Scot Federman

10.0k citations

34 papers · 2.5k indexed · 2 hit papers · h-index 21

Impact in

Infectious Diseases top 2%
- Viral gastroenteritis research and epidemiology
Clinical Biochemistry top 2%
- Bacterial Identification and Susceptibility Testing

Papers in ⓘ

Infectious Diseases 15
- Viral gastroenteritis research and epidemiology 7
- Viral Infections and Vectors 5
Molecular Biology 15
- Genomics and Phylogenetic Studies 4
- Melanoma and MAPK Pathways 2

Co-authors: Charles Y. Chiu (22 shared papers)Samia N. Naccache (10 shared papers)Doug Stryke (6 shared papers)Erik Samayoa (3 shared papers)Steve Miller (5 shared papers)Alexander L. Greninger (3 shared papers)Jérôme Bouquet (7 shared papers)Kevin Messacar (4 shared papers)
Journals: Clinical Infectious Diseases (3 papers)Proceedings of the National Academy of Sciences (3 papers)Modern Pathology (2 papers)Genome Medicine (2 papers)Nature Genetics (1 paper)
Partner nations: United States United Kingdom Democratic Republic of the Congo

In The Last Decade

Scot Federman

32 papers receiving 2.5k citations

Hit Papers

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Laboratory validation of a clinical metagenomic sequencing assay for pathogen detection in cerebrospinal fluid 2019 · 368 citations

Peers

Countries citing papers authored by Scot Federman

Since Specialization

Citations

This map shows the geographic impact of Scot Federman's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Scot Federman with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Scot Federman more than expected).

Fields of papers citing papers by Scot Federman

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Scot Federman. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Scot Federman. The network helps show where Scot Federman may publish in the future.

Co-authors

The 25 scholars most cited alongside Scot Federman, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Scot Federman Line = papers co-authored together Scot Federman links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

Showing the 20 most-cited of 34 papers — load more, or switch the sort, to bring in the rest.

#	Work
1	Laboratory validation of a clinical metagenomic sequencing assay for pathogen detection in cerebrospinal fluid Genome Research ·Steve Miller, Samia N. Naccache, Erik Samayoa, Kevin Messacar, Shaun Arevalo, Scot Federman, Doug Stryke, Elizabeth Pham, Becky Fung, William J. Bolosky, Danielle Ingebrigtsen, Walter Lorizio, Sandra M. Paff, John A. D. Leake, Rick L. Pesano, Roberta L. DeBiasi, Samuel R. Dominguez, Charles Y. Chiu Hit paper breakdown →	2019	368
2	Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis Genome Medicine ·Alexander L. Greninger, Samia N. Naccache, Scot Federman, Guixia Yu, Placide Mbala, Vanessa Brès, Doug Stryke, Jérôme Bouquet, Sneha Somasekar, Jeffrey M. Linnen, Roger Y. Dodd, Prime Mulembakani, Bradley S. Schneider, Jean‐Jacques Muyembé‐Tamfum, Susan L. Stramer, Charles Y. Chiu Hit paper breakdown →	2015	353
3	The gene expression signatures of melanoma progression Proceedings of the National Academy of Sciences ·Christopher M. Haqq, Mehdi Nosrati, Daniel Sudilovsky, Julia Crothers, Daniel Khodabakhsh, Brian Pulliam, Scot Federman, James R. Miller, Robert E. Allen, Mark I. Singer, Stanley P. L. Leong, Britt‐Marie Ljung, Richard W. Sagebiel, Mohammed Kashani–Sabet	2005	335
4	A novel outbreak enterovirus D68 strain associated with acute flaccid myelitis cases in the USA (2012–14): a retrospective cohort study The Lancet Infectious Diseases ·Alexander L. Greninger, Samia N. Naccache, Kevin Messacar, Anna Marie Clayton, Guixia Yu, Sneha Somasekar, Scot Federman, Doug Stryke, Christopher Anderson, Shigeo Yagi, Sharon Messenger, Debra A. Wadford, Dongxiang Xia, James Watt, Keith Van Haren, Samuel R. Dominguez, Carol Glaser, Grace M. Aldrovandi, Charles Y. Chiu	2015	280
5	Diagnosis of Neuroinvasive Astrovirus Infection in an Immunocompromised Adult With Encephalitis by Unbiased Next-Generation Sequencing Clinical Infectious Diseases ·Samia N. Naccache, Karl S. Peggs, Frank Mattes, Rahul Phadke, Jeremy A. Garson, Paul Grant, Erik Samayoa, Scot Federman, Steve Miller, Michael P. Lunn, Vanya Gant, Charles Y. Chiu	2015	218
6	An ensemble strategy that significantly improves de novo assembly of microbial genomes from metagenomic next-generation sequencing data Nucleic Acids Research ·Xutao Deng, Samia N. Naccache, Terry Fei Fan Ng, Scot Federman, Linlin Li, Charles Y. Chiu, Eric Delwart	2015	201
7	Genes and pathways downstream of telomerase in melanoma metastasis Proceedings of the National Academy of Sciences ·Sepideh Bagheri, Mehdi Nosrati, Shang Li, Sylvia Fong, Sima Torabian, Javier Rangel, Dan H. Moore, Scot Federman, Rebecca R. Laposa, Frederick L. Baehner, Richard W. Sagebiel, James E. Cleaver, Christopher M. Haqq, Robert J. Debs, Elizabeth H. Blackburn, Mohammed Kashani–Sabet	2006	104
8	The eukaryotic gut virome in hematopoietic stem cell transplantation: new clues in enteric graft-versus-host disease Nature Medicine ·Jérôme LeGoff, Matthieu Resche‐Rigon, Jérôme Bouquet, Marie Robin, Samia N. Naccache, Séverine Mercier‐Delarue, Scot Federman, Erik Samayoa, Clotilde Rousseau, Prescillia Piron, Nathalie Kapel, François Simon, Gèrard Socié, Charles Y. Chiu	2017	100
9	Clinical metagenomic identification of Balamuthia mandrillaris encephalitis and assembly of the draft genome: the continuing case for reference genome sequencing Genome Medicine ·Alexander L. Greninger, Kevin Messacar, Thelma H. Dunnebacke, Samia N. Naccache, Scot Federman, Jérôme Bouquet, David M. Mirsky, Yosuke Nomura, Shigeo Yagi, Carol Glaser, Michael Vollmer, Craig A. Press, Bette K. Kleinschmidt‐DeMasters, Samuel R. Dominguez, Charles Y. Chiu	2015	90
10	Longitudinal Transcriptome Analysis Reveals a Sustained Differential Gene Expression Signature in Patients Treated for Acute Lyme Disease mBio ·Jérôme Bouquet, Mark J. Soloski, Andrea Swei, Chris Cheadle, Scot Federman, Jean-Noel Billaud, Alison W. Rebman, Beniwende Kabre, Richard Halpert, Meher Preethi Boorgula, John N. Aucott, Charles Y. Chiu	2016	66
11	Diagnosis of Fatal Human Case of St. Louis Encephalitis Virus Infection by Metagenomic Sequencing, California, 2016 Emerging infectious diseases ·Charles Y. Chiu, Lark L. Coffey, Jamie A. Murkey, Kelly Symmes, Hannah A. Sample, Michael R. Wilson, Samia N. Naccache, Shaun Arevalo, Sneha Somasekar, Scot Federman, Doug Stryke, Paul Vespa, Gary J. Schiller, Sharon Messenger, Romney M. Humphries, Steve Miller, Jeffrey D. Klausner	2017	60
12	Identification of high-risk human papillomavirus and Rb/E2F pathway genomic alterations in mutually exclusive subsets of colorectal neuroendocrine carcinoma Modern Pathology ·Eliah R. Shamir, W. Patrick Devine, Melike Pekmezci, Sarah E. Umetsu, Gregor Krings, Scot Federman, Soo‐Jin Cho, Tara A. Saunders, Kuang‐Yu Jen, Emily K. Bergsland, Kirk D. Jones, Grace Kim, Sanjay Kakar, Charles Y. Chiu, Nancy M. Joseph	2018	48
13	Nutritional supplements, COX-2 and IGF-1 expression in men on active surveillance for prostate cancer Cancer Causes & Control ·June M. Chan, Vivian Weinberg, Mark Jesus M. Magbanua, Eduardo V. Sosa, Jeffry Simko, Katsuto Shinohara, Scot Federman, Mike Mattie, Millie Hughes‐Fulford, Christopher M. Haqq, Peter R. Carroll	2010	42
14	Utility of Metagenomic Next-Generation Sequencing for Characterization of HIV and Human Pegivirus Diversity PLoS ONE ·Ka‐Cheung Luk, Michael G. Berg, Samia N. Naccache, Beniwende Kabre, Scot Federman, Dora Mbanya, Lazare Kaptué, Charles Y. Chiu, Catherine A. Brennan, John Hackett	2015	33
15	Pleckstrin homology domain-interacting protein (PHIP) as a marker and mediator of melanoma metastasis Proceedings of the National Academy of Sciences ·David de Semir, Mehdi Nosrati, Vladimir Bezrookove, Altaf A. Dar, Scot Federman, G. Bienvenu, Suraj Venna, Javier Rangel, Joan Climent, Tanja Tamgüney, Suresh Thummala, Schuyler Tong, Stanley P. L. Leong, Chris Haqq, Paul R. Billings, James R. Miller, Richard W. Sagebiel, Robert J. Debs, Mohammed Kashani–Sabet	2012	30
16	Longitudinal comparison of the developing gut virome in infants and their mothers Cell Host & Microbe ·William A. Walters, Andrea Granados, Catherine Ley, Scot Federman, Doug Stryke, Yale Santos, Thomas D. Haggerty, Alicia Sotomayor-González, Venice Servellita, Ruth E. Ley, Julie Parsonnet, Charles Y. Chiu	2023	29
17	Metabolic, pathologic, and genetic analysis of prostate tissues: quantitative evaluation of histopathologic and mRNA integrity after HR‐MAS spectroscopy NMR in Biomedicine ·Carissa F. Santos, John Kurhanewicz, Z. Laura Tabatabai, Jeffry Simko, Kayvan R. Keshari, Akpene Gbegnon, Romelyn Delos Santos, Scot Federman, Katsuto Shinohara, Peter R. Carroll, Christopher M. Haqq, Mark G. Swanson	2009	27
18	Functional Modulation of IGF-Binding Protein-3 Expression in Melanoma Journal of Investigative Dermatology ·Altaf A. Dar, Shahana Majid, Mehdi Nosrati, David de Semir, Scot Federman, Mohammed Kashani–Sabet	2010	26
19	Polyoma virus-associated carcinomas of the urologic tract: a clinicopathologic and molecular study Modern Pathology ·Deepika Sirohi, Charles Vaske, Zack Sanborn, Steven C. Smith, Michelle Don, Kathryn Lindsey, Scot Federman, Mahesha Vankalakunti, Jamie Koo, Shikha Bose, Mariza de Peralta‐Venturina, Jessica Van Ziffle, James P. Grenert, Steve Miller, Charles Y. Chiu, Mahul B. Amin, Jeffry Simko, Bradley A. Stohr, Daniel Luthringer	2018	24
20	A comparison of RNA amplification techniques at sub-nanogram input concentration BMC Genomics ·Julie E. Lang, Mark Jesus M. Magbanua, Janet H. Scott, G. Mike Makrigiorgos, Gang Wang, Scot Federman, Laura J. Esserman, John W. Park, Christopher M. Haqq	2009	23

About Scot Federman

Scot Federman is a scholar working on Infectious Diseases, Molecular Biology, Ecology, Oncology and Epidemiology, having authored 34 papers that have together received 2.5k indexed citations. Recurring topics across this work include Viral gastroenteritis research and epidemiology (7 papers), Bacteriophages and microbial interactions (6 papers), Viral Infections and Vectors (5 papers), Genomics and Phylogenetic Studies (4 papers), Respiratory viral infections research (3 papers), Mosquito-borne diseases and control (3 papers), Animal Virus Infections Studies (2 papers) and Melanoma and MAPK Pathways (2 papers). The work is most often cited by research in Infectious Diseases (745 citations), Clinical Biochemistry (194 citations), Microbiology (156 citations), Epidemiology (753 citations) and Animal Science and Zoology (195 citations). Scot Federman has collaborated with scholars based in United States, United Kingdom and Democratic Republic of the Congo. Frequent co-authors include Charles Y. Chiu, Samia N. Naccache, Doug Stryke, Erik Samayoa, Steve Miller, Alexander L. Greninger, Jérôme Bouquet, Kevin Messacar, Samuel R. Dominguez and Sneha Somasekar. Their work appears in journals such as Clinical Infectious Diseases, Proceedings of the National Academy of Sciences, Modern Pathology, Genome Medicine and Nature Genetics.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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