Jan Zrimec

1.2k citations

27 papers · 681 indexed · 1 hit paper · h-index 11

Co-authors: Aleksej Zelezniak Jens Nielsen Vykintas Jauniškis Filip Buric Sara Jonasson Francisco Zorrilla Martin K. M. Engqvist Sandra Viknander
Topics: Microbial Metabolic Engineering and Bioproduction (4 papers)RNA and protein synthesis mechanisms (4 papers)Genomics and Chromatin Dynamics (4 papers)
Cited by: Pollution Molecular Biology Industrial and Manufacturing Engineering
Journals: Proceedings of the National Academy of Sciences Nature Communications PLANT PHYSIOLOGY
Partner nations: Sweden Slovenia Denmark

In The Last Decade

Jan Zrimec

27 papers receiving 667 citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Expanding functional protein sequence spaces using generative adversarial networks

2021 202 citations Vykintas Jauniškis, Elzbieta Rembeza et al. Nature Machine Intelligence profile →

Peers

Countries citing papers authored by Jan Zrimec

Since Specialization

Citations

This map shows the geographic impact of Jan Zrimec's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Jan Zrimec with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Jan Zrimec more than expected).

Fields of papers citing papers by Jan Zrimec

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Jan Zrimec. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Jan Zrimec. The network helps show where Jan Zrimec may publish in the future.

Co-authorship network of co-authors of Jan Zrimec

This figure shows the co-authorship network connecting the top 25 collaborators of Jan Zrimec. A scholar is included among the top collaborators of Jan Zrimec based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Jan Zrimec. Jan Zrimec is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

#	Work	Indexed citations
1	Evaluating plant growth–defense trade-offs by modeling the interaction between primary and secondary metabolism 2025 ·Proceedings of the National Academy of Sciences ·Jan Zrimec,(unknown),(unknown),Marko Petek,(unknown),Katja Stare,(unknown),Sophia Sonnewald,Kristina Gruden,Zoran Nikoloski	1
2	Amino acid sequence encodes protein abundance shaped by protein stability at reduced synthesis cost 2024 ·Protein Science ·Filip Buric,Sandra Viknander,Xiaozhi Fu,Oliver Lemke,(unknown),Jan Zrimec,Łukasz Szyrwiel,Michael Mülleder,Markus Ralser,Aleksej Zelezniak	1
3	The amino acid sequence determines protein abundance through its conformational stability and reduced synthesis cost 2023 ·Zenodo (CERN European Organization for Nuclear Research) ·Filip Buric,Sandra Viknander,Xiaozhi Fu,Oliver Lemke,Jan Zrimec,Łukasz Szyrwiel,(unknown),Markus Ralser,Aleksej Zelezniak	1
4	Toward learning the principles of plant gene regulation 2022 ·Trends in Plant Science ·Jan Zrimec,Aleksej Zelezniak,Kristina Gruden	6
5	Controlling gene expression with deep generative design of regulatory DNA 2022 ·Zenodo (CERN European Organization for Nuclear Research) ·Jan Zrimec,Aleksej Zelezniak	5
6	A mini-TGA protein modulates gene expression through heterogeneous association with transcription factors 2022 ·PLANT PHYSIOLOGY ·(unknown),Marko Petek,Tjaša Lukan,(unknown),Katja Stare,Érica T. Prates,Daniel Jacobson,Jan Zrimec,(unknown),Matej Butala,Marus̆a Pompe‐Novak,Quentin M. Dudley,Nicola J. Patron,Ajda Taler‐Verčič,Aleksandra Usenik,Vito Türk,Salomé Prat,Anna Coll,Kristina Gruden	7
7	Controlling gene expression with deep generative design of regulatory DNA 2022 ·Nature Communications ·Jan Zrimec,Xiaozhi Fu,Azam Sheikh Muhammad,(unknown),Vykintas Jauniškis,Nora K. Speicher,(unknown),Vilhelm Verendel,Morteza Haghir Chehreghani,Devdatt Dubhashi,Verena Siewers,Florian David,Jens Nielsen,Aleksej Zelezniak	57
8	Learning deep representations of enzyme thermal adaptation 2022 ·Protein Science ·Gang Li,Filip Buric,Jan Zrimec,Sandra Viknander,Jens Nielsen,Aleksej Zelezniak,Martin K. M. Engqvist	20
9	Expanding functional protein sequence spaces using generative adversarial networksbreakdown → 2021 ·Nature Machine Intelligence ·(unknown),Vykintas Jauniškis,(unknown),Elzbieta Rembeza,(unknown),Jan Zrimec,Simona Povilonienė,Audrius Laurynėnas,Sandra Viknander,(unknown),Otto Savolainen,Rolandas Meškys,Martin K. M. Engqvist,Aleksej Zelezniak	202
10	Bayesian genome scale modelling identifies thermal determinants of yeast metabolism 2021 ·Nature Communications ·Gang Li,Yating Hu,Jan Zrimec,Hao Luo,Hao Wang,Aleksej Zelezniak,Boyang Ji,Jens Nielsen	31
11	Plastic-degrading potential across the global microbiome correlates with recent pollution trends 2021 ·Zenodo (CERN European Organization for Nuclear Research) ·Jan Zrimec,Aleksej Zelezniak	1
12	Plastic-Degrading Potential across the Global Microbiome Correlates with Recent Pollution Trends 2021 ·mBio ·Jan Zrimec,(unknown),Sara Jonasson,Francisco Zorrilla,Aleksej Zelezniak	83
13	Learning the Regulatory Code of Gene Expression 2021 ·Frontiers in Molecular Biosciences ·Jan Zrimec,Filip Buric,(unknown),Víctor García,Aleksej Zelezniak	22
14	Parallel Factor Analysis Enables Quantification and Identification of Highly Convolved Data-Independent-Acquired Protein Spectra 2020 ·Patterns ·Filip Buric,Jan Zrimec,Aleksej Zelezniak	2
15	Deep learning suggests that gene expression is encoded in all parts of a co-evolving interacting gene regulatory structure 2020 ·Nature Communications ·Jan Zrimec,(unknown),Filip Buric,Azam Sheikh Muhammad,(unknown),Verena Siewers,Vilhelm Verendel,Jens Nielsen,Mats Töpel,Aleksej Zelezniak	111
16	Multiple plasmid origin‐of‐transfer regions might aid the spread of antimicrobial resistance to human pathogens 2020 ·MicrobiologyOpen ·Jan Zrimec	7
17	Determining the Virulence Properties of Escherichia coli ST131 Containing Bacteriocin-Encoding Plasmids Using Short- and Long-Read Sequencing and Comparing Them with Those of Other E. coli Lineages 2019 ·Microorganisms ·(unknown),(unknown),(unknown),Jan Maarten van Dijl,Natacha Couto,Jan Zrimec,Jerome R. Lo Ten Foe,Ana Cláudia P. Rosa,(unknown),Alex W. Friedrich,(unknown),John W. A. Rossen	6
18	Natural Microbial Communities Can Be Manipulated by Artificially Constructed Biofilms 2019 ·Advanced Science ·Tomaž Rijavec,Jan Zrimec,Rob J. M. van Spanning,Aleš Lapanje	19
19	DNA structure at the plasmid origin-of-transfer indicates its potential transfer range 2018 ·Scientific Reports ·Jan Zrimec,Aleš Lapanje	15
20	Development of Highly Sensitive, Automatized and Portable Whole-Cell Hg Biosensor Based on Environmentally Relevant Microorganisms 2016 ·Geomicrobiology Journal ·Tomaž Rijavec,Jan Zrimec,(unknown),Manca Kovač Viršek,(unknown),Zdravko Podlesek,Cene Gostinčar,(unknown),Marko Virta,Janja Snoj Tratnik,Milena Horvat,Aleš Lapanje	11

About Jan Zrimec

Jan Zrimec is a scholar working on Molecular Medicine, Molecular Biology and Pollution, having authored 27 papers that have together received 681 indexed citations. Recurring topics across this work include Microbial Metabolic Engineering and Bioproduction (4 papers), RNA and protein synthesis mechanisms (4 papers) and Genomics and Chromatin Dynamics (4 papers). The work is most often cited by research in Pollution (87 citations), Molecular Biology (488 citations) and Industrial and Manufacturing Engineering (36 citations). Jan Zrimec has collaborated with scholars based in Sweden, Slovenia and Denmark. Frequent co-authors include Aleksej Zelezniak, Jens Nielsen, Vykintas Jauniškis, Filip Buric, Sara Jonasson, Francisco Zorrilla, Martin K. M. Engqvist, Sandra Viknander, Aleš Lapanje and Vilhelm Verendel. Their work appears in journals such as Proceedings of the National Academy of Sciences, Nature Communications and PLANT PHYSIOLOGY.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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