Naveed Ishaque

8.0k total citations · 1 hit paper
33 papers, 1.1k citations indexed

About

Naveed Ishaque is a scholar working on Molecular Biology, Plant Science and Cancer Research. According to data from OpenAlex, Naveed Ishaque has authored 33 papers receiving a total of 1.1k indexed citations (citations by other indexed papers that have themselves been cited), including 17 papers in Molecular Biology, 6 papers in Plant Science and 5 papers in Cancer Research. Recurrent topics in Naveed Ishaque's work include Single-cell and spatial transcriptomics (8 papers), Plant-Microbe Interactions and Immunity (6 papers) and Cancer Genomics and Diagnostics (4 papers). Naveed Ishaque is often cited by papers focused on Single-cell and spatial transcriptomics (8 papers), Plant-Microbe Interactions and Immunity (6 papers) and Cancer Genomics and Diagnostics (4 papers). Naveed Ishaque collaborates with scholars based in Germany, United States and United Kingdom. Naveed Ishaque's co-authors include Roland Eils, Matthias Schlesner, Jonathan D. G. Jones, Zuguang Gu, Sophie J. M. Piquerez, Georgina Fabro, Marie‐Cécile Caillaud, Jens Steinbrenner, Jim Beynon and Christian Conrad and has published in prestigious journals such as Journal of Clinical Investigation, Nature Communications and Blood.

In The Last Decade

Naveed Ishaque

31 papers receiving 1.1k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Optimizing Xenium In Situ data utility by quality assessment and best-practice analysis workflows

2025 25 citations Sergio Marco Salas, Louis B. Kuemmerle et al. Nature Methods profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Naveed Ishaque Germany	16	458	433	179	117	106	33	1.1k
Shuai Xiao China	16	533 1.2×	186 0.4×	162 0.9×	260 2.2×	85 0.8×	61	1.1k
Kate H. Brettingham‐Moore Australia	13	491 1.1×	266 0.6×	115 0.6×	83 0.7×	49 0.5×	19	674
Georg Busslinger Netherlands	11	780 1.7×	198 0.5×	134 0.7×	79 0.7×	186 1.8×	16	1.1k
Koji Kikuchi Japan	20	962 2.1×	115 0.3×	158 0.9×	205 1.8×	82 0.8×	41	1.2k
Uwe Galli Germany	10	622 1.4×	175 0.4×	122 0.7×	372 3.2×	71 0.7×	11	812
Alexandre How‐Kit France	16	470 1.0×	271 0.6×	251 1.4×	158 1.4×	39 0.4×	37	895
Annaïck Carles Canada	18	887 1.9×	313 0.7×	256 1.4×	241 2.1×	79 0.7×	31	1.2k
Nina Thiessen Canada	11	1.6k 3.4×	166 0.4×	128 0.7×	207 1.8×	143 1.3×	16	2.0k
Kadir C. Akdemir United States	13	1.1k 2.4×	103 0.2×	208 1.2×	324 2.8×	143 1.3×	22	1.5k
Sjoerd J.B. Holwerda Netherlands	10	1.2k 2.6×	334 0.8×	51 0.3×	91 0.8×	169 1.6×	10	1.4k

Countries citing papers authored by Naveed Ishaque

Since Specialization

Citations

This map shows the geographic impact of Naveed Ishaque's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Naveed Ishaque with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Naveed Ishaque more than expected).

Fields of papers citing papers by Naveed Ishaque

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Naveed Ishaque. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Naveed Ishaque. The network helps show where Naveed Ishaque may publish in the future.

Co-authorship network of co-authors of Naveed Ishaque

This figure shows the co-authorship network connecting the top 25 collaborators of Naveed Ishaque. A scholar is included among the top collaborators of Naveed Ishaque based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Naveed Ishaque. Naveed Ishaque is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Tiesmeyer, Sebastian, et al.. (2026). Identifying 3D signal overlaps in spatial transcriptomics data with ovrlpy. Nature Biotechnology.

Salas, Sergio Marco, Louis B. Kuemmerle, Christophe Avenel, et al.. (2025). Optimizing Xenium In Situ data utility by quality assessment and best-practice analysis workflows. Nature Methods. 22(4). 813–823. 25 indexed citations breakdown →

Eils, Roland, et al.. (2025). SpatialLeiden: spatially aware Leiden clustering. Genome biology. 26(1). 24–24. 1 indexed citations

Ishaque, Naveed, et al.. (2024). A mini-review on perturbation modelling across single-cell omic modalities. Computational and Structural Biotechnology Journal. 23. 1886–1896. 14 indexed citations

Tiesmeyer, Sebastian, et al.. (2024). Sainsc: A Computational Tool for Segmentation‐Free Analysis of In Situ Capture Data. Small Methods. 9(5). e2401123–e2401123. 2 indexed citations

Hegazy, Ahmed N., Caroline Peine, Isabel Panse, et al.. (2024). Plasticity and lineage commitment of individual T_H1 cells are determined by stable T-bet expression quantities. Science Advances. 10(23). eadk2693–eadk2693. 6 indexed citations

Debnath, Olivia, Naveed Ishaque, Jane Skjøth‐Rasmussen, et al.. (2024). Immunotherapy drives mesenchymal tumor cell state shift and TME immune response in glioblastoma patients. Neuro-Oncology. 26(8). 1453–1466. 7 indexed citations

Messingschlager, Marey, Sebastian D. Mackowiak, Matthias Bieg, et al.. (2023). Genome-wide DNA methylation sequencing identifies epigenetic perturbations in the upper airways under long-term exposure to moderate levels of ambient air pollution. Environmental Research. 233. 116413–116413. 5 indexed citations

Rodríguez-Fos, Elias, Mercè Planas-Fèlix, Martin Burkert, et al.. (2023). Mutational topography reflects clinical neuroblastoma heterogeneity. Cell Genomics. 3(10). 100402–100402. 8 indexed citations

10.

Krieger, Teresa G., Solange Le Blanc, Julia Jabs, et al.. (2021). Single-cell analysis of patient-derived PDAC organoids reveals cell state heterogeneity and a conserved developmental hierarchy. Nature Communications. 12(1). 5826–5826. 75 indexed citations

11.

Haller, Florian, Fulvia Ferrazzi, Michael Michal, et al.. (2021). Lipomatous Solitary Fibrous Tumors Harbor Rare NAB2-STAT6 Fusion Variants and Show Up-Regulation of the Gene PPARG, Encoding for a Regulator of Adipocyte Differentiation. American Journal Of Pathology. 191(7). 1314–1324. 6 indexed citations

12.

Park, Jeongbin, Sebastian Tiesmeyer, Brian Long, et al.. (2021). Author Correction: Cell segmentation-free inference of cell types from in situ transcriptomics data. Nature Communications. 12(1). 4103–4103. 1 indexed citations

13.

Park, Jeongbin, Sebastian Tiesmeyer, Brian Long, et al.. (2021). Cell segmentation-free inference of cell types from in situ transcriptomics data. Nature Communications. 12(1). 3545–3545. 75 indexed citations

14.

Feng, Bohai, Ying Shen, Xavier Pastor Hostench, et al.. (2020). Integrative Analysis of Multi-omics Data Identified EGFR and PTGS2 as Key Nodes in a Gene Regulatory Network Related to Immune Phenotypes in Head and Neck Cancer. Clinical Cancer Research. 26(14). 3616–3628. 33 indexed citations

15.

Olins, Ada L., Vladimir B. Teif, Matthias Bieg, et al.. (2020). Whole-genome fingerprint of the DNA methylome during chemically induced differentiation of the human AML cell line HL-60/S4. Biology Open. 9(2). 2 indexed citations

16.

Teif, Vladimir B., et al.. (2020). Linker histone epitopes are hidden by in situ higher-order chromatin structure. Epigenetics & Chromatin. 13(1). 26–26. 4 indexed citations

17.

Tosti, Luca, Yan Hang, Olivia Debnath, et al.. (2020). Single-Nucleus and In Situ RNA–Sequencing Reveal Cell Topographies in the Human Pancreas. Gastroenterology. 160(4). 1330–1344.e11. 118 indexed citations

18.

Smits, M, Katharina Zoldan, Naveed Ishaque, et al.. (2019). Follicular T helper cells shape the HCV-specific CD4+ T cell repertoire after virus elimination. Journal of Clinical Investigation. 130(2). 998–1009. 42 indexed citations

19.

Asai, Shuta, Oliver J. Furzer, Volkan Çevik, et al.. (2018). A downy mildew effector evades recognition by polymorphism of expression and subcellular localization. Nature Communications. 9(1). 5192–5192. 32 indexed citations

20.

Badel, Jorge L., Sophie J. M. Piquerez, David L. Greenshields, et al.. (2013). In Planta Effector Competition Assays DetectHyaloperonospora arabidopsidisEffectors That Contribute to Virulence and Localize to Different Plant Subcellular Compartments. Molecular Plant-Microbe Interactions. 26(7). 745–757. 16 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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