Shining Ma

727 citations

21 papers · 253 indexed · h-index 9

Impact in

Genetics
- Genetic and Clinical Aspects of Sex Determination and Chromosomal Abnormalities
Molecular Biology
- Bioinformatics and Genomic Networks
- Gene expression and cancer classification
- CRISPR and Genetic Engineering
- Single-cell and spatial transcriptomics
- Epigenetics and DNA Methylation

Papers in ⓘ

Molecular Biology 14
- Genomics and Chromatin Dynamics 4
- Bioinformatics and Genomic Networks 4
- Gene expression and cancer classification 4
- Genomics and Phylogenetic Studies 3
- RNA and protein synthesis mechanisms 2
- RNA modifications and cancer 2
- Single-cell and spatial transcriptomics 1
Genetics 4
- Genetic Associations and Epidemiology 2

Co-authors: Tao Jiang (4 shared papers)Wing Hung Wong (8 shared papers)Rui Jiang (5 shared papers)Reenal Pattni (2 shared papers)Joachim Hallmayer (3 shared papers)Ei-Wen Yang (1 shared paper)Xianglong Zhang (3 shared papers)Marcus Ho (2 shared papers)
Journals: Proceedings of the National Academy of Sciences (3 papers)BMC Genomics (2 papers)Biological Psychiatry (1 paper)Journal of Neurophysiology (1 paper)Human Molecular Genetics (1 paper)
Partner nations: United States China Sweden

In The Last Decade

Shining Ma

20 papers receiving 249 citations

Peers

Countries citing papers authored by Shining Ma

Since Specialization

Citations

This map shows the geographic impact of Shining Ma's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Shining Ma with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Shining Ma more than expected).

Fields of papers citing papers by Shining Ma

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Shining Ma. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Shining Ma. The network helps show where Shining Ma may publish in the future.

Co-authors

The 25 scholars most cited alongside Shining Ma, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Shining Ma Line = papers co-authored together Shining Ma links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

Showing the 20 most-cited of 21 papers — load more, or switch the sort, to bring in the rest.

#	Work
1	Integrated functional genomic analyses of Klinefelter and Turner syndromes reveal global network effects of altered X chromosome dosage Proceedings of the National Academy of Sciences ·Xianglong Zhang, David S. Hong, Shining Ma, Thomas Ward, Marcus Ho, Reenal Pattni, Zhana Duren, Atanas D. Stankov, Sharon Bade Shrestha, Joachim Hallmayer, Wing Hung Wong, Allan L. Reiss, Alexander E. Urban	2020	60
2	Immunogenicity of recombinantLactobacillus casei-expressing F4 (K88) fimbrial adhesin FaeG in conjunction with a heat-labile enterotoxin A (LTAK63) and heat-labile enterotoxin B (LTB) of enterotoxigenicEscherichia colias an oral adjuvant in mice Journal of Applied Microbiology ·Mei Yu, Ruomei Qi, Cheng Chen, Jiechao Yin, Shining Ma, Wen Shi, Yuhong Wu, Junwei Ge, Yanping Jiang, Lijie Tang, Yongping Xu, Yang Li	2016	37
3	Accurate inference of isoforms from multiple sample RNA-Seq data BMC Genomics ·Masruba Tasnim, Shining Ma, Ei-Wen Yang, Tao Jiang, Wei Li	2015	28
4	Construction and Analysis of Functional Networks in the Gut Microbiome of Type 2 Diabetes Patients Genomics Proteomics & Bioinformatics ·Lianshuo Li, Zicheng Wang, Peng He, Shining Ma, Jie Du, Rui Jiang	2016	17
5	Differential regulation enrichment analysis via the integration of transcriptional regulatory network and gene expression data Bioinformatics ·Shining Ma, Tao Jiang, Rui Jiang	2014	15
6	Network Effects of the 15q13.3 Microdeletion on the Transcriptome and Epigenome in Human-Induced Neurons Biological Psychiatry ·Siming Zhang, Xianglong Zhang, Carolin Purmann, Shining Ma, Anima Shrestha, Kasey Davis, Marcus Ho, Yi‐Ling Huang, Reenal Pattni, Wing Hung Wong, Jonathan A. Bernstein, Joachim Hallmayer, Alexander E. Urban	2020	14
7	Model-Based Approach to the Joint Analysis of Single-Cell Data on Chromatin Accessibility and Gene Expression Statistical Science ·Zhixiang Lin, Mahdi Zamanighomi, Timothy Daley, Shining Ma, Wing Hung Wong	2020	12
8	NeuronMotif: Deciphering cis-regulatory codes by layer-wise demixing of deep neural networks Proceedings of the National Academy of Sciences ·Wei Zheng, Kui Hua, Lei Wei, Shining Ma, Rui Jiang, Xuegong Zhang, Yanda Li, Wing Hung Wong, Xiaowo Wang	2023	11
9	Simultaneous inference of phenotype-associated genes and relevant tissues from GWAS data via Bayesian integration of multiple tissue-specific gene networks Journal of Molecular Cell Biology ·Mengmeng Wu, Zhixiang Lin, Shining Ma, Ting Chen, Rui Jiang, Wing Hung Wong	2017	9
10	Bifurcation analysis of nonlinear retinal horizontal cell models. II. Network properties Journal of Neurophysiology ·Raimond L. Winslow, Shining Ma	1990	8
11	Constructing tissue-specific transcriptional regulatory networks via a Markov random field BMC Genomics ·Shining Ma, Tao Jiang, Rui Jiang	2018	7
12	Leveraging cell-type-specific regulatory networks to interpret genetic variants in abdominal aortic aneurysm Proceedings of the National Academy of Sciences ·Shining Ma, Xi Chen, Xiang Zhu, Philip S. Tsao, Wing Hung Wong	2021	7
13	FreePSI: an alignment-free approach to estimating exon-inclusion ratios without a reference transcriptome Nucleic Acids Research ·Jianyu Zhou, Shining Ma, Dongfang Wang, Jianyang Zeng, Tao Jiang	2017	6
14	Mutations in human DNA methyltransferase DNMT1 induce specific genome-wide epigenomic and transcriptomic changes in neurodevelopment Human Molecular Genetics ·Kasey Davis, Pingping Qu, Shining Ma, Ling Lin, Melanie J. Plastini, Niklas Dahl, Giuseppe Plazzi, Fabio Pizza, Ruth O’Hara, Wing Hung Wong, Joachim Hallmayer, Emmanuel Mignot, Xianglong Zhang, Alexander E. Urban	2023	5
15	Attenuated IL-2 muteins leverage the TCR signal to enhance regulatory T cell homeostasis and response in vivo Frontiers in Immunology ·Shining Ma, Michelle So, Aazam P. Ghelani, Rohith Srivas, Anupama Sahoo, Robyn N. Hall, Wenjun Liu, Hao Wu, Sherman Yu, Shi-Ping Lu, Elly Song, Taryn A. Cariaga, Marcus Soto, Hong Zhou, Chi-Ming Li, Ashutosh Chaudhry, Xin Luo, Sue J. Sohn	2023	5
16	Transcriptome profiling of the crofton weed gall fly Procecidochares utilis Genetics and Molecular Research ·Xi Gao, Jiaying Zhu, Shining Ma, Z Zhang, Chen Xiao, Q. Li, Zhiwei Li, Guoxing Wu	2014	5
17	Genetic effects of sequence-conserved enhancer-like elements on human complex traits Genome biology ·Xiang Zhu, Shining Ma, Wing Hung Wong	2024	4
18	NLRP10 maintains epidermal homeostasis by promoting keratinocyte survival and P63-dependent differentiation and barrier function Cell Death and Disease ·Yeonhee Cho, Zhongzheng Cao, Xin Luo, Jennifer J. Tian, Renee R. Hukkanen, Rajaa Hussien, Belinda Cancilla, Priyanka Chowdhury, Fei Li, Shining Ma, Edward L. LaGory, Mark A. Schroeder, Amanda Dusenberry, Liza Marshall, John A. Hawkins, Menno van Lookeren Campagne, Yi Zhou	2024	1
19	An application of correlation dimension of bio-speckles to measuring skin thickness Wen Wuqu, Rulian Fu, En-Xu Ba, Liu Ying, Xiaojuan Zhang, Shining Ma	2003	1
20	Abstract 012: Performance of Polygenic Risk Scores for Coronary Artery Disease in the Million Veteran Program Circulation ·Catherine Tcheandjieu, Xiang Zhu, Shining Ma, Austin T. Hilliard, Shoa L. Clarke, Julie A. Lynch, Scott M. Damrauer, Amit V. Khera, Sekar Kathiresan, Philip S. Tsao, J. Michael Gaziano, Peter W.F. Wilson, Christopher J. O’Donnell, Themistocles L. Assimes, (unknown)	2019	1

About Shining Ma

Shining Ma is a scholar working on Molecular Biology, Genetics, Cognitive Neuroscience, Plant Science and Infectious Diseases, having authored 21 papers that have together received 253 indexed citations. Recurring topics across this work include Genomics and Chromatin Dynamics (4 papers), Bioinformatics and Genomic Networks (4 papers), Gene expression and cancer classification (4 papers), Genomics and Phylogenetic Studies (3 papers), Genetic Associations and Epidemiology (2 papers), RNA and protein synthesis mechanisms (2 papers), RNA modifications and cancer (2 papers) and Single-cell and spatial transcriptomics (1 paper). The work is most often cited by research in Genetics (89 citations), Molecular Biology (173 citations), Endocrinology (11 citations), Cancer Research (22 citations) and Biophysics (8 citations). Shining Ma has collaborated with scholars based in United States, China and Sweden. Frequent co-authors include Tao Jiang, Wing Hung Wong, Rui Jiang, Reenal Pattni, Joachim Hallmayer, Ei-Wen Yang, Xianglong Zhang, Marcus Ho, Alexander E. Urban and Wei Li. Their work appears in journals such as Proceedings of the National Academy of Sciences, BMC Genomics, Biological Psychiatry, Journal of Neurophysiology and Human Molecular Genetics.

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