Jonathan Göke

20.3k citations

40 papers · 2.8k indexed · 2 hit papers · h-index 26

Impact in

Molecular Biology top 5%
- CRISPR and Genetic Engineering
- RNA modifications and cancer
- Pluripotent Stem Cells Research
- RNA Research and Splicing
- RNA and protein synthesis mechanisms
- Genomics and Phylogenetic Studies
Cancer Research top 5%
- Cancer-related molecular mechanisms research

Papers in ⓘ

Molecular Biology 33
- RNA modifications and cancer 13
- CRISPR and Genetic Engineering 11
- Pluripotent Stem Cells Research 10
- Genomics and Chromatin Dynamics 8
- Genomics and Phylogenetic Studies 7
- Epigenetics and DNA Methylation 6
- RNA and protein synthesis mechanisms 6
Cancer Research 9

Co-authors: Huck‐Hui Ng (10 shared papers)Xinyi Lu (6 shared papers)Yun-Shen Chan (5 shared papers)Yuk Kei Wan (5 shared papers)Christopher Hendra (3 shared papers)Ploy N. Pratanwanich (3 shared papers)Guillaume Bourque (2 shared papers)Pierre‐Étienne Jacques (2 shared papers)
Journals: Bioinformatics (4 papers)Cell stem cell (4 papers)Nature Methods (3 papers)Genome biology (3 papers)Stem Cells (2 papers)
Partner nations: Singapore Germany United States

In The Last Decade

Jonathan Göke

38 papers receiving 2.7k citations

Hit Papers

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Detection of m6A from direct RNA sequencing using a multiple instance learning framework 2022 · 144 citations

Peers

Countries citing papers authored by Jonathan Göke

Since Specialization

Citations

This map shows the geographic impact of Jonathan Göke's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Jonathan Göke with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Jonathan Göke more than expected).

Fields of papers citing papers by Jonathan Göke

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Jonathan Göke. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Jonathan Göke. The network helps show where Jonathan Göke may publish in the future.

Co-authors

The 25 scholars most cited alongside Jonathan Göke, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Jonathan Göke Line = papers co-authored together Jonathan Göke links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

Showing the 20 most-cited of 40 papers — load more, or switch the sort, to bring in the rest.

#	Work
1	The retrovirus HERVH is a long noncoding RNA required for human embryonic stem cell identity Nature Structural & Molecular Biology ·Xinyi Lu, Friedrich Sachs, LeeAnn Ramsay, Pierre‐Étienne Jacques, Jonathan Göke, Guillaume Bourque, Huck‐Hui Ng	2014	313
2	Induction of a Human Pluripotent State with Distinct Regulatory Circuitry that Resembles Preimplantation Epiblast Cell stem cell ·Yun-Shen Chan, Jonathan Göke, Jia-Hui Ng, Xinyi Lu, Kevin Andrew Uy Gonzales, Cheng-Peow Tan, Weiquan John Tng, Zhong-Zhi Hong, Yee Siang Lim, Huck‐Hui Ng	2013	300
3	Dynamic Transcription of Distinct Classes of Endogenous Retroviral Elements Marks Specific Populations of Early Human Embryonic Cells Cell stem cell ·Jonathan Göke, Xinyi Lu, Yun-Shen Chan, Huck‐Hui Ng, Lam-Ha Ly, Friedrich Sachs, Iwona Szczerbinska	2015	252
4	Identification of differential RNA modifications from nanopore direct RNA sequencing with xPore Nature Biotechnology ·Ploy N. Pratanwanich, Fei Yao, Ying Chen, Casslynn W.Q. Koh, Yuk Kei Wan, Christopher Hendra, Polly Poon, Yeek Teck Goh, Phoebe M. L. Yap, Jing Yuan Chooi, Wee Joo Chng, Sarah Ng, Alexandre H. Thiéry, W.S. Sho Goh, Jonathan Göke Hit paper breakdown →	2021	197
5	Detection of m6A from direct RNA sequencing using a multiple instance learning framework Nature Methods ·Christopher Hendra, Ploy N. Pratanwanich, Yuk Kei Wan, W.S. Sho Goh, Alexandre H. Thiéry, Jonathan Göke Hit paper breakdown →	2022	144
6	Reduced Oct4 Expression Directs a Robust Pluripotent State with Distinct Signaling Activity and Increased Enhancer Occupancy by Oct4 and Nanog Cell stem cell ·Violetta Karwacki-Neisius, Jonathan Göke, Rodrigo Osorno, Florian Halbritter, Jia Hui Ng, Andrea Y. Weiße, Frederick C.K. Wong, Alessia Gagliardi, Nicholas P. Mullin, Nicola Festuccia, Douglas Colby, Simon R. Tomlinson, Huck‐Hui Ng, Ian Chambers	2013	138
7	A Pan-cancer Transcriptome Analysis Reveals Pervasive Regulation through Alternative Promoters Cell ·Deniz Demircioğlu, Engin Cukuroglu, Martin Kindermans, Tannistha Nandi, Claudia Calabrese, Nuno A. Fonseca, André Kahles, Kjong-Van Lehmann, Oliver Stegle, Alvis Brāzma, Angela N. Brooks, Gunnar Rätsch, Patrick Tan, Jonathan Göke	2019	131
8	Tumor-associated B cells and humoral immune response in head and neck squamous cell carcinoma OncoImmunology ·Axel Lechner, Hans Schlößer, Martin Thelen, Kerstin Wennhold, Sacha I. Rothschild, Ramona Gilles, Alexander Quaas, Oliver Siefer, Christian U. Huebbers, Engin Cukuroglu, Jonathan Göke, Axel M. Hillmer, Birgit Gathof, Moritz Meyer, Jens Peter Klußmann, Alexander Shimabukuro‐Vornhagen, Sebastian Theurich, Dirk Beutner, Michael von Bergwelt‐Baildon	2019	113
9	Klf2 Is an Essential Factor that Sustains Ground State Pluripotency Cell stem cell ·Jia-Chi Yeo, Jianming Jiang, Zi-Ying Tan, Daniel Yim, Jia-Hui Ng, Jonathan Göke, Petra Kraus, Hongqing Liang, Kevin Andrew Uy Gonzales, Han-Chung Chong, Cheng-Peow Tan, Yee Siang Lim, Nguan Soon Tan, Thomas Lufkin, Huck‐Hui Ng	2014	94
10	Reproducible, scalable, and shareable analysis pipelines with bioinformatics workflow managers Nature Methods ·Laura Wratten, Andreas Wilm, Jonathan Göke	2021	84
11	Genome-wide Kinase-Chromatin Interactions Reveal the Regulatory Network of ERK Signaling in Human Embryonic Stem Cells Molecular Cell ·Jonathan Göke, Yun-Shen Chan, Junli Yan, Martin Vingron, Huck‐Hui Ng	2013	78
12	Zscan4c activates endogenous retrovirus MERVL and cleavage embryo genes Nucleic Acids Research ·Weiyu Zhang, Fuquan Chen, Ruiqing Chen, Dan Xie, Jiao Yang, Xin Zhao, Renpeng Guo, Yongwang Zhang, Yang Shen, Jonathan Göke, Lin Liu, Xinyi Lu	2019	77
13	Molecular Features Underlying Neurodegeneration Identified through In Vitro Modeling of Genetically Diverse Parkinson’s Disease Patients Cell Reports ·Lin Lin, Jonathan Göke, Engin Cukuroglu, Mark R. Dranias, Antonius M.J. VanDongen, Lawrence W. Stanton	2016	68
14	SON connects the splicing-regulatory network with pluripotency in human embryonic stem cells Nature Cell Biology ·Xinyi Lu, Jonathan Göke, Friedrich Sachs, Pierre‐Étienne Jacques, Hongqing Liang, Bo Feng, Guillaume Bourque, Paula A. Bubulya, Huck‐Hui Ng	2013	67
15	Beyond sequencing: machine learning algorithms extract biology hidden in Nanopore signal data Trends in Genetics ·Yuk Kei Wan, Christopher Hendra, Ploy N. Pratanwanich, Jonathan Göke	2021	65
16	Context-aware transcript quantification from long-read RNA-seq data with Bambu Nature Methods ·Ying Chen, Andre Sim, Yuk Kei Wan, Keith Yeo, Joseph Lee, Min Hao Ling, Michael I. Love, Jonathan Göke	2023	62
17	A PRC2-Dependent Repressive Role of PRDM14 in Human Embryonic Stem Cells and Induced Pluripotent Stem Cell Reprogramming Stem Cells ·Yun-Shen Chan, Jonathan Göke, Xinyi Lu, Nandini Venkatesan, Bo Feng, I-hsin Su, Huck‐Hui Ng	2012	57
18	B cells in esophago-gastric adenocarcinoma are highly differentiated, organize in tertiary lymphoid structures and produce tumor-specific antibodies OncoImmunology ·Hans Schlößer, Martin Thelen, Axel Lechner, Kerstin Wennhold, María A. García-Márquez, Sacha I. Rothschild, E Staib, Thomas Zander, Dirk Beutner, Birgit Gathof, Ramona Gilles, Engin Cukuroglu, Jonathan Göke, Alexander Shimabukuro‐Vornhagen, Uta Drebber, Alexander Quaas, Christiane J. Bruns, Arnulf H. Hölscher, Michael S. von Bergwelt‐Baildon	2018	55
19	CTRL + INSERT : retrotransposons and their contribution to regulation and innovation of the transcriptome EMBO Reports ·Jonathan Göke, Huck‐Hui Ng	2016	53
20	Localized Plasticity in the Streamlined Genomes of Vinyl Chloride Respiring <em>Dehalococcoides</em> Figshare ·Paul J. McMurdie, Sebastian Behrens, Jochen A. Müller, Jonathan Göke, Kirsti M. Ritalahti, Ryan D. Wagner, Eugene Goltsman, Alla Lapidus, Susan Holmes, Frank E. Löffler, Alfred M. Spormann	2016	52

About Jonathan Göke

Jonathan Göke is a scholar working on Molecular Biology, Cancer Research, Plant Science, Oncology and Cellular and Molecular Neuroscience, having authored 40 papers that have together received 2.8k indexed citations. Recurring topics across this work include RNA modifications and cancer (13 papers), CRISPR and Genetic Engineering (11 papers), Pluripotent Stem Cells Research (10 papers), Genomics and Chromatin Dynamics (8 papers), Genomics and Phylogenetic Studies (7 papers), Epigenetics and DNA Methylation (6 papers), Chromosomal and Genetic Variations (6 papers) and RNA and protein synthesis mechanisms (6 papers). The work is most often cited by research in Molecular Biology (2.3k citations), Cancer Research (488 citations), Aging (25 citations), Plant Science (487 citations) and Immunology (191 citations). Jonathan Göke has collaborated with scholars based in Singapore, Germany and United States. Frequent co-authors include Huck‐Hui Ng, Xinyi Lu, Yun-Shen Chan, Yuk Kei Wan, Christopher Hendra, Ploy N. Pratanwanich, Guillaume Bourque, Pierre‐Étienne Jacques, LeeAnn Ramsay and Engin Cukuroglu. Their work appears in journals such as Bioinformatics, Cell stem cell, Nature Methods, Genome biology and Stem Cells.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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