NISC Comparative Sequencing Program

3.5k citations

22 papers · 1.6k indexed · 1 hit paper · h-index 14

Impact in

Molecular Biology top 10%
- Genomics and Phylogenetic Studies
- RNA and protein synthesis mechanisms
- Genomics and Chromatin Dynamics
- RNA Research and Splicing
- Developmental Biology and Gene Regulation
- RNA modifications and cancer
Genetics top 5%
- Genetic diversity and population structure

Papers in ⓘ

Genetics 9
- Genetic diversity and population structure 2
Cell Biology 4
- melanin and skin pigmentation 3

Co-authors: Eric D. Green (6 shared papers)Gregory M. Cooper (2 shared papers)Michael Brudno (2 shared papers)Arend Sidow (2 shared papers)Serafim Batzoglou (2 shared papers)Eugene Davydov (1 shared paper)Elliott H. Margulies (4 shared papers)Eray Tüzün (1 shared paper)
Journals: Genome Research (5 papers)Human Mutation (2 papers)Molecular Genetics and Metabolism (2 papers)PLoS Genetics (2 papers)Journal of Investigative Dermatology (2 papers)
Partner nations: United States Australia United Kingdom

In The Last Decade

NISC Comparative Sequencing Program

22 papers receiving 1.6k citations

Hit Papers

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LAGAN and Multi-LAGAN: Efficient Tools for Large-Scale Multiple Alignment of Genomic DNA 2003 · 876 citations

Peers

Countries citing papers authored by NISC Comparative Sequencing Program

Since Specialization

Citations

This map shows the geographic impact of NISC Comparative Sequencing Program's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by NISC Comparative Sequencing Program with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites NISC Comparative Sequencing Program more than expected).

Fields of papers citing papers by NISC Comparative Sequencing Program

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by NISC Comparative Sequencing Program. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by NISC Comparative Sequencing Program. The network helps show where NISC Comparative Sequencing Program may publish in the future.

Co-authors

The 25 scholars most cited alongside NISC Comparative Sequencing Program, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with NISC Comparative Sequencing Program Line = papers co-authored together NISC Comparative Sequencing Program links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

Showing the 20 most-cited of 22 papers — load more, or switch the sort, to bring in the rest.

#	Work
1	LAGAN and Multi-LAGAN: Efficient Tools for Large-Scale Multiple Alignment of Genomic DNA Genome Research ·Michael Brudno, (unknown), Gregory M. Cooper, Michael F. Kim, Eugene Davydov, NISC Comparative Sequencing Program, Eric D. Green, Arend Sidow, Serafim Batzoglou Hit paper breakdown →	2003	876
2	Analysis of Primate Genomic Variation Reveals a Repeat-Driven Expansion of the Human Genome Genome Research ·Ge Liu, NISC Comparative Sequencing Program, Shaying Zhao, Jeffrey A. Bailey, S. Cenk Şahinalp, Can Alkan, Eray Tüzün, Eric D. Green, Evan E. Eichler	2003	117
3	A Loss-of-Function Variant in the Human Histidyl-tRNA Synthetase (HARS) Gene is Neurotoxic In Vivo Human Mutation ·Aimée Vester, Gisselle A. Vélez-Ruiz, Heather M. McLaughlin, NISC Comparative Sequencing Program, James R. Lupski, Kevin Talbot, Jeffery M. Vance, Stephan Züchner, Ricardo H. Roda, Kenneth H. Fischbeck, Leslie G. Biesecker, Garth A. Nicholson, Asim A. Beg, Anthony Antonellis	2012	91
4	Quantitative Estimates of Sequence Divergence for Comparative Analyses of Mammalian Genomes Genome Research ·Gregory M. Cooper, Michael Brudno, NISC Comparative Sequencing Program, Eric D. Green, Serafim Batzoglou, Arend Sidow	2003	90
5	Early History of Mammals Is Elucidated with the ENCODE Multiple Species Sequencing Data PLoS Genetics ·Sergey I. Nikolaev, Juan I. Montoya‐Burgos, Elliott H. Margulies, NISC Comparative Sequencing Program, Jacques Rougemont, Bruno Nyffeler, Stylianos E. Antonarakis	2006	89
6	Resolving the Complexity of Human Skin Metagenomes Using Single-Molecule Sequencing mBio ·Yu‐Chih Tsai, Sean Conlan, Clayton Deming, NISC Comparative Sequencing Program, Julia A. Segre, Heidi H. Kong, Jonas Korlach, Julia Oh	2016	58
7	Homozygosity Mapping and Whole-Exome Sequencing to Detect SLC45A2 and G6PC3 Mutations in a Single Patient with Oculocutaneous Albinism and Neutropenia Journal of Investigative Dermatology ·Andrew R. Cullinane, Thierry Vilboux, Kevin O’Brien, James A. Curry, Dawn Maynard, Hannah Carlson-Donohoe, Carla Ciccone, NISC Comparative Sequencing Program, Thomas C. Markello, Meral Gunay‐Aygun, Marjan Huizing, William A. Gahl	2011	52
8	Pericentromeric Duplications in the Laboratory Mouse Genome Research ·James W. Thomas, Mary G. Schueler, Tyrone J. Summers, Robert W. Blakesley, Jennifer C. McDowell, Pamela J. Thomas, Jacquelyn R. Idol, Valerie V. Maduro, Shih-Queen Lee-Lin, Jeffrey W. Touchman, Gerard G. Bouffard, Stephen M. Beckstrom‐Sternberg, NISC Comparative Sequencing Program, Eric D. Green	2002	30
9	Genetic Modifiers of Neurofibromatosis Type 1-Associated Café-au-Lait Macule Count Identified Using Multi-platform Analysis PLoS Genetics ·Alexander Pemov, Heejong Sung, Paula L. Hyland, Jennifer L. Sloan, Sarah L. Ruppert, Andrea Baldwin, Joseph F. Boland, Sara Bass, Hyo‐Jung Lee, Kristine Jones, Xijun Zhang, NISC Comparative Sequencing Program, James C. Mullikin, Brigitte C. Widemann, Alexander F. Wilson, Douglas R. Stewart	2014	24
10	Comparative sequence analyses reveal sites of ancestral chromosomal fusions in the Indian muntjac genome Genome biology ·Vicky Tsipouri, Mary G. Schueler, Sufen Hu, NISC Comparative Sequencing Program, Amalia Dutra, Evgenia Pak, Harold Riethman, Eric D. Green	2008	22
11	Estimation of DNA Sequence Context-dependent Mutation Rates Using Primate Genomic Sequences Journal of Molecular Evolution ·Wei Zhang, Gerard G. Bouffard, Susan S. Wallace, Jeffrey P. Bond, NISC Comparative Sequencing Program	2007	20
12	Novel somatic mutations in heterotrimeric G proteins in melanoma Cancer Biology & Therapy ·Laura I. Cárdenas-Navia, Pedro Cruz, Jimmy Lin, NISC Comparative Sequencing Program, Steven A. Rosenberg, Yardena Samuels	2010	18
13	Somatic Mutations in MAP3K5 Attenuate Its Proapoptotic Function in Melanoma through Increased Binding to Thioredoxin Journal of Investigative Dermatology ·Todd D. Prickett, Brad J. Zerlanko, Jared J. Gartner, Stephen C.J. Parker, Ken Dutton‐Regester, Jimmy Lin, Jamie K. Teer, Xiaomu Wei, Jiji Jiang, NISC Comparative Sequencing Program, Guo Chen, Michael A. Davies, Jeffrey E. Gershenwald, William A. Robinson, Steven I. Robinson, Nicholas K. Hayward, Steven A. Rosenberg, Elliott H. Margulies, Yardena Samuels	2013	18
14	The transcription factors Ets1 and Sox10 interact during murine melanocyte development Developmental Biology ·Amy Saldana-Caboverde, Erasmo M. Perera, Dawn E. Watkins‐Chow, Nancy F. Hansen, Meghana Vemulapalli, James C. Mullikin, NISC Comparative Sequencing Program, William J. Pavan, Lidia Kos	2015	15
15	Comparative analysis of the primate X-inactivation center region and reconstruction of the ancestral primate XIST locus Genome Research ·Julie E. Horvath, Christina B. Sheedy, Stephanie L. Merrett, Abdoulaye Baniré Diallo, David L. Swofford, NISC Comparative Sequencing Program, Eric D. Green, Huntington F. Willard	2011	13
16	Detecting Highly Conserved Regions of the Human Genome by Multispecies Sequence Comparisons Cold Spring Harbor Symposia on Quantitative Biology ·Elliott H. Margulies, NISC Comparative Sequencing Program, E.D. GREEN	2003	12
17	Personalized genomic medicine: Lessons from the exome Molecular Genetics and Metabolism ·Benjamin D. Solomon, Daniel Pineda‐Alvarez, Donald W. Hadley, NISC Comparative Sequencing Program, Jamie K. Teer, Praveen F. Cherukuri, Nancy F. Hansen, Pedro Cruz, Alice Young, Robert W. Blakesley, Brendan C. Lanpher, Stephanie Mayfield Gibson, Murat Sincan, Settara C. Chandrasekharappa, James C. Mullikin	2011	11
18	Recombination mapping using Boolean logic and high-density SNP genotyping for exome sequence filtering Molecular Genetics and Metabolism ·Thomas C. Markello, Sangwoo T. Han, Hannah Carlson-Donohoe, Chidi Ahaghotu, Ursula L. Harper, MaryPat Jones, Settara C. Chandrasekharappa, Yair Anikster, David R. Adams, NISC Comparative Sequencing Program, William A. Gahl, Cornelius F. Boerkoel	2011	11
19	Identification of candidate genes involved in coronary artery calcification by transcriptome sequencing of cell lines BMC Genomics ·Shurjo K. Sen, Jennifer J. Barb, Praveen F. Cherukuri, David S. Accame, Abdel G. Elkahloun, Larry N. Singh, Shih-Queen Lee-Lin, NISC Comparative Sequencing Program, Frank D. Kolodgie, Qi Cheng, Xiaoqing Zhao, Marcus Y. Chen, Andrew E. Arai, Eric D. Green, James C. Mullikin, Peter J. Munson, Leslie G. Biesecker	2014	8
20	A custom capture sequence approach for oculocutaneous albinism identifies structural variant alleles at the OCA2 locus Human Mutation ·Stacie K. Loftus, Linnea Lundh, Dawn E. Watkins‐Chow, Laura L. Baxter, Erola Pairo‐Castineira, NISC Comparative Sequencing Program, Ian J. Jackson, William S. Oetting, William J. Pavan, David R. Adams	2021	7

About NISC Comparative Sequencing Program

NISC Comparative Sequencing Program is a scholar working on Genetics, Cell Biology, Molecular Biology, Virology and Immunology and Allergy, having authored 22 papers that have together received 1.6k indexed citations. Recurring topics across this work include Genomics and Phylogenetic Studies (9 papers), Chromosomal and Genetic Variations (6 papers), RNA and protein synthesis mechanisms (3 papers), melanin and skin pigmentation (3 papers), Machine Learning in Bioinformatics (2 papers), Epigenetics and DNA Methylation (2 papers), RNA Research and Splicing (2 papers) and Genetic diversity and population structure (2 papers). The work is most often cited by research in Molecular Biology (1.2k citations), Genetics (485 citations), Plant Science (478 citations), Paleontology (58 citations) and Aging (12 citations). NISC Comparative Sequencing Program has collaborated with scholars based in United States, Australia and United Kingdom. Frequent co-authors include Eric D. Green, Gregory M. Cooper, Michael Brudno, Arend Sidow, Serafim Batzoglou, Eugene Davydov, Elliott H. Margulies, Eray Tüzün, Evan E. Eichler and Can Alkan. Their work appears in journals such as Genome Research, Human Mutation, Molecular Genetics and Metabolism, PLoS Genetics and Journal of Investigative Dermatology.

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