Matthew D. Brooks

2.0k total citations · 1 hit paper
30 papers, 1.4k citations indexed

About

Matthew D. Brooks is a scholar working on Plant Science, Molecular Biology and Atomic and Molecular Physics, and Optics. According to data from OpenAlex, Matthew D. Brooks has authored 30 papers receiving a total of 1.4k indexed citations (citations by other indexed papers that have themselves been cited), including 22 papers in Plant Science, 19 papers in Molecular Biology and 2 papers in Atomic and Molecular Physics, and Optics. Recurrent topics in Matthew D. Brooks's work include Plant Molecular Biology Research (12 papers), Photosynthetic Processes and Mechanisms (11 papers) and Plant nutrient uptake and metabolism (10 papers). Matthew D. Brooks is often cited by papers focused on Plant Molecular Biology Research (12 papers), Photosynthetic Processes and Mechanisms (11 papers) and Plant nutrient uptake and metabolism (10 papers). Matthew D. Brooks collaborates with scholars based in United States, Chile and France. Matthew D. Brooks's co-authors include Gloria M. Coruzzi, Krishna Niyogi, José M. Álvarez, Gabriel Krouk, Jessica A. Rodrigues, Bradley R. Dotson, Daniel Zilberman, Assaf Zemach, Rachel A. Okrent and Mary C. Wildermuth and has published in prestigious journals such as Proceedings of the National Academy of Sciences, Journal of Biological Chemistry and Nature Communications.

In The Last Decade

Matthew D. Brooks

29 papers receiving 1.4k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Nitrate in 2020: Thirty Years from Transport to Signaling Networks

2020 257 citations Elena A. Vidal, José M. Álvarez et al. The Plant Cell profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Matthew D. Brooks United States	15	1.2k	636	98	52	47	30	1.4k
Anne Marmagne France	24	2.0k 1.7×	1.0k 1.6×	40 0.4×	103 2.0×	28 0.6×	54	2.4k
Mirela Domijan United Kingdom	12	1.1k 1.0×	839 1.3×	41 0.4×	21 0.4×	45 1.0×	15	1.3k
Yukifumi Uesono Japan	15	434 0.4×	633 1.0×	42 0.4×	10 0.2×	29 0.6×	24	977
Noritoshi Inagaki Japan	21	978 0.8×	929 1.5×	104 1.1×	4 0.1×	84 1.8×	36	1.4k
Marianne Azzopardi France	12	1.1k 1.0×	629 1.0×	20 0.2×	32 0.6×	8 0.2×	15	1.3k
Stefan Meier United States	9	872 0.7×	310 0.5×	35 0.4×	46 0.9×	215 4.6×	13	1.0k
Shin Hamamoto Japan	16	841 0.7×	404 0.6×	30 0.3×	5 0.1×	32 0.7×	26	1.1k
Chi-Chou Chiu Taiwan	6	681 0.6×	365 0.6×	21 0.2×	77 1.5×	19 0.4×	7	899
Markus Teuber Germany	13	530 0.5×	453 0.7×	64 0.7×	3 0.1×	19 0.4×	18	925

Countries citing papers authored by Matthew D. Brooks

Since Specialization

Citations

This map shows the geographic impact of Matthew D. Brooks's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Matthew D. Brooks with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Matthew D. Brooks more than expected).

Fields of papers citing papers by Matthew D. Brooks

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Matthew D. Brooks. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Matthew D. Brooks. The network helps show where Matthew D. Brooks may publish in the future.

Co-authorship network of co-authors of Matthew D. Brooks

This figure shows the co-authorship network connecting the top 25 collaborators of Matthew D. Brooks. A scholar is included among the top collaborators of Matthew D. Brooks based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Matthew D. Brooks. Matthew D. Brooks is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Peeri, Noah C., Jamie K. Teer, Burt Nabors, et al.. (2025). Glioma grade and mortality in relation to sequence variation in the mitochondrial genome. Cancer Genetics. 294-295. 171–180. 1 indexed citations

Huang, Ji, et al.. (2025). Model-to-crop conserved NUE Regulons enhance machine learning predictions of nitrogen use efficiency. The Plant Cell. 37(5). 1 indexed citations

Shanks, Carly M., Matthew D. Brooks, Chia‐Yi Cheng, et al.. (2024). Nitrogen sensing and regulatory networks: it's about time and space. The Plant Cell. 36(5). 1482–1503. 18 indexed citations

Brooks, Matthew D., et al.. (2024). Biological nitrogen fixation maintains carbon/nitrogen balance and photosynthesis at elevated CO₂. Plant Cell & Environment. 47(6). 2178–2191. 7 indexed citations

Williams, Martin, et al.. (2023). First report of severe tolpyralate sensitivity in corn (Zea mays) discovers a novel genetic factor conferring crop response to a herbicide. Pest Management Science. 80(3). 1645–1653. 1 indexed citations

Huang, Ji, et al.. (2023). Building High-Confidence Gene Regulatory Networks by Integrating Validated TF–Target Gene Interactions Using ConnecTF. Methods in molecular biology. 2698. 195–220. 1 indexed citations

Brooks, Matthew D., et al.. (2022). The TARGET System: Rapid Identification of Direct Targets of Transcription Factors by Gene Regulation in Plant Cells. Methods in molecular biology. 2594. 1–12. 2 indexed citations

Shanks, Carly M., Ji Huang, Chia‐Yi Cheng, et al.. (2022). Validation of a high-confidence regulatory network for gene-to-NUE phenotype in field-grown rice. Frontiers in Plant Science. 13. 1006044–1006044. 7 indexed citations

Álvarez, José M., Matthew D. Brooks, Joseph Swift, & Gloria M. Coruzzi. (2021). Time-Based Systems Biology Approaches to Capture and Model Dynamic Gene Regulatory Networks. Annual Review of Plant Biology. 72(1). 105–131. 25 indexed citations

10.

Brooks, Matthew D., Manpreet S. Katari, José M. Álvarez, et al.. (2020). ConnecTF: A platform to integrate transcription factor–gene interactions and validate regulatory networks. PLANT PHYSIOLOGY. 185(1). 49–66. 38 indexed citations

11.

Vidal, Elena A., José M. Álvarez, Viviana Araus, et al.. (2020). Nitrate in 2020: Thirty Years from Transport to Signaling Networks. The Plant Cell. 32(7). 2094–2119. 257 indexed citations breakdown →

12.

Cirrone, Jacopo, Matthew D. Brooks, Richard Bonneau, Gloria M. Coruzzi, & Dennis Shasha. (2020). Author Correction: OutPredict: multiple datasets can improve prediction of expression and inference of causality. Scientific Reports. 10(1). 14141–14141. 1 indexed citations

13.

Álvarez, José M., Matthew D. Brooks, Angelo Pasquino, et al.. (2020). Transient genome-wide interactions of the master transcription factor NLP7 initiate a rapid nitrogen-response cascade. Nature Communications. 11(1). 1157–1157. 117 indexed citations

14.

Cirrone, Jacopo, Matthew D. Brooks, Richard Bonneau, Gloria M. Coruzzi, & Dennis Shasha. (2020). OutPredict: multiple datasets can improve prediction of expression and inference of causality. Scientific Reports. 10(1). 6804–6804. 14 indexed citations

15.

Li, Ying, Matthew D. Brooks, Rachel M. McCoy, et al.. (2019). SDG8-Mediated Histone Methylation and RNA Processing Function in the Response to Nitrate Signaling. PLANT PHYSIOLOGY. 182(1). 215–227. 24 indexed citations

16.

Brooks, Matthew D., Jacopo Cirrone, Angelo Pasquino, et al.. (2019). Network Walking charts transcriptional dynamics of nitrogen signaling by integrating validated and predicted genome-wide interactions. Nature Communications. 10(1). 1569–1569. 96 indexed citations

17.

Clausen, Casper Hyttel, Matthew D. Brooks, Tai‐De Li, et al.. (2014). Dynamic Mechanical Responses of Arabidopsis Thylakoid Membranes during PSII-Specific Illumination. Biophysical Journal. 106(9). 1864–1870. 11 indexed citations

18.

Onoa, Bibiana, Anna R. Schneider, Matthew D. Brooks, et al.. (2014). Atomic Force Microscopy of Photosystem II and Its Unit Cell Clustering Quantitatively Delineate the Mesoscale Variability in Arabidopsis Thylakoids. PLoS ONE. 9(7). e101470–e101470. 18 indexed citations

19.

Malnoë, Alizée, et al.. (2014). Distinct roles of the photosystem II protein PsbS and zeaxanthin in the regulation of light harvesting in plants revealed by fluorescence lifetime snapshots. Proceedings of the National Academy of Sciences. 111(49). 17498–17503. 49 indexed citations

20.

Okrent, Rachel A., Matthew D. Brooks, & Mary C. Wildermuth. (2009). Arabidopsis GH3.12 (PBS3) Conjugates Amino Acids to 4-Substituted Benzoates and Is Inhibited by Salicylate. Journal of Biological Chemistry. 284(15). 9742–9754. 121 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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