Jan Funke

3.4k citations

29 papers · 757 indexed · h-index 13

Impact in

Structural Biology top 1%
- Advanced Electron Microscopy Techniques and Applications
Biophysics top 1%
- Cell Image Analysis Techniques
- Advanced Fluorescence Microscopy Techniques

Papers in ⓘ

Structural Biology 7
- Advanced Electron Microscopy Techniques and Applications 7
Biophysics 9
- Cell Image Analysis Techniques 9

Co-authors: Stephan Saalfeld (6 shared papers)Wei-Chung Allen Lee (5 shared papers)Tri Nguyen (6 shared papers)Arlo Sheridan (5 shared papers)Srinivas C. Turaga (5 shared papers)Logan A. Thomas (3 shared papers)Anthony W. Azevedo (2 shared papers)Chandan Singh (2 shared papers)
Journals: Nature (3 papers)Nature Methods (2 papers)iScience (1 paper)Current Biology (1 paper)Human Molecular Genetics (1 paper)
Partner nations: United States Switzerland Germany

In The Last Decade

Jan Funke

27 papers receiving 748 citations

Peers

Countries citing papers authored by Jan Funke

Since Specialization

Citations

This map shows the geographic impact of Jan Funke's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Jan Funke with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Jan Funke more than expected).

Fields of papers citing papers by Jan Funke

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Jan Funke. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Jan Funke. The network helps show where Jan Funke may publish in the future.

Co-authors

The 25 scholars most cited alongside Jan Funke, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Jan Funke Line = papers co-authored together Jan Funke links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

Showing the 20 most-cited of 29 papers — load more, or switch the sort, to bring in the rest.

#	Work
1	Whole-cell organelle segmentation in volume electron microscopy Nature ·Larissa Heinrich, Davis Bennett, David Ackerman, Grace Park, John Bogovic, Nils Eckstein, Alyson Petruncio, Jody Clements, Song Pang, C. Shan Xu, Jan Funke, Wyatt Korff, Harald F. Hess, Jennifer Lippincott‐Schwartz, Stephan Saalfeld, Aubrey V. Weigel, (unknown), Riasat Ali, Rebecca Arruda, Rohit Bahtra, Destiny Nguyen	2021	157
2	Reconstruction of motor control circuits in adult Drosophila using automated transmission electron microscopy Cell ·Jasper S. Phelps, David G. C. Hildebrand, Brett J. Graham, Aaron T. Kuan, Logan A. Thomas, Tri Nguyen, Julia Buhmann, Anthony W. Azevedo, Anne Sustar, Sweta Agrawal, Ming-Guan Liu, Brendan L. Shanny, Jan Funke, John C Tuthill, Wei-Chung Allen Lee	2021	117
3	Large Scale Image Segmentation with Structured Loss Based Deep Learning for Connectome Reconstruction IEEE Transactions on Pattern Analysis and Machine Intelligence ·Jan Funke, Fabian Tschopp, William Grisaitis, Arlo Sheridan, Chandan Singh, Stephan Saalfeld, Srinivas C. Turaga	2018	96
4	Dense neuronal reconstruction through X-ray holographic nano-tomography Nature Neuroscience ·Aaron T. Kuan, Jasper S. Phelps, Logan A. Thomas, Tri Nguyen, Julie Han, Chiao‐Lin Chen, Anthony W. Azevedo, John C Tuthill, Jan Funke, Peter Cloetens, Alexandra Pacureanu, Wei-Chung Allen Lee	2020	88
5	Automatic detection of synaptic partners in a whole-brain Drosophila electron microscopy data set Nature Methods ·Julia Buhmann, Arlo Sheridan, Caroline Malin-Mayor, Philipp Schlegel, Stephan Gerhard, Tom Kazimiers, Renate Krause, Tri Nguyen, Larissa Heinrich, Wei-Chung Allen Lee, Rachel I. Wilson, Stephan Saalfeld, Gregory S.X.E. Jefferis, Davi D. Bock, Srinivas C. Turaga, Matthew Cook, Jan Funke	2021	75
6	Network statistics of the whole-brain connectome of Drosophila Nature ·Albert Lin, Runzhe Yang, Sven Dorkenwald, Arie Matsliah, Amy Sterling, Philipp Schlegel, Szi-chieh Yu, Claire McKellar, Marta Costa, Katharina Eichler, Alexander Shakeel Bates, Nils Eckstein, Jan Funke, Gregory S.X.E. Jefferis, Mala Murthy	2024	35
7	Structured cerebellar connectivity supports resilient pattern separation Nature ·Tri Nguyen, Logan A. Thomas, Jeff L. Rhoades, Ilaria Ricchi, Xintong Cindy Yuan, Arlo Sheridan, David G. C. Hildebrand, Jan Funke, Wade G. Regehr, Wei-Chung Allen Lee	2022	24
8	High Cervical Spinal Cord Stimulation (CSCS) Increases Regional Cerebral Blood Flow After Induced Subarachnoid Haemorrhage in Rats min - Minimally Invasive Neurosurgery ·Heinrich Ebel, Klaus Schomäcker, Attila Balogh, Monica Volz, Jan Funke, H Schicha, Nicholas R. Klug	2001	22
9	Hierarchical architecture of dopaminergic circuits enables second-order conditioning in Drosophila eLife ·Daichi Yamada, Daniel Bushey, Feng Li, Karen L Hibbard, Megan Sammons, Jan Funke, Ashok Litwin-Kumar, Toshihide Hige, Yoshinori Aso	2023	18
10	Local shape descriptors for neuron segmentation Nature Methods ·Arlo Sheridan, Tri Nguyen, Diptodip Deb, Wei-Chung Allen Lee, Stephan Saalfeld, Srinivas C. Turaga, Uri Manor, Jan Funke	2022	17
11	Automated reconstruction of whole-embryo cell lineages by learning from sparse annotations Nature Biotechnology ·Caroline Malin-Mayor, P. B. Hirsch, Léo Guignard, Katie McDole, Yinan Wan, William C. Lemon, Dagmar Kainmueller, Philipp Keller, Stephan Preibisch, Jan Funke	2022	16
12	Transverse endoplasmic reticulum expansion in hereditary spastic paraplegia corticospinal axons Human Molecular Genetics ·Peng‐Peng Zhu, Hui-Fang Hung, Natalia A. Batchenkova, Jonathon Nixon‐Abell, James Henderson, Pengli Zheng, Benoît Renvoisé, Song Pang, C. Shan Xu, Stephan Saalfeld, Jan Funke, Yuxiang Xie, Fabian Svara, Harald F. Hess, Craig Blackstone	2022	16
13	Neural network organization for courtship-song feature detection in Drosophila Current Biology ·Christa A. Baker, Claire McKellar, Rich Pang, Aljoscha Nern, Sven Dorkenwald, Diego A. Pacheco, Nils Eckstein, Jan Funke, Barry J. Dickson, Mala Murthy	2022	14
14	Segmented anisotropic ssTEM dataset of neural tissue Figshare ·Gerhard Stephan, Jan Funke, Martel Julien, C Ludolph Albert, F. Richard	2013	11
15	A Deep Structured Learning Approach Towards Automating Connectome Reconstruction from 3D Electron Micrographs. arXiv (Cornell University) ·Jan Funke, Fabian Tschopp, William Grisaitis, Arlo Sheridan, Chandan Singh, Stephan Saalfeld, Srinivas C. Turaga	2017	10
16	Analyzing Image Segmentation for Connectomics Frontiers in Neural Circuits ·Stephen M. Plaza, Jan Funke	2018	9
17	A Framework For Evaluating Visual SLAM Jan Funke, Tobias Pietzsch	2009	9
18	Candidate Sampling for Neuron Reconstruction from Anisotropic Electron Microscopy Volumes Lecture notes in computer science ·Jan Funke, Julien Martel, Stephan Gerhard, Bjoern Andres, Dan Cireşan, Alessandro Giusti, Luca Maria Gambardella, Jürgen Schmidhuber, Hanspeter Pfister, Albert Cardona, Matthew Cook	2014	9
19	TED: A Tolerant Edit Distance for segmentation evaluation Methods ·Jan Funke, Jonas Klein, Francesc Moreno-Noguer, Albert Cardona, Matthew Cook	2017	4
20	Neural-circuit basis of song preference learning in fruit flies iScience ·Keisuke Imoto, Yuki Ishikawa, Yoshinori Aso, Jan Funke, Ryoya Tanaka, Azusa Kamikouchi	2024	2

About Jan Funke

Jan Funke is a scholar working on Structural Biology, Biophysics, Developmental Biology, Surfaces, Coatings and Films and Neurology, having authored 29 papers that have together received 757 indexed citations. Recurring topics across this work include Cell Image Analysis Techniques (9 papers), Advanced Electron Microscopy Techniques and Applications (7 papers), Neurobiology and Insect Physiology Research (5 papers), Animal Behavior and Reproduction (4 papers), Electron and X-Ray Spectroscopy Techniques (3 papers), Domain Adaptation and Few-Shot Learning (3 papers), Single-cell and spatial transcriptomics (2 papers) and Advanced X-ray Imaging Techniques (2 papers). The work is most often cited by research in Structural Biology (153 citations), Biophysics (219 citations), Cellular and Molecular Neuroscience (214 citations), Aging (16 citations) and Surfaces, Coatings and Films (55 citations). Jan Funke has collaborated with scholars based in United States, Switzerland and Germany. Frequent co-authors include Stephan Saalfeld, Wei-Chung Allen Lee, Tri Nguyen, Arlo Sheridan, Srinivas C. Turaga, Logan A. Thomas, Anthony W. Azevedo, Chandan Singh, Jasper S. Phelps and John C Tuthill. Their work appears in journals such as Nature, Nature Methods, iScience, Current Biology and Human Molecular Genetics.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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