Scot Federman

10.0k total citations · 2 hit papers
34 papers, 2.5k citations indexed

About

Scot Federman is a scholar working on Infectious Diseases, Molecular Biology and Ecology. According to data from OpenAlex, Scot Federman has authored 34 papers receiving a total of 2.5k indexed citations (citations by other indexed papers that have themselves been cited), including 15 papers in Infectious Diseases, 15 papers in Molecular Biology and 7 papers in Ecology. Recurrent topics in Scot Federman's work include Viral gastroenteritis research and epidemiology (7 papers), Bacteriophages and microbial interactions (6 papers) and Viral Infections and Vectors (5 papers). Scot Federman is often cited by papers focused on Viral gastroenteritis research and epidemiology (7 papers), Bacteriophages and microbial interactions (6 papers) and Viral Infections and Vectors (5 papers). Scot Federman collaborates with scholars based in United States, United Kingdom and Democratic Republic of the Congo. Scot Federman's co-authors include Charles Y. Chiu, Samia N. Naccache, Doug Stryke, Erik Samayoa, Steve Miller, Alexander L. Greninger, Jérôme Bouquet, Kevin Messacar, Sneha Somasekar and Samuel R. Dominguez and has published in prestigious journals such as Proceedings of the National Academy of Sciences, Nucleic Acids Research and Nature Medicine.

In The Last Decade

Scot Federman

32 papers receiving 2.5k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Laboratory validation of a clinical metagenomic sequencing assay for pathogen detection in cerebrospinal fluid

2019 368 citations Steve Miller, Samia N. Naccache et al. Genome Research profile →
Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis

2015 353 citations Alexander L. Greninger, Samia N. Naccache et al. Genome Medicine profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Scot Federman United States	21	1.0k	753	745	384	323	34	2.5k
Samia N. Naccache United States	26	890 0.9×	1.0k 1.4×	1.2k 1.7×	154 0.4×	410 1.3×	43	3.1k
Guixia Yu United States	17	2.8k 2.8×	586 0.8×	1.6k 2.1×	155 0.4×	260 0.8×	27	4.8k
Andrew Lever United Kingdom	37	2.3k 2.3×	1.3k 1.8×	1.1k 1.5×	143 0.4×	230 0.7×	195	5.2k
Roland Sahli Switzerland	30	1.0k 1.0×	1.1k 1.5×	770 1.0×	1.2k 3.1×	405 1.3×	68	3.9k
D Olive France	26	778 0.8×	570 0.8×	536 0.7×	649 1.7×	283 0.9×	90	3.1k
Hiroshi Yoshikura Japan	31	1.3k 1.3×	1.9k 2.5×	674 0.9×	187 0.5×	117 0.4×	223	4.5k
Nicole Fischer Germany	36	938 0.9×	713 0.9×	782 1.0×	682 1.8×	155 0.5×	118	3.6k
Michael Huber Switzerland	27	673 0.7×	517 0.7×	829 1.1×	112 0.3×	126 0.4×	76	2.5k
Panayotis Markoulatos Greece	24	566 0.6×	791 1.1×	951 1.3×	108 0.3×	136 0.4×	108	2.2k
Morgyn S. Warner Australia	16	339 0.3×	1.5k 2.0×	219 0.3×	208 0.5×	138 0.4×	48	2.3k

Countries citing papers authored by Scot Federman

Since Specialization

Citations

This map shows the geographic impact of Scot Federman's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Scot Federman with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Scot Federman more than expected).

Fields of papers citing papers by Scot Federman

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Scot Federman. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Scot Federman. The network helps show where Scot Federman may publish in the future.

Co-authorship network of co-authors of Scot Federman

This figure shows the co-authorship network connecting the top 25 collaborators of Scot Federman. A scholar is included among the top collaborators of Scot Federman based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Scot Federman. Scot Federman is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

Yang, Yeqing Angela, K. Mäder, Volkan Sevi̇m, et al.. (2025). Simultaneous capture of single cell RNA-seq, ATAC-seq, and CRISPR perturbation enables multiomic screens to identify gene regulatory relationships. Cell Reports Methods. 5(12). 101222–101222.

Viazis, Stelios, Michael C. Bazaco, Tyann Blessington, et al.. (2025). An Overview of Farm Investigation Findings Associated with Outbreaks of Shiga Toxin-Producing Escherichia coli Infections Linked to Leafy Greens: 2009–2021. Journal of Food Protection. 88(7). 100542–100542. 1 indexed citations

Heo, Seok‐Jin, Scot Federman, Phuong T. Nguyen, et al.. (2024). Compact CRISPR genetic screens enabled by improved guide RNA library cloning. Genome biology. 25(1). 25–25. 6 indexed citations

Loeb, Gabriel B., Pooja Kathail, Richard W. Shuai, et al.. (2024). Variants in tubule epithelial regulatory elements mediate most heritable differences in human kidney function. Nature Genetics. 56(10). 2078–2092. 3 indexed citations

Vasudevan, Harish N., Ann Lazar, Kevin Reyes, et al.. (2024). Comparison of Plasma Metagenomic Next-generation Sequencing and PCR Methods for Epstein–Barr Virus Viral Load Monitoring in Nasopharyngeal Carcinoma. Anticancer Research. 44(12). 5445–5453.

Walters, William A., Andrea Granados, Catherine Ley, et al.. (2023). Longitudinal comparison of the developing gut virome in infants and their mothers. Cell Host & Microbe. 31(2). 187–198.e3. 29 indexed citations

Orf, Gregory S., Alessandro Olivo, Barbara J. Harris, et al.. (2023). Metagenomic Detection of Divergent Insect- and Bat-Associated Viruses in Plasma from Two African Individuals Enrolled in Blood-Borne Surveillance. Viruses. 15(4). 1022–1022. 10 indexed citations

Villarino, Elsa, Xianding Deng, Carol A. Kemper, et al.. (2021). Introduction, Transmission Dynamics, and Fate of Early Severe Acute Respiratory Syndrome Coronavirus 2 Lineages in Santa Clara County, California. The Journal of Infectious Diseases. 224(2). 207–217. 1 indexed citations

Tan, Susanna K., Andrea Granados, Jérôme Bouquet, et al.. (2020). Metagenomic sequencing of stool samples in Bangladeshi infants: virome association with poliovirus shedding after oral poliovirus vaccination. Scientific Reports. 10(1). 15392–15392. 7 indexed citations

10.

Miller, Steve, Samia N. Naccache, Erik Samayoa, et al.. (2019). Laboratory validation of a clinical metagenomic sequencing assay for pathogen detection in cerebrospinal fluid. Genome Research. 29(5). 831–842. 368 indexed citations breakdown →

11.

Sirohi, Deepika, Charles Vaske, Zack Sanborn, et al.. (2018). Polyoma virus-associated carcinomas of the urologic tract: a clinicopathologic and molecular study. Modern Pathology. 31(9). 1429–1441. 24 indexed citations

12.

Bouquet, Jérôme, Mark J. Soloski, Andrea Swei, et al.. (2016). Longitudinal Transcriptome Analysis Reveals a Sustained Differential Gene Expression Signature in Patients Treated for Acute Lyme Disease. mBio. 7(1). e00100–16. 66 indexed citations

13.

Greninger, Alexander L., Samia N. Naccache, Kevin Messacar, et al.. (2015). A novel outbreak enterovirus D68 strain associated with acute flaccid myelitis cases in the USA (2012–14): a retrospective cohort study. The Lancet Infectious Diseases. 15(6). 671–682. 280 indexed citations

14.

Greninger, Alexander L., Kevin Messacar, Thelma H. Dunnebacke, et al.. (2015). Clinical metagenomic identification of Balamuthia mandrillaris encephalitis and assembly of the draft genome: the continuing case for reference genome sequencing. Genome Medicine. 7(1). 113–113. 90 indexed citations

15.

Semir, David de, Mehdi Nosrati, Vladimir Bezrookove, et al.. (2012). Pleckstrin homology domain-interacting protein (PHIP) as a marker and mediator of melanoma metastasis. Proceedings of the National Academy of Sciences. 109(18). 7067–7072. 30 indexed citations

16.

Dar, Altaf A., Shahana Majid, Mehdi Nosrati, et al.. (2010). Functional Modulation of IGF-Binding Protein-3 Expression in Melanoma. Journal of Investigative Dermatology. 130(8). 2071–2079. 26 indexed citations

17.

Chan, June M., Vivian Weinberg, Mark Jesus M. Magbanua, et al.. (2010). Nutritional supplements, COX-2 and IGF-1 expression in men on active surveillance for prostate cancer. Cancer Causes & Control. 22(1). 141–150. 42 indexed citations

18.

Kurhanewicz, John, Z. Laura Tabatabai, Jeffry Simko, et al.. (2009). Metabolic, pathologic, and genetic analysis of prostate tissues: quantitative evaluation of histopathologic and mRNA integrity after HR‐MAS spectroscopy. NMR in Biomedicine. 23(4). 391–398. 27 indexed citations

19.

Lang, Julie E., Mark Jesus M. Magbanua, Janet H. Scott, et al.. (2009). A comparison of RNA amplification techniques at sub-nanogram input concentration. BMC Genomics. 10(1). 326–326. 23 indexed citations

20.

Torabian, Sima, David de Semir, Mehdi Nosrati, et al.. (2009). Ribozyme-Mediated Targeting of IκBγ Inhibits Melanoma Invasion and Metastasis. American Journal Of Pathology. 174(3). 1009–1016. 8 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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