Mikhail Pachkov

3.9k total citations · 2 hit papers
31 papers, 2.4k citations indexed

About

Mikhail Pachkov is a scholar working on Molecular Biology, Atomic and Molecular Physics, and Optics and Spectroscopy. According to data from OpenAlex, Mikhail Pachkov has authored 31 papers receiving a total of 2.4k indexed citations (citations by other indexed papers that have themselves been cited), including 18 papers in Molecular Biology, 10 papers in Atomic and Molecular Physics, and Optics and 9 papers in Spectroscopy. Recurrent topics in Mikhail Pachkov's work include Advanced Chemical Physics Studies (10 papers), Genomics and Chromatin Dynamics (9 papers) and Molecular Spectroscopy and Structure (8 papers). Mikhail Pachkov is often cited by papers focused on Advanced Chemical Physics Studies (10 papers), Genomics and Chromatin Dynamics (9 papers) and Molecular Spectroscopy and Structure (8 papers). Mikhail Pachkov collaborates with scholars based in Switzerland, United States and Germany. Mikhail Pachkov's co-authors include Erik van Nimwegen, Phil Arnold, Piotr J. Balwierz, Marek Tulej, Frederic Bertels, Paul B. Rainey, Olin Silander, Neha Tiwari, Nathalie Meyer‐Schaller and Gerhard Christofori and has published in prestigious journals such as Nucleic Acids Research, Nature Medicine and The Journal of Chemical Physics.

In The Last Decade

Mikhail Pachkov

31 papers receiving 2.4k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Sox4 Is a Master Regulator of Epithelial-Mesenchymal Transition by Controlling Ezh2 Expression and Epigenetic Reprogramming

2013 394 citations Neha Tiwari, Vijay Tiwari et al. Cancer Cell profile →
Automated Reconstruction of Whole-Genome Phylogenies from Short-Sequence Reads

2014 343 citations Frederic Bertels, Olin Silander et al. Molecular Biology and Evolution profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Mikhail Pachkov Switzerland	18	1.5k	470	277	276	275	31	2.4k
Dimitar Angelov France	35	3.0k 2.0×	306 0.7×	259 0.9×	231 0.8×	190 0.7×	98	3.7k
U. Thomas Meier United States	30	2.6k 1.7×	192 0.4×	260 0.9×	251 0.9×	192 0.7×	62	3.5k
Yusuke Okuno Japan	30	1.5k 0.9×	277 0.6×	494 1.8×	76 0.3×	505 1.8×	168	3.1k
Phillip A. Wilmarth United States	29	1.9k 1.2×	213 0.5×	134 0.5×	96 0.3×	224 0.8×	112	3.3k
Barbara A. Seaton United States	31	2.4k 1.5×	234 0.5×	82 0.3×	103 0.4×	471 1.7×	67	3.4k
C. James McKnight United States	30	2.0k 1.3×	109 0.2×	103 0.4×	132 0.5×	422 1.5×	73	2.9k
María J. Macias Spain	29	4.1k 2.6×	342 0.7×	682 2.5×	56 0.2×	352 1.3×	79	5.0k
Anita Lewit‐Bentley France	25	1.8k 1.2×	255 0.5×	86 0.3×	80 0.3×	404 1.5×	55	2.5k
Ünal Coskun Germany	29	2.5k 1.6×	104 0.2×	129 0.5×	200 0.7×	265 1.0×	47	3.0k

Countries citing papers authored by Mikhail Pachkov

Since Specialization

Citations

This map shows the geographic impact of Mikhail Pachkov's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Mikhail Pachkov with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Mikhail Pachkov more than expected).

Fields of papers citing papers by Mikhail Pachkov

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Mikhail Pachkov. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Mikhail Pachkov. The network helps show where Mikhail Pachkov may publish in the future.

Co-authorship network of co-authors of Mikhail Pachkov

This figure shows the co-authorship network connecting the top 25 collaborators of Mikhail Pachkov. A scholar is included among the top collaborators of Mikhail Pachkov based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Mikhail Pachkov. Mikhail Pachkov is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Mukhtar, Tanzila, Marcelo Boareto, Alice Grison, et al.. (2022). Temporal and sequential transcriptional dynamics define lineage shifts in corticogenesis. The EMBO Journal. 41(24). e111132–e111132. 8 indexed citations

Pachkov, Mikhail, Phil Arnold, Saeed Omidi, et al.. (2019). Crunch: integrated processing and modeling of ChIP-seq data in terms of regulatory motifs. Genome Research. 29(7). 1164–1177. 6 indexed citations

Omidi, Saeed, et al.. (2017). Automated incorporation of pairwise dependency in transcription factor binding site prediction using dinucleotide weight tensors. PLoS Computational Biology. 13(7). e1005176–e1005176. 8 indexed citations

Pemberton‐Ross, Peter, Mikhail Pachkov, & Erik van Nimwegen. (2015). ARMADA: Using motif activity dynamics to infer gene regulatory networks from gene expression data. Methods. 85. 62–74. 4 indexed citations

Balwierz, Piotr J., Mikhail Pachkov, Phil Arnold, et al.. (2014). ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs. Genome Research. 24(5). 869–884. 198 indexed citations

Bertels, Frederic, Olin Silander, Mikhail Pachkov, Paul B. Rainey, & Erik van Nimwegen. (2014). Automated Reconstruction of Whole-Genome Phylogenies from Short-Sequence Reads. Molecular Biology and Evolution. 31(5). 1077–1088. 343 indexed citations breakdown →

Gruber, Andreas, Piotr J. Balwierz, Mikhail Pachkov, et al.. (2014). Embryonic stem cell-specific microRNAs contribute to pluripotency by inhibiting regulators of multiple differentiation pathways. Nucleic Acids Research. 42(14). 9313–9326. 26 indexed citations

Tiwari, Neha, Vijay Tiwari, Lorenz Waldmeier, et al.. (2013). Sox4 Is a Master Regulator of Epithelial-Mesenchymal Transition by Controlling Ezh2 Expression and Epigenetic Reprogramming. Cancer Cell. 23(6). 768–783. 394 indexed citations breakdown →

Tiwari, Neha, Nathalie Meyer‐Schaller, Phil Arnold, et al.. (2013). Klf4 Is a Transcriptional Regulator of Genes Critical for EMT, Including Jnk1 (Mapk8). PLoS ONE. 8(2). e57329–e57329. 135 indexed citations

10.

Aceto, Nicola, Nina Sausgruber, Heike Brinkhaus, et al.. (2012). Tyrosine phosphatase SHP2 promotes breast cancer progression and maintains tumor-initiating cells via activation of key transcription factors and a positive feedback signaling loop. Nature Medicine. 18(4). 529–537. 210 indexed citations

11.

Arnold, Phil, Anne Schöler, Mikhail Pachkov, et al.. (2012). Modeling of epigenome dynamics identifies transcription factors that mediate Polycomb targeting. Genome Research. 23(1). 60–73. 89 indexed citations

12.

Pachkov, Mikhail, Piotr J. Balwierz, Phil Arnold, Evgeniy A. Ozonov, & Erik van Nimwegen. (2012). SwissRegulon, a database of genome-wide annotations of regulatory sites: recent updates. Nucleic Acids Research. 41(D1). D214–D220. 100 indexed citations

13.

Pipkin, Matthew E., et al.. (2009). MicroRNA-221–222 Regulate the Cell Cycle in Mast Cells. The Journal of Immunology. 182(1). 433–445. 82 indexed citations

14.

Schuster, Stefan, Axel von Kamp, & Mikhail Pachkov. (2007). Understanding the Roadmap of Metabolism by Pathway Analysis. Methods in molecular biology. 358. 199–226. 22 indexed citations

15.

Pachkov, Mikhail, Thomas Dandekar, Jan O. Korbel, Peer Bork, & Stefan Schuster. (2007). Use of pathway analysis and genome context methods for functional genomics of Mycoplasma pneumoniae nucleotide metabolism. Gene. 396(2). 215–225. 14 indexed citations

16.

Pachkov, Mikhail, Ionas Erb, Nacho Molina, & Erik van Nimwegen. (2006). SwissRegulon: a database of genome-wide annotations of regulatory sites. Nucleic Acids Research. 35(Database). D127–D131. 102 indexed citations

17.

Pino, Thomas, Marek Tulej, Felix Güthe, Mikhail Pachkov, & John P. Maier. (2002). Photodetachment spectroscopy of the C2nH− (n=2–4) anions in the vicinity of their electron detachment threshold. The Journal of Chemical Physics. 116(14). 6126–6131. 52 indexed citations

18.

Lakin, Nicholas M., Mikhail Pachkov, Marek Tulej, et al.. (2000). Theoretical and experimental study of the A2Πu–X2Πg band system of C7−. The Journal of Chemical Physics. 113(21). 9586–9592. 17 indexed citations

19.

Kirkwood, David A., H. Linnartz, T. Motylewski, et al.. (1999). GAS-PHASE ELECTRONIC SPECTRA OF CARBON CHAINS. Toxicology and Applied Pharmacology. 59(1). 71–83. 1 indexed citations

20.

Kirkwood, David A., H. Linnartz, Michel Grutter, et al.. (1998). Electronic spectroscopy of carbon chains and relevance to astrophysics. Faraday Discussions. 109. 109–119. 31 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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