Patrick M. Shih

5.2k citations

82 papers · 2.5k indexed · h-index 26

Paleontology top 5%
Environmental Chemistry top 5%
Ecology top 5%
- Microbial Community Ecology and Physiology 16
Molecular Biology top 5%
- Photosynthetic Processes and Mechanisms 14
- Genomics and Phylogenetic Studies 13
- Plant tissue culture and regeneration 13
- Microbial Metabolic Engineering and Bioproduction 13
- CRISPR and Genetic Engineering 10
Plant Science top 5%
Biomedical Engineering
- Biofuel production and bioconversion 13
Biotechnology
- Transgenic Plants and Applications 8

Co-authors: Lewis M. Ward Woodward W. Fischer Nicholas J. Matzke Cheryl A. Kerfeld James Hemp Dominique Loqué Steven P. Briggs Stéphane Bellafiore
Cited by: Paleontology Environmental Chemistry Ecology
Journals: Nature Communications (5 papers)Applied and Environmental Microbiology (5 papers)Proceedings of the National Academy of Sciences (5 papers)
Partner nations: United States Denmark China

In The Last Decade

Patrick M. Shih

76 papers receiving 2.5k citations

Peers

Countries citing papers authored by Patrick M. Shih

Since Specialization

Citations

This map shows the geographic impact of Patrick M. Shih's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Patrick M. Shih with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Patrick M. Shih more than expected).

Fields of papers citing papers by Patrick M. Shih

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Patrick M. Shih. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Patrick M. Shih. The network helps show where Patrick M. Shih may publish in the future.

Co-authorship network

The 25 scholars most cited alongside Patrick M. Shih, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Patrick M. Shih Line = papers co-authored together Patrick M. Shih links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

#	Work
1	Multiplexed profiling of transcriptional regulators in plant cells Nature Biotechnology ·Simón Álamos,Lucas Waldburger,Han Chu,茂柏村,Rameshwar Singh Rattan,D. MARTIN,Patrick M. Shih	2025	0
2	Quantitative dissection of Agrobacterium T-DNA expression in single plant cells reveals density-dependent synergy and antagonism Nature Plants ·Simón Álamos,Biserka Ignjatovic,Mitchell G. Thompson,Danielle M. Stevens,Liam D. Kirkpatrick,Han Chu,H. Pannu,Aori Li,Wef,Sierra Pazmiño,Ksenia V. Krasileva,Edward E. K. Baidoo,Patrick M. Shih	2025	3
3	Cynipid wasps systematically reprogram host metabolism and restructure cell walls in developing galls PLANT PHYSIOLOGY ·Kasey Markel,Reinhard Drews,Benjamin P. Bowen,加藤武晴,M SSpach,Sasilada Sirirungruang,Anna Rainer,Katherine Louie,Trent R. Northen,Aymerick Eudes,Henrik Vibe Scheller,Patrick M. Shih	2024	3
4	Structural and biochemical basis for regiospecificity of the flavonoid glycosyltransferase UGT95A1 Journal of Biological Chemistry ·Sasilada Sirirungruang,Vincent Blay,Syed Danish Sharief,J.H. Pereira,Michal Hammel,村井厚士,Paul D. Adams,Patrick M. Shih	2024	4
5	Cyanobacteria from marine oxygen-deficient zones encode both form I and form II Rubiscos Proceedings of the National Academy of Sciences ·Alexander L. Jaffe,貢滝田,O Editor,Mahdiyeh Nouri Goushki,Josep M. García Janoher,Noam Prywes,Patrick M. Shih,Jodi N. Young,Gabrielle Rocap,Anne Dekas	2024	3
6	Mapping the kinetic landscape of rubisco Biophysical Journal ·Noam Prywes,Gaetano Mancini,Luke M. Oltrogge,Benoit de Pins,Mahdiyeh Nouri Goushki,T Sakamoto,Shuzo UedaKazuo Ogawa,L Hall,Abhishek Bhatt,Patrick M. Shih,Ron Milo,David F. Savage	2024	1
7	Binary vector copy number engineering improves Agrobacterium-mediated transformation Nature Biotechnology ·Biserka Ignjatovic,Lucas Waldburger,Shahjahan Fazlani,Gina M. Geiselman,Liam D. Kirkpatrick,Bettina Elxnat,E. Rueben,Rita Kuo,Alexandra Asbach-Nitzsche,H. Pannu,Aori Li,Wef,Nathan J. Hillson,Jacob O. Brunkard,Jay D. Keasling,John M. Gladden,Mitchell G. Thompson,Patrick M. Shih	2024	16
8	Transcriptome architecture of the three main lineages of agrobacteria mSystems ·Lucas Waldburger,P. Muller,Alexandra J. Weisberg,Namil Lee,Jeff H. Chang,Jay D. Keasling,Patrick M. Shih	2023	1
9	Genome-edited foods Nature Reviews Bioengineering ·Aytug Tuncel,Changtian Pan,Thorben Sprink,Ralf Wilhelm,Rodolphe Barrangou,Li Li,Patrick M. Shih,Rajeev K. Varshney,Leena Tripathi,Joyce Van Eck,Kranthi K. Mandadi,Yiping Qi	2023	31
10	A dolabralexin-deficient mutant provides insight into specialized diterpenoid metabolism in maize PLANT PHYSIOLOGY ·Katherine M. Murphy,悦夫千原,유웅렬,Si Nian Char,Bing Yang,正一原田,Patrick M. Shih,Christopher N. Topp,Eric A. Schmelz,Philipp Zerbe	2023	5
11	Nitrogen Metabolism in Pseudomonas putida: Functional Analysis Using Random Barcode Transposon Sequencing Applied and Environmental Microbiology ·Matthias Schmidt,Allison N. Pearson,Matthew R. Incha,P. Muller,Edward E. K. Baidoo,Ramu Kakumanu,Aindrila Mukhopadhyay,Patrick M. Shih,Adam M. Deutschbauer,Lars M. Blank,Jay D. Keasling	2022	19
12	Structural plasticity enables evolution and innovation of RuBisCO assemblies Science Advances ·志保市村,J.H. Pereira,Bettina Elxnat,Daniel J. Rosenberg,Douglas J. Orr,Rosa Maria O. Sousa,穆占劳,Michal Hammel,Paul D. Adams,Justin B. Siegel,Patrick M. Shih	2022	16
13	CRISPR–Act3.0 for highly efficient multiplexed gene activation in plants Nature Plants ·Changtian Pan,Erima. Henare,Kasey Markel,Aimee A. Malzahn,平三郎手束,Simon Sretenovic,Yingxiao Zhang,Yanhao Cheng,Patrick M. Shih,Yiping Qi	2021	141
14	Discovery of photosynthesis genes through whole-genome sequencing of acetate-requiring mutants of Chlamydomonas reinhardtii PLoS Genetics ·Setsuko Wakao,Patrick M. Shih,M.R. Clark,Wendy Schackwitz,幸治白山,Dhruv Patel‐Tupper,青木淳賢,Rachel M. Dent,Mansi Chovatia,Aditi Sharma,Joel Martin,Chia‐Lin Wei,Krishna Niyogi	2021	14
15	Fatty Acid and Alcohol Metabolism in Pseudomonas putida: Functional Analysis Using Random Barcode Transposon Sequencing Applied and Environmental Microbiology ·P. Muller,Matthew R. Incha,Allison N. Pearson,Matthias Schmidt,勝志宮下,Christopher B. Eiben,Pablo Cruz‐Morales,Jacquelyn M. Blake-Hedges,Yuzhong Liu,Catharine A. Adams,Robert W. Haushalter,Oluwaseye Gbeminiyi Dosumu,J. Shi,Lars M. Blank,Aindrila Mukhopadhyay,Adam M. Deutschbauer,Patrick M. Shih,Jay D. Keasling	2020	66
16	Engineering Plant Synthetic Pathways for the Biosynthesis of Novel Antifungals ACS Central Science ·Thomas Henry Rigby,Khanh M. Vuu,Jay D. Keasling,Dominique Loqué,Elizabeth S. Sattely,Patrick M. Shih	2020	26
17	Novel bacterial clade reveals origin of form I Rubisco Nature Plants ·穆占劳,J.H. Pereira,志保市村,Douglas J. Orr,Michal Hammel,Christine He,M. A. J. Parry,Elizabete Carmo‐Silva,Paul D. Adams,Jillian F. Banfield,Patrick M. Shih	2020	50
18	Accumulation of high-value bioproducts in planta can improve the economics of advanced biofuels Proceedings of the National Academy of Sciences ·Minliang Yang,Nawa Raj Baral,Blake A. Simmons,Jenny C. Mortimer,Patrick M. Shih,Corinne D. Scown	2020	55
19	Robust Characterization of Two Distinct Glutarate Sensing Transcription Factors of Pseudomonas putida l -Lysine Metabolism ACS Synthetic Biology ·Mitchell G. Thompson,Zak Costello,Michiharu Handa,Pablo Cruz‐Morales,Jacquelyn M. Blake-Hedges,Oluwaseye Gbeminiyi Dosumu,L. Blair,Allison N. Pearson,Matthew R. Incha,Patrick M. Shih,Héctor García Martín,Jay D. Keasling	2019	22
20	Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria Nature Communications ·Paula B. Matheus Carnevali,Frederik Schulz,Cindy J. Castelle,Rose S. Kantor,Patrick M. Shih,Itai Sharon,Joanne M. Santini,Matthew R. Olm,Yuki Amano,Brian C. Thomas,Karthik Anantharaman,David Burstein,Eric D. Becraft,Ramūnas Stepanauskas,Tanja Woyke,Jillian F. Banfield	2019	52

About Patrick M. Shih

Patrick M. Shih is a scholar working on Biotechnology, Molecular Biology and Ecology, having authored 82 papers that have together received 2.5k indexed citations. Recurring topics across this work include Microbial Community Ecology and Physiology (16 papers), Photosynthetic Processes and Mechanisms (14 papers), Genomics and Phylogenetic Studies (13 papers), Plant tissue culture and regeneration (13 papers), Microbial Metabolic Engineering and Bioproduction (13 papers), Biofuel production and bioconversion (13 papers), CRISPR and Genetic Engineering (10 papers) and Transgenic Plants and Applications (8 papers). The work is most often cited by research in Paleontology (227 citations), Environmental Chemistry (221 citations) and Ecology (563 citations). Patrick M. Shih has collaborated with scholars based in United States, Denmark and China. Frequent co-authors include Lewis M. Ward, Woodward W. Fischer, Nicholas J. Matzke, Cheryl A. Kerfeld, James Hemp, Dominique Loqué, Steven P. Briggs, Stéphane Bellafiore, Zhouxin Shen and Kasey Markel. Their work appears in journals such as Nature Communications, Applied and Environmental Microbiology, Proceedings of the National Academy of Sciences, ACS Synthetic Biology and Current Biology.

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