Mattia Bernetti

2.0k total citations
22 papers, 477 citations indexed

About

Mattia Bernetti is a scholar working on Molecular Biology, Computational Theory and Mathematics and Materials Chemistry. According to data from OpenAlex, Mattia Bernetti has authored 22 papers receiving a total of 477 indexed citations (citations by other indexed papers that have themselves been cited), including 19 papers in Molecular Biology, 10 papers in Computational Theory and Mathematics and 5 papers in Materials Chemistry. Recurrent topics in Mattia Bernetti's work include Protein Structure and Dynamics (14 papers), Computational Drug Discovery Methods (10 papers) and RNA and protein synthesis mechanisms (8 papers). Mattia Bernetti is often cited by papers focused on Protein Structure and Dynamics (14 papers), Computational Drug Discovery Methods (10 papers) and RNA and protein synthesis mechanisms (8 papers). Mattia Bernetti collaborates with scholars based in Italy, Germany and Austria. Mattia Bernetti's co-authors include Andrea Cavalli, Matteo Masetti, Luca Mollica, Walter Rocchia, Maurizio Recanatini, Giovanni Bussi, Rommie E. Amaro, Djordje Müsil, Hans‐Michael Eggenweiler and Gerhard F. Ecker and has published in prestigious journals such as The Journal of Chemical Physics, SHILAP Revista de lepidopterología and The Journal of Physical Chemistry B.

In The Last Decade

Mattia Bernetti

22 papers receiving 471 citations

Peers

Countries citing papers authored by Mattia Bernetti

Since Specialization

Citations

This map shows the geographic impact of Mattia Bernetti's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Mattia Bernetti with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Mattia Bernetti more than expected).

Fields of papers citing papers by Mattia Bernetti

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Mattia Bernetti. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Mattia Bernetti. The network helps show where Mattia Bernetti may publish in the future.

Co-authorship network of co-authors of Mattia Bernetti

This figure shows the co-authorship network connecting the top 25 collaborators of Mattia Bernetti. A scholar is included among the top collaborators of Mattia Bernetti based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Mattia Bernetti. Mattia Bernetti is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Title	Journal	Authors	Indexed citations
1	Application of Deep Learning to Predict the Persistence, Bioaccumulation, and Toxicity of Pharmaceuticals	Journal of Chemical Information and Modeling	R. Skyner, Mattia Bernetti et al.	4
2	Path-Based Nonequilibrium Binding Free Energy Estimation, from Protein–Ligand to RNA-Ligand Binding	Journal of Chemical Information and Modeling	Mattia Bernetti, Sergio Decherchi et al.	1
3	Probing allosteric communication with combined molecular dynamics simulations and network analysis	Current Opinion in Structural Biology	Mattia Bernetti, Federico Falchi et al.	8
4	Similarities and Differences in Ligand Binding to Protein and RNA Targets: The Case of Riboflavin	Journal of Chemical Information and Modeling	Mattia Bernetti, Walter Rocchia et al.	1
5	Simultaneous refinement of molecular dynamics ensembles and forward models using experimental data	The Journal of Chemical Physics	Mattia Bernetti, Giovanni Bussi et al.	8
6	On the allosteric puzzle and pocket crosstalk through computational means	The Journal of Chemical Physics	Mattia Bernetti, Sergio Decherchi et al.	7
7	Molecular Dynamics Simulations with Grand-Canonical Reweighting Suggest Cooperativity Effects in RNA Structure Probing Experiments	Journal of Chemical Theory and Computation	Mattia Bernetti, Alisha Jones et al.	2
8	Computational drug discovery under RNA times	SHILAP Revista de lepidopterología	Mattia Bernetti, Maurizio Recanatini et al.	11
9	Integrating experimental data with molecular simulations to investigate RNA structural dynamics	Current Opinion in Structural Biology	Mattia Bernetti, Giovanni Bussi	20
10	Molecular Simulations Matching Denaturation Experiments for N⁶-Methyladenosine	ACS Central Science	Mattia Bernetti, Giovanni Bussi et al.	8
11	Molecular Dynamics of Solids at Constant Pressure and Stress Using Anisotropic Stochastic Cell Rescaling	Applied Sciences	Paolo Raiteri, Mattia Bernetti et al.	3
12	Comparing state-of-the-art approaches to back-calculate SAXS spectra from atomistic molecular dynamics simulations	The European Physical Journal B	Mattia Bernetti, Giovanni Bussi	12
13	Enhanced Molecular Dynamics Simulations of Intrinsically Disordered Proteins	Methods in molecular biology	Matteo Masetti, Mattia Bernetti et al.	4
14	Data-Driven Molecular Dynamics: A Multifaceted Challenge	Pharmaceuticals	Mattia Bernetti, Matteo Masetti et al.	26
15	An Integrated Markov State Model and Path Metadynamics Approach To Characterize Drug Binding Processes	Journal of Chemical Theory and Computation	Mattia Bernetti, Matteo Masetti et al.	47
16	Binding Residence Time through Scaled Molecular Dynamics: A Prospective Application to hDAAO Inhibitors	Journal of Chemical Information and Modeling	Mattia Bernetti, Elena Rosini et al.	22
17	Predicting Residence Time and Drug Unbinding Pathway through Scaled Molecular Dynamics	Journal of Chemical Information and Modeling	Doris A. Schuetz, Mattia Bernetti et al.	56
18	Structural and Kinetic Characterization of the Intrinsically Disordered Protein SeV N_TAIL through Enhanced Sampling Simulations	The Journal of Physical Chemistry B	Mattia Bernetti, Matteo Masetti et al.	23
19	Development of a multisite model for Ni(II) ion in solution from thermodynamic and kinetic data	Journal of Computational Chemistry	Matteo Masetti, Francesco Musiani et al.	10
20	Protein–ligand (un)binding kinetics as a new paradigm for drug discovery at the crossroad between experiments and modelling	MedChemComm	Mattia Bernetti, Andrea Cavalli et al.	76

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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