Harun Mustafa

1.4k total citations
14 papers, 130 citations indexed

About

Harun Mustafa is a scholar working on Molecular Biology, Artificial Intelligence and Ecology. According to data from OpenAlex, Harun Mustafa has authored 14 papers receiving a total of 130 indexed citations (citations by other indexed papers that have themselves been cited), including 14 papers in Molecular Biology, 7 papers in Artificial Intelligence and 4 papers in Ecology. Recurrent topics in Harun Mustafa's work include Genomics and Phylogenetic Studies (13 papers), Algorithms and Data Compression (7 papers) and Gene expression and cancer classification (6 papers). Harun Mustafa is often cited by papers focused on Genomics and Phylogenetic Studies (13 papers), Algorithms and Data Compression (7 papers) and Gene expression and cancer classification (6 papers). Harun Mustafa collaborates with scholars based in Switzerland, Canada and Thailand. Harun Mustafa's co-authors include Gunnar Rätsch, André Kahles, Mikhail Karasikov, Michael Brudno, Matei David, Nika Mansouri Ghiasi, Mohammed Alser, Can Fırtına, Sonja Billerbeck and Rachata Ausavarungnirun and has published in prestigious journals such as Nature, Nucleic Acids Research and Bioinformatics.

In The Last Decade

Harun Mustafa

12 papers receiving 125 citations

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Harun Mustafa Switzerland	6	82	45	30	26	15	14	130
Amin Allam Saudi Arabia	4	58 0.7×	58 1.3×	13 0.4×	17 0.7×	12 0.8×	5	131
Lars Wienbrandt Germany	9	101 1.2×	47 1.0×	18 0.6×	17 0.7×	16 1.1×	18	188
Marius Nicolae United States	6	203 2.5×	89 2.0×	28 0.9×	11 0.4×	8 0.5×	10	238
Fatemeh Almodaresi United States	7	201 2.5×	69 1.5×	16 0.5×	32 1.2×	4 0.3×	11	246
Marek Błażewicz Poland	6	196 2.4×	19 0.4×	33 1.1×	7 0.3×	28 1.9×	12	245
Chirag Jain United States	8	163 2.0×	53 1.2×	27 0.9×	42 1.6×	3 0.2×	18	226
Gabe Rudy United States	5	68 0.8×	13 0.3×	29 1.0×	8 0.3×	37 2.5×	6	147
Fabio Cunial Finland	5	75 0.9×	75 1.7×	8 0.3×	7 0.3×	16 1.1×	17	105
Nicola Prezza Italy	8	79 1.0×	110 2.4×	8 0.3×	11 0.4×	24 1.6×	24	165
Timo Beller Germany	4	53 0.6×	37 0.8×	6 0.2×	19 0.7×	11 0.7×	7	70

Countries citing papers authored by Harun Mustafa

Since Specialization

Citations

This map shows the geographic impact of Harun Mustafa's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Harun Mustafa with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Harun Mustafa more than expected).

Fields of papers citing papers by Harun Mustafa

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Harun Mustafa. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Harun Mustafa. The network helps show where Harun Mustafa may publish in the future.

Co-authorship network of co-authors of Harun Mustafa

This figure shows the co-authorship network connecting the top 25 collaborators of Harun Mustafa. A scholar is included among the top collaborators of Harun Mustafa based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Harun Mustafa. Harun Mustafa is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

Sort: Min cites: Since: Top N: Style:

14 of 14 papers shown

Karasikov, Mikhail, et al.. (2025). Efficient and accurate search in petabase-scale sequence repositories. Nature. 647(8091). 1036–1044.

Ghiasi, Nika Mansouri, Mohammad Sadrosadati, Harun Mustafa, et al.. (2024). MegIS: High-Performance, Energy-Efficient, and Low-Cost Metagenomic Analysis with In-Storage Processing. 660–677. 4 indexed citations

Mustafa, Harun, Mikhail Karasikov, Nika Mansouri Ghiasi, Gunnar Rätsch, & André Kahles. (2024). Label-guided seed-chain-extend alignment on annotated De Bruijn graphs. Bioinformatics. 40(Supplement_1). i337–i346. 1 indexed citations

Mustafa, Harun, et al.. (2023). Aligning distant sequences to graphs using long seed sketches. Genome Research. 33(7). 1208–1217. 4 indexed citations

Karasikov, Mikhail, Harun Mustafa, Gunnar Rätsch, & André Kahles. (2022). Lossless indexing with counting de Bruijn graphs. Genome Research. 32(9). 1754–1764. 10 indexed citations

Ghiasi, Nika Mansouri, Jisung Park, Harun Mustafa, et al.. (2022). GenStore: a high-performance in-storage processing system for genome sequence analysis. 635–654. 44 indexed citations

Ghiasi, Nika Mansouri, Jisung Park, Harun Mustafa, et al.. (2022). GenStore: In-Storage Filtering of Genomic Data for High-Performance and Energy-Efficient Genome Analysis. 283–287.

Karasikov, Mikhail, et al.. (2021). Topology-based sparsification of graph annotations. Bioinformatics. 37(Supplement_1). i169–i176. 3 indexed citations

Karasikov, Mikhail, et al.. (2019). Sparse Binary Relation Representations for Genome Graph Annotation. Journal of Computational Biology. 27(4). 626–639. 11 indexed citations

10.

Georgiou, Andreas, Vincent Fortuin, Harun Mustafa, & Gunnar Rätsch. (2019). Deep Multiple Instance Learning for Taxonomic Classification of Metagenomic read sets. 1 indexed citations

11.

Mustafa, Harun, et al.. (2018). Dynamic compression schemes for graph coloring. Bioinformatics. 35(3). 407–414. 11 indexed citations

12.

Oesterle, Sabine, et al.. (2017). Sequence-based prediction of permissive stretches for internal protein tagging and knockdown. BMC Biology. 15(1). 100–100. 20 indexed citations

13.

Mustafa, Harun, Matei David, & Michael Brudno. (2014). Assembly and characterization of novelAluinserts detected from next-generation sequencing data. Mobile Genetic Elements. 4(5). 1–7. 4 indexed citations

14.

David, Matei, Harun Mustafa, & Michael Brudno. (2013). Detecting Alu insertions from high-throughput sequencing data. Nucleic Acids Research. 41(17). e169–e169. 17 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

Explore authors with similar magnitude of impact