Patrick M. Shih

5.2k total citations
82 papers, 2.5k citations indexed

About

Patrick M. Shih is a scholar working on Molecular Biology, Plant Science and Ecology. According to data from OpenAlex, Patrick M. Shih has authored 82 papers receiving a total of 2.5k indexed citations (citations by other indexed papers that have themselves been cited), including 68 papers in Molecular Biology, 22 papers in Plant Science and 19 papers in Ecology. Recurrent topics in Patrick M. Shih's work include Microbial Community Ecology and Physiology (16 papers), Photosynthetic Processes and Mechanisms (14 papers) and Genomics and Phylogenetic Studies (13 papers). Patrick M. Shih is often cited by papers focused on Microbial Community Ecology and Physiology (16 papers), Photosynthetic Processes and Mechanisms (14 papers) and Genomics and Phylogenetic Studies (13 papers). Patrick M. Shih collaborates with scholars based in United States, Denmark and China. Patrick M. Shih's co-authors include Lewis M. Ward, Woodward W. Fischer, Nicholas J. Matzke, Cheryl A. Kerfeld, James Hemp, Dominique Loqué, Steven P. Briggs, Zhouxin Shen, Pierre Abad and Kasey Markel and has published in prestigious journals such as Proceedings of the National Academy of Sciences, Journal of Biological Chemistry and Nature Communications.

In The Last Decade

Patrick M. Shih

76 papers receiving 2.5k citations

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Patrick M. Shih United States	26	1.5k	677	563	253	251	82	2.5k
Masanobu Kawachi Japan	29	1.1k 0.8×	358 0.5×	1.4k 2.5×	683 2.7×	361 1.4×	146	3.1k
Claudia Ciniglia Italy	20	775 0.5×	265 0.4×	519 0.9×	571 2.3×	168 0.7×	47	2.0k
Sheila Podell United States	32	1.6k 1.1×	295 0.4×	1.1k 1.9×	167 0.7×	129 0.5×	50	2.9k
Daniela Billi Italy	28	550 0.4×	162 0.2×	872 1.5×	355 1.4×	815 3.2×	67	2.1k
Michael J. Wynne United States	24	587 0.4×	258 0.4×	1.2k 2.2×	463 1.8×	504 2.0×	189	3.8k
Isao Inouye Japan	31	1.7k 1.1×	156 0.2×	1.3k 2.3×	639 2.5×	213 0.8×	105	2.9k
Linda E. Graham United States	32	1.2k 0.8×	1.6k 2.3×	849 1.5×	392 1.5×	1.2k 5.0×	105	3.7k
Alexis Dufresne France	21	1.9k 1.3×	1.4k 2.0×	2.0k 3.6×	352 1.4×	290 1.2×	31	4.2k
Haiwei Luo Hong Kong	32	1.8k 1.2×	325 0.5×	2.3k 4.1×	117 0.5×	68 0.3×	76	3.3k
Jackie L. Collier United States	25	1.5k 1.0×	326 0.5×	1.1k 2.0×	926 3.7×	382 1.5×	56	2.8k

Countries citing papers authored by Patrick M. Shih

Since Specialization

Citations

This map shows the geographic impact of Patrick M. Shih's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Patrick M. Shih with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Patrick M. Shih more than expected).

Fields of papers citing papers by Patrick M. Shih

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Patrick M. Shih. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Patrick M. Shih. The network helps show where Patrick M. Shih may publish in the future.

Co-authorship network of co-authors of Patrick M. Shih

This figure shows the co-authorship network connecting the top 25 collaborators of Patrick M. Shih. A scholar is included among the top collaborators of Patrick M. Shih based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Patrick M. Shih. Patrick M. Shih is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Álamos, Simón, Mitchell G. Thompson, Danielle M. Stevens, et al.. (2025). Quantitative dissection of Agrobacterium T-DNA expression in single plant cells reveals density-dependent synergy and antagonism. Nature Plants. 11(5). 1060–1073. 3 indexed citations

Sirirungruang, Sasilada, Vincent Blay, Khanh M. Vuu, et al.. (2025). A substrate-multiplexed platform for profiling enzymatic potential of plant family 1 glycosyltransferases. Nature Communications. 16(1). 6366–6366. 4 indexed citations

Álamos, Simón, et al.. (2025). Multiplexed profiling of transcriptional regulators in plant cells. Nature Biotechnology.

Markel, Kasey, Benjamin P. Bowen, Sasilada Sirirungruang, et al.. (2024). Cynipid wasps systematically reprogram host metabolism and restructure cell walls in developing galls. PLANT PHYSIOLOGY. 195(1). 698–712. 3 indexed citations

Prywes, Noam, Luke M. Oltrogge, Benoit de Pins, et al.. (2024). Mapping the kinetic landscape of rubisco. Biophysical Journal. 123(3). 19a–19a. 1 indexed citations

Sirirungruang, Sasilada, Vincent Blay, J.H. Pereira, et al.. (2024). Structural and biochemical basis for regiospecificity of the flavonoid glycosyltransferase UGT95A1. Journal of Biological Chemistry. 300(9). 107602–107602. 4 indexed citations

Waldburger, Lucas, Gina M. Geiselman, Liam D. Kirkpatrick, et al.. (2024). Binary vector copy number engineering improves Agrobacterium-mediated transformation. Nature Biotechnology. 43(10). 1708–1716. 16 indexed citations

Waldburger, Lucas, Alexandra J. Weisberg, Namil Lee, et al.. (2023). Transcriptome architecture of the three main lineages of agrobacteria. mSystems. 8(4). e0033323–e0033323. 1 indexed citations

Tuncel, Aytug, Changtian Pan, Thorben Sprink, et al.. (2023). Genome-edited foods. Nature Reviews Bioengineering. 1(11). 799–816. 31 indexed citations

10.

Murphy, Katherine M., Si Nian Char, Bing Yang, et al.. (2023). A dolabralexin-deficient mutant provides insight into specialized diterpenoid metabolism in maize. PLANT PHYSIOLOGY. 192(2). 1338–1358. 5 indexed citations

11.

Schmidt, Matthias, Allison N. Pearson, Matthew R. Incha, et al.. (2022). Nitrogen Metabolism in Pseudomonas putida: Functional Analysis Using Random Barcode Transposon Sequencing. Applied and Environmental Microbiology. 88(7). e0243021–e0243021. 19 indexed citations

12.

Pereira, J.H., Daniel J. Rosenberg, Douglas J. Orr, et al.. (2022). Structural plasticity enables evolution and innovation of RuBisCO assemblies. Science Advances. 8(34). eadc9440–eadc9440. 16 indexed citations

13.

Incha, Matthew R., Allison N. Pearson, Matthias Schmidt, et al.. (2021). Fatty Acid and Alcohol Metabolism in Pseudomonas putida: Functional Analysis Using Random Barcode Transposon Sequencing (vol 86, e01665-20, 2020). Applied and Environmental Microbiology. 87(8).

14.

Wakao, Setsuko, Patrick M. Shih, Wendy Schackwitz, et al.. (2021). Discovery of photosynthesis genes through whole-genome sequencing of acetate-requiring mutants of Chlamydomonas reinhardtii. PLoS Genetics. 17(9). e1009725–e1009725. 14 indexed citations

15.

Pan, Changtian, Kasey Markel, Aimee A. Malzahn, et al.. (2021). CRISPR–Act3.0 for highly efficient multiplexed gene activation in plants. Nature Plants. 7(7). 942–953. 141 indexed citations

16.

Incha, Matthew R., Allison N. Pearson, Matthias Schmidt, et al.. (2020). Fatty Acid and Alcohol Metabolism in Pseudomonas putida: Functional Analysis Using Random Barcode Transposon Sequencing. Applied and Environmental Microbiology. 86(21). 66 indexed citations

17.

Vuu, Khanh M., et al.. (2020). Engineering Plant Synthetic Pathways for the Biosynthesis of Novel Antifungals. ACS Central Science. 6(8). 1394–1400. 26 indexed citations

18.

Yang, Minliang, Nawa Raj Baral, Blake A. Simmons, et al.. (2020). Accumulation of high-value bioproducts in planta can improve the economics of advanced biofuels. Proceedings of the National Academy of Sciences. 117(15). 8639–8648. 55 indexed citations

19.

Thompson, Mitchell G., Zak Costello, Pablo Cruz‐Morales, et al.. (2019). Robust Characterization of Two Distinct Glutarate Sensing Transcription Factors of Pseudomonas putida l -Lysine Metabolism. ACS Synthetic Biology. 8(10). 2385–2396. 22 indexed citations

20.

Carnevali, Paula B. Matheus, Frederik Schulz, Cindy J. Castelle, et al.. (2019). Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria. Nature Communications. 10(1). 463–463. 52 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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