Ilya M. Flyamer

4.0k total citations · 3 hit papers
31 papers, 2.2k citations indexed

About

Ilya M. Flyamer is a scholar working on Molecular Biology, Plant Science and Genetics. According to data from OpenAlex, Ilya M. Flyamer has authored 31 papers receiving a total of 2.2k indexed citations (citations by other indexed papers that have themselves been cited), including 28 papers in Molecular Biology, 13 papers in Plant Science and 4 papers in Genetics. Recurrent topics in Ilya M. Flyamer's work include Genomics and Chromatin Dynamics (25 papers), RNA Research and Splicing (13 papers) and Chromosomal and Genetic Variations (12 papers). Ilya M. Flyamer is often cited by papers focused on Genomics and Chromatin Dynamics (25 papers), RNA Research and Splicing (13 papers) and Chromosomal and Genetic Variations (12 papers). Ilya M. Flyamer collaborates with scholars based in United Kingdom, United States and Russia. Ilya M. Flyamer's co-authors include Wendy A. Bickmore, Maxim Imakaev, Sergey V. Razin, Sergey V. Ulianov, Johanna Gassler, Leonid A. Mirny, Hugo B. Brandão, Nezar Abdennur, Kikuë Tachibana-Konwalski and Robert S. Illingworth and has published in prestigious journals such as Nature, Nature Communications and Nature Genetics.

In The Last Decade

Ilya M. Flyamer

31 papers receiving 2.2k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Single-nucleus Hi-C reveals unique chromatin reorganization at oocyte-to-zygote transition

2017 538 citations Ilya M. Flyamer, Johanna Gassler et al. Nature profile →
Cooltools: Enabling high-resolution Hi-C analysis in Python

2024 86 citations Nezar Abdennur, Sameer Abraham et al. PLoS Computational Biology profile →
Pairtools: From sequencing data to chromosome contacts

2024 58 citations Nezar Abdennur, Geoffrey Fudenberg et al. PLoS Computational Biology profile →

Peers

Ilya M. Flyamer

GENET

Sergey V. Ulianov Russia

M. Jordan Rowley United States

Katherine M. Munson United States

Orsolya Symmons Germany

Qian Bian China

Charles Girardot Germany

Raluca Gordân United States

Tsung-Han S. Hsieh United States

Erica Larschan United States

Alexey A. Gavrilov Russia

Sergey V. Ulianov Russia

Ilya M. Flyamer

1.5k ×0.8

459 ×0.7

201 ×0.8

GENET

95 ×0.9

71 ×1.2

Citations per year, relative to Ilya M. Flyamer Ilya M. Flyamer (= 1×) peers Sergey V. Ulianov

Countries citing papers authored by Ilya M. Flyamer

Since Specialization

Citations

This map shows the geographic impact of Ilya M. Flyamer's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Ilya M. Flyamer with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Ilya M. Flyamer more than expected).

Fields of papers citing papers by Ilya M. Flyamer

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Ilya M. Flyamer. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Ilya M. Flyamer. The network helps show where Ilya M. Flyamer may publish in the future.

Co-authorship network of co-authors of Ilya M. Flyamer

This figure shows the co-authorship network connecting the top 25 collaborators of Ilya M. Flyamer. A scholar is included among the top collaborators of Ilya M. Flyamer based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Ilya M. Flyamer. Ilya M. Flyamer is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Abdennur, Nezar, Sameer Abraham, Geoffrey Fudenberg, et al.. (2024). Cooltools: Enabling high-resolution Hi-C analysis in Python. PLoS Computational Biology. 20(5). e1012067–e1012067. 86 indexed citations breakdown →

Flyamer, Ilya M., et al.. (2024). Transcription decouples estrogen-dependent changes in enhancer-promoter contact frequencies and spatial proximity. PLoS Genetics. 20(5). e1011277–e1011277. 16 indexed citations

Iurlaro, Mario, Ilya M. Flyamer, C Wirbelauer, et al.. (2024). Systematic assessment of ISWI subunits shows that NURF creates local accessibility for CTCF. Nature Genetics. 56(6). 1203–1212. 13 indexed citations

Ing‐Simmons, Elizabeth, Ilya M. Flyamer, Heathcliff Dorado García, et al.. (2023). Doxorubicin Changes the Spatial Organization of the Genome around Active Promoters. Cells. 12(15). 2001–2001. 7 indexed citations

Flyamer, Ilya M., et al.. (2023). Trisomies Reorganize Human 3D Genome. International Journal of Molecular Sciences. 24(22). 16044–16044. 2 indexed citations

Scherr, Matthias J, Hugo B. Brandão, Johanna Gassler, et al.. (2022). MCM complexes are barriers that restrict cohesin-mediated loop extrusion. Nature. 606(7912). 197–203. 86 indexed citations

Gnan, Stefano, Ilya M. Flyamer, Kyle N. Klein, et al.. (2021). Nuclear organisation and replication timing are coupled through RIF1–PP1 interaction. Nature Communications. 12(1). 2910–2910. 32 indexed citations

Flyamer, Ilya M., et al.. (2021). From bedside to bench: regulation of host factors in SARS-CoV-2 infection. Experimental & Molecular Medicine. 53(4). 483–494. 4 indexed citations

Flyamer, Ilya M., Robert S. Illingworth, & Wendy A. Bickmore. (2020). Coolpup.py: versatile pile-up analysis of Hi-C data. Bioinformatics. 36(10). 2980–2985. 118 indexed citations

10.

Boyle, Shelagh, Ilya M. Flyamer, Iain Williamson, et al.. (2020). A central role for canonical PRC1 in shaping the 3D nuclear landscape. Genes & Development. 34(13-14). 931–949. 93 indexed citations

11.

Mjoseng, Heidi K., et al.. (2020). Bivalent promoter hypermethylation in cancer is linked to the H327me3/H3K4me3 ratio in embryonic stem cells. BMC Biology. 18(1). 25–25. 35 indexed citations

12.

Funikov, S. Yu., Michail S. Kukharsky, A. A. Ustyugov, et al.. (2020). Low Level of Expression of C-Terminally Truncated Human FUS Causes Extensive Changes in the Spinal Cord Transcriptome of Asymptomatic Transgenic Mice. Neurochemical Research. 45(5). 1168–1179. 4 indexed citations

13.

Williamson, Iain, Lauren Kane, Paul S. Devenney, et al.. (2019). Developmentally regulated Shh expression is robust to TAD perturbations. Development. 146(19). 98 indexed citations

14.

Flyamer, Ilya M., John P. Thomson, Heidi K. Mjoseng, et al.. (2019). DNA Methylation Directs Polycomb-Dependent 3D Genome Re-organization in Naive Pluripotency. Cell Reports. 29(7). 1974–1985.e6. 62 indexed citations

15.

Golov, Arkadiy K., Sergey V. Ulianov, Artem V. Luzhin, et al.. (2019). C-TALE, a new cost-effective method for targeted enrichment of Hi-C/3C-seq libraries. Methods. 170. 48–60. 17 indexed citations

16.

Ulianov, Sergey V., Ekaterina E. Khrameeva, Pavel Kos, et al.. (2019). Nuclear lamina integrity is required for proper spatial organization of chromatin in Drosophila. Nature Communications. 10(1). 1176–1176. 196 indexed citations

17.

Brandão, Hugo B., Johanna Gassler, Maxim Imakaev, et al.. (2018). A Mechanism of Cohesin-Dependent Loop Extrusion Organizes Mammalian Chromatin Structure in the Developing Embryo. Biophysical Journal. 114(3). 255a–255a. 2 indexed citations

18.

Gassler, Johanna, Ilya M. Flyamer, & Kikuë Tachibana. (2018). Single-nucleus Hi-C of mammalian oocytes and zygotes. Methods in cell biology. 144. 389–407. 7 indexed citations

19.

Gassler, Johanna, Hugo B. Brandão, Maxim Imakaev, et al.. (2017). A mechanism of cohesin‐dependent loop extrusion organizes zygotic genome architecture. The EMBO Journal. 36(24). 3600–3618. 268 indexed citations

20.

Ulianov, Sergey V., Aleksandra A. Galitsyna, Ilya M. Flyamer, et al.. (2017). Activation of the alpha-globin gene expression correlates with dramatic upregulation of nearby non-globin genes and changes in local and large-scale chromatin spatial structure. Epigenetics & Chromatin. 10(1). 35–35. 16 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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