Jonathan M. Mudge

27.7k total citations
32 papers, 1.1k citations indexed

About

Jonathan M. Mudge is a scholar working on Molecular Biology, Genetics and Spectroscopy. According to data from OpenAlex, Jonathan M. Mudge has authored 32 papers receiving a total of 1.1k indexed citations (citations by other indexed papers that have themselves been cited), including 28 papers in Molecular Biology, 6 papers in Genetics and 5 papers in Spectroscopy. Recurrent topics in Jonathan M. Mudge's work include RNA and protein synthesis mechanisms (17 papers), RNA modifications and cancer (12 papers) and Genomics and Phylogenetic Studies (11 papers). Jonathan M. Mudge is often cited by papers focused on RNA and protein synthesis mechanisms (17 papers), RNA modifications and cancer (12 papers) and Genomics and Phylogenetic Studies (11 papers). Jonathan M. Mudge collaborates with scholars based in United Kingdom, United States and Russia. Jonathan M. Mudge's co-authors include Jennifer Harrow, Adam Frankish, Michael Sawyer, Anthony J. McMichael, Shilu Tong, Peter Baghurst, José M. González, Michael S. Jackson, Laurens Wilming and Roderic Guigó and has published in prestigious journals such as Nucleic Acids Research, Nature Communications and Journal of Clinical Oncology.

In The Last Decade

Jonathan M. Mudge

29 papers receiving 1.1k citations

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name h Career Trend Papers Cites
Jonathan M. Mudge United Kingdom 18 736 226 185 167 133 32 1.1k
Ståle Ellingsen Norway 14 565 0.8× 125 0.6× 41 0.2× 59 0.4× 195 1.5× 26 882
Sylvain Guibert France 16 1.3k 1.7× 507 2.2× 89 0.5× 65 0.4× 54 0.4× 27 1.6k
Zhibin Wang United States 14 1.3k 1.7× 268 1.2× 94 0.5× 41 0.2× 83 0.6× 19 1.5k
Yeming Xie United States 14 573 0.8× 134 0.6× 262 1.4× 48 0.3× 84 0.6× 24 832
N.L.A. Cacheiro United States 21 895 1.2× 626 2.8× 263 1.4× 355 2.1× 76 0.6× 39 1.4k
Huijuan Shi China 26 936 1.3× 361 1.6× 328 1.8× 191 1.1× 46 0.3× 81 2.0k
Kathleen M. Brundage United States 18 291 0.4× 35 0.2× 122 0.7× 75 0.4× 148 1.1× 38 770
Joseph A. Bedell United States 7 514 0.7× 182 0.8× 47 0.3× 240 1.4× 68 0.5× 7 936
Michio Fujiwara Japan 14 724 1.0× 270 1.2× 61 0.3× 24 0.1× 55 0.4× 33 1.1k
Tetsunari Fukushige United States 21 1.3k 1.8× 224 1.0× 21 0.1× 104 0.6× 44 0.3× 33 1.9k

Countries citing papers authored by Jonathan M. Mudge

Since Specialization
Citations

This map shows the geographic impact of Jonathan M. Mudge's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Jonathan M. Mudge with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Jonathan M. Mudge more than expected).

Fields of papers citing papers by Jonathan M. Mudge

Since Specialization
Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Jonathan M. Mudge. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Jonathan M. Mudge. The network helps show where Jonathan M. Mudge may publish in the future.

Co-authorship network of co-authors of Jonathan M. Mudge

This figure shows the co-authorship network connecting the top 25 collaborators of Jonathan M. Mudge. A scholar is included among the top collaborators of Jonathan M. Mudge based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Jonathan M. Mudge. Jonathan M. Mudge is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

20 of 20 papers shown
1.
Zheng, Chenfei, Jonathan M. Mudge, Michele Magrane, et al.. (2025). Evaluation of PE5 Entries on the Human Proteome Project Target List. Journal of Proteome Research. 24(7). 3507–3533.
2.
Fedorova, Alla D., Stephen J. Kiniry, Dmitry E. Andreev, Jonathan M. Mudge, & Pavel V. Baranov. (2024). Addendum: Thousands of human non-AUG extended proteoforms lack evidence of evolutionary selection among mammals. Nature Communications. 15(1). 228–228. 2 indexed citations
3.
Omenn, Gilbert S., Sandra Orchard, Lydie Lane, et al.. (2024). The 2024 Report on the Human Proteome from the HUPO Human Proteome Project. Journal of Proteome Research. 23(12). 5296–5311. 4 indexed citations
4.
Prensner, John R., Jennifer G. Abelin, Karl R. Clauser, et al.. (2023). What Can Ribo-Seq, Immunopeptidomics, and Proteomics Tell Us About the Noncanonical Proteome?. Molecular & Cellular Proteomics. 22(9). 100631–100631. 46 indexed citations
5.
Khan, Hina, et al.. (2023). Disparities in lung cancer screening in a diverse urban population and the impact of a community-based navigational program.. Journal of Clinical Oncology. 41(16_suppl). 6555–6555. 1 indexed citations
6.
Fedorova, Alla D., Stephen J. Kiniry, Dmitry E. Andreev, Jonathan M. Mudge, & Pavel V. Baranov. (2022). Thousands of human non-AUG extended proteoforms lack evidence of evolutionary selection among mammals. Nature Communications. 13(1). 7910–7910. 11 indexed citations
7.
Mills, James D., et al.. (2021). Non‐coding regulatory elements: Potential roles in disease and the case of epilepsy. Neuropathology and Applied Neurobiology. 48(3). e12775–e12775. 19 indexed citations
8.
Mudge, Jonathan M., et al.. (2020). Functional signatures of evolutionarily young CTCF binding sites. BMC Biology. 18(1). 132–132. 6 indexed citations
9.
Gómez‐Baena, Guadalupe, Stuart D. Armstrong, Mark Prescott, et al.. (2019). Molecular complexity of the major urinary protein system of the Norway rat, Rattus norvegicus. Scientific Reports. 9(1). 10757–10757. 18 indexed citations
10.
Mudge, Jonathan M., Irwin Jungreis, Toby Hunt, et al.. (2019). Discovery of high-confidence human protein-coding genes and exons by whole-genome PhyloCSF helps elucidate 118 GWAS loci. Genome Research. 29(12). 2073–2087. 43 indexed citations
11.
Mudge, Jonathan M. & Jennifer Harrow. (2016). The state of play in higher eukaryote gene annotation. Nature Reviews Genetics. 17(12). 758–772. 52 indexed citations
12.
Lagarde, Julien, Barbara Uszczyńska-Ratajczak, Javier Santoyo‐López, et al.. (2016). Extension of human lncRNA transcripts by RACE coupled with long-read high-throughput sequencing (RACE-Seq). Nature Communications. 7(1). 12339–12339. 58 indexed citations
13.
Wright, James C., Jonathan M. Mudge, Hendrik Weisser, et al.. (2016). Improving GENCODE reference gene annotation using a high-stringency proteogenomics workflow. Nature Communications. 7(1). 11778–11778. 56 indexed citations
14.
Mudge, Jonathan M. & Jennifer Harrow. (2015). Creating reference gene annotation for the mouse C57BL6/J genome assembly. Mammalian Genome. 26(9-10). 366–378. 120 indexed citations
15.
Mudge, Jonathan M., Adam Frankish, & Jennifer Harrow. (2013). Functional transcriptomics in the post-ENCODE era. Genome Research. 23(12). 1961–1973. 42 indexed citations
16.
Mudge, Jonathan M., Adam Frankish, Julio Fernandez-Banet, et al.. (2011). The Origins, Evolution, and Functional Potential of Alternative Splicing in Vertebrates. Molecular Biology and Evolution. 28(10). 2949–2959. 55 indexed citations
17.
Mudge, Jonathan M., Stuart D. Armstrong, Stuart McLaren, et al.. (2008). Dynamic instability of the major urinary protein gene family revealed by genomic and phenotypic comparisons between C57 and 129 strain mice. Genome biology. 9(5). R91–R91. 85 indexed citations
18.
Mudge, Jonathan M. & Michael S. Jackson. (2004). Evolutionary implications of pericentromeric gene expression in humans. Cytogenetic and Genome Research. 108(1-3). 47–57. 15 indexed citations
19.
Ventura, Mario, Jonathan M. Mudge, Sally F. Burn, et al.. (2003). Neocentromeres in 15q24-26 Map to Duplicons Which Flanked an Ancestral Centromere in 15q25. Genome Research. 13(9). 2059–2068. 94 indexed citations
20.
Tong, Shilu, Peter Baghurst, Anthony J. McMichael, Michael Sawyer, & Jonathan M. Mudge. (1996). Lifetime exposure to environmental lead and children's intelligence at 11-13 years: the Port Pirie cohort study. BMJ. 312(7046). 1569–1575. 143 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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