Shank, Stephen D., Steven Weaver, & Sergei L. Kosakovsky Pond. (2018). phylotree.js - a JavaScript library for application development and interactive data visualization in phylogenetics. BMC Bioinformatics. 19(1). 276–276. 37 indexed citations

12.

Hermansen, Russell A., et al.. (2017). The Adaptive Evolution Database (TAED): A New Release of a Database of Phylogenetically Indexed Gene Families from Chordates. Journal of Molecular Evolution. 85(1-2). 46–56. 4 indexed citations

13.

Weaver, Steven, Stephen D. Shank, Stephanie J. Spielman, et al.. (2017). Datamonkey 2.0: A Modern Web Application for Characterizing Selective and Other Evolutionary Processes. Molecular Biology and Evolution. 35(3). 773–777. 619 indexed citations breakdown →

14.

Shank, Stephen D., et al.. (2015). A short note on rank-2 relaxation for waveform inversion. 4 indexed citations

15.

Shank, Stephen D., Valeria Simoncini, & Daniel B. Szyld. (2015). Efficient low-rank solution of generalized Lyapunov equations. Numerische Mathematik. 134(2). 327–342. 34 indexed citations

16.

Shank, Stephen D.. (2014). Low-rank solution methods for large-scale linear matrix equations. TUScholarShare (Temple University). 1 indexed citations

17.

Shank, Stephen D. & Valeria Simoncini. (2013). Krylov Subspace Methods for Large-Scale Constrained Sylvester Equations. SIAM Journal on Matrix Analysis and Applications. 34(4). 1448–1463. 10 indexed citations

18.

Frommer, Andreas, et al.. (2013). Overlapping Blocks by Growing a Partition with Applications to Preconditioning. SIAM Journal on Scientific Computing. 35(1). A453–A473. 2 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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