Jonathan Göke

20.3k total citations · 2 hit papers
40 papers, 2.8k citations indexed

About

Jonathan Göke is a scholar working on Molecular Biology, Cancer Research and Plant Science. According to data from OpenAlex, Jonathan Göke has authored 40 papers receiving a total of 2.8k indexed citations (citations by other indexed papers that have themselves been cited), including 33 papers in Molecular Biology, 9 papers in Cancer Research and 6 papers in Plant Science. Recurrent topics in Jonathan Göke's work include RNA modifications and cancer (13 papers), CRISPR and Genetic Engineering (11 papers) and Pluripotent Stem Cells Research (10 papers). Jonathan Göke is often cited by papers focused on RNA modifications and cancer (13 papers), CRISPR and Genetic Engineering (11 papers) and Pluripotent Stem Cells Research (10 papers). Jonathan Göke collaborates with scholars based in Singapore, Germany and United States. Jonathan Göke's co-authors include Huck‐Hui Ng, Xinyi Lu, Yun-Shen Chan, Yuk Kei Wan, Ploy N. Pratanwanich, Christopher Hendra, Guillaume Bourque, Pierre‐Étienne Jacques, LeeAnn Ramsay and Engin Cukuroglu and has published in prestigious journals such as Nature, Cell and Nucleic Acids Research.

In The Last Decade

Jonathan Göke

38 papers receiving 2.7k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Identification of differential RNA modifications from nanopore direct RNA sequencing with xPore

2021 197 citations Ploy N. Pratanwanich, Fei Yao et al. Nature Biotechnology profile →
Detection of m6A from direct RNA sequencing using a multiple instance learning framework

2022 144 citations Christopher Hendra, Ploy N. Pratanwanich et al. Nature Methods profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Jonathan Göke Singapore	26	2.3k	488	487	218	218	40	2.8k
Sandy Klemm United States	12	2.2k 1.0×	459 0.9×	229 0.5×	118 0.5×	236 1.1×	15	2.7k
Magda Bienko Sweden	24	3.6k 1.5×	713 1.5×	331 0.7×	440 2.0×	388 1.8×	48	3.8k
Nathan J. Bowen United States	26	1.9k 0.8×	435 0.9×	606 1.2×	408 1.9×	260 1.2×	49	2.8k
Ephraim Kenigsberg United States	11	2.9k 1.2×	390 0.8×	623 1.3×	245 1.1×	394 1.8×	15	3.5k
Yodai Takei United States	8	2.4k 1.0×	332 0.7×	238 0.5×	118 0.5×	263 1.2×	11	2.7k
Touati Benoukraf Singapore	23	1.5k 0.7×	487 1.0×	132 0.3×	285 1.3×	196 0.9×	47	2.0k
Esther T. Chan United States	16	3.3k 1.4×	492 1.0×	275 0.6×	124 0.6×	594 2.7×	22	3.8k
Yun-Shen Chan Singapore	16	3.0k 1.3×	288 0.6×	536 1.1×	102 0.5×	371 1.7×	25	3.3k
Pär G. Engström Sweden	18	1.9k 0.8×	552 1.1×	303 0.6×	144 0.7×	412 1.9×	25	2.4k
Pernette J. Verschure Netherlands	27	2.4k 1.0×	208 0.4×	345 0.7×	193 0.9×	405 1.9×	61	2.9k

Countries citing papers authored by Jonathan Göke

Since Specialization

Citations

This map shows the geographic impact of Jonathan Göke's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Jonathan Göke with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Jonathan Göke more than expected).

Fields of papers citing papers by Jonathan Göke

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Jonathan Göke. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Jonathan Göke. The network helps show where Jonathan Göke may publish in the future.

Co-authorship network of co-authors of Jonathan Göke

This figure shows the co-authorship network connecting the top 25 collaborators of Jonathan Göke. A scholar is included among the top collaborators of Jonathan Göke based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Jonathan Göke. Jonathan Göke is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

Samarakoon, Hiruna, Yuk Kei Wan, Sri Parameswaran, et al.. (2025). Leveraging basecaller’s move table to generate a lightweight k-mer model for nanopore sequencing analysis. Bioinformatics. 41(4). 1 indexed citations

Oomen, Marlies E., Diego Rodriguez‐Terrones, Mayuko Kurome, et al.. (2025). An atlas of transcription initiation reveals regulatory principles of gene and transposable element expression in early mammalian development. Cell. 188(4). 1156–1174.e20. 16 indexed citations

Boileau, Etienne, Janusz M. Bujnicki, Vivian G. Cheung, et al.. (2025). Unlocking the regulatory code of RNA: launching the Human RNome Project. Genome biology. 26(1). 367–367.

Ritchie, Matthew E., et al.. (2024). Flexiplex: a versatile demultiplexer and search tool for omics data. Bioinformatics. 40(3). 5 indexed citations

Chen, Ying, et al.. (2023). Context-aware transcript quantification from long-read RNA-seq data with Bambu. Nature Methods. 20(8). 1187–1195. 62 indexed citations

Hendra, Christopher, Ploy N. Pratanwanich, Yuk Kei Wan, et al.. (2022). Detection of m6A from direct RNA sequencing using a multiple instance learning framework. Nature Methods. 19(12). 1590–1598. 144 indexed citations breakdown →

Schmidt, Florian, Alexander Marx, Nina Baumgarten, et al.. (2021). Integrative analysis of epigenetics data identifies gene-specific regulatory elements. Nucleic Acids Research. 49(18). 10397–10418. 11 indexed citations

Wilm, Andreas, et al.. (2021). Reproducible, scalable, and shareable analysis pipelines with bioinformatics workflow managers. Nature Methods. 18(10). 1161–1168. 84 indexed citations

Wan, Yuk Kei, Christopher Hendra, Ploy N. Pratanwanich, & Jonathan Göke. (2021). Beyond sequencing: machine learning algorithms extract biology hidden in Nanopore signal data. Trends in Genetics. 38(3). 246–257. 65 indexed citations

10.

Pratanwanich, Ploy N., Fei Yao, Ying Chen, et al.. (2021). Identification of differential RNA modifications from nanopore direct RNA sequencing with xPore. Nature Biotechnology. 39(11). 1394–1402. 197 indexed citations breakdown →

11.

Huang, Kie Kyon, Jiawen Huang, Jeanie Wu, et al.. (2021). Long-read transcriptome sequencing reveals abundant promoter diversity in distinct molecular subtypes of gastric cancer. Genome biology. 22(1). 44–44. 50 indexed citations

12.

Demircioğlu, Deniz, Engin Cukuroglu, Tannistha Nandi, et al.. (2019). A Pan-cancer Transcriptome Analysis Reveals Pervasive Regulation through Alternative Promoters. Cell. 178(6). 1465–1477.e17. 131 indexed citations

13.

Vinh, Dang, Bernhard Strauss, Engin Cukuroglu, et al.. (2018). SRSF3 maintains transcriptome integrity in oocytes by regulation of alternative splicing and transposable elements. Cell Discovery. 4(1). 33–33. 41 indexed citations

14.

Venkatesan, Nandini, Jong Fu Wong, Yin Hoe Yau, et al.. (2017). EZH2 promotes neoplastic transformation through VAV interaction-dependent extranuclear mechanisms. Oncogene. 37(4). 461–477. 18 indexed citations

15.

Göke, Jonathan & Huck‐Hui Ng. (2016). CTRL + INSERT : retrotransposons and their contribution to regulation and innovation of the transcriptome. EMBO Reports. 17(8). 1131–1144. 53 indexed citations

16.

Göke, Jonathan, et al.. (2015). Dynamic Transcription of Distinct Classes of Endogenous Retroviral Elements Marks Specific Populations of Early Human Embryonic Cells. Cell stem cell. 16(2). 135–141. 252 indexed citations

17.

Yeo, Jia-Chi, Jianming Jiang, Daniel Yim, et al.. (2014). Klf2 Is an Essential Factor that Sustains Ground State Pluripotency. Cell stem cell. 14(6). 864–872. 94 indexed citations

18.

Chan, Yun-Shen, Jonathan Göke, Jia-Hui Ng, et al.. (2013). Induction of a Human Pluripotent State with Distinct Regulatory Circuitry that Resembles Preimplantation Epiblast. Cell stem cell. 13(6). 663–675. 300 indexed citations

19.

Sabroe, Ian, Jonathan Göke, Robert J. B. Nibbs, et al.. (2007). A Bayesian Approach to Copy-Number–Polymorphism Analysis in Nuclear Pedigrees. The American Journal of Human Genetics. 81(4). 808–812. 12 indexed citations

20.

Gellermann, Johanna, Jonathan Göke, Chie Hee Cho, et al.. (2007). Simulation of different applicator positions for treatment of a presacral tumour. International Journal of Hyperthermia. 23(1). 37–47. 25 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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