Halil Kilicoglu

3.2k total citations
90 papers, 1.9k citations indexed

About

Halil Kilicoglu is a scholar working on Molecular Biology, Artificial Intelligence and Statistics, Probability and Uncertainty. According to data from OpenAlex, Halil Kilicoglu has authored 90 papers receiving a total of 1.9k indexed citations (citations by other indexed papers that have themselves been cited), including 75 papers in Molecular Biology, 65 papers in Artificial Intelligence and 13 papers in Statistics, Probability and Uncertainty. Recurrent topics in Halil Kilicoglu's work include Biomedical Text Mining and Ontologies (73 papers), Topic Modeling (47 papers) and Natural Language Processing Techniques (24 papers). Halil Kilicoglu is often cited by papers focused on Biomedical Text Mining and Ontologies (73 papers), Topic Modeling (47 papers) and Natural Language Processing Techniques (24 papers). Halil Kilicoglu collaborates with scholars based in United States, Canada and Netherlands. Halil Kilicoglu's co-authors include Thomas C. Rindflesch, Marcelo Fiszman, Sabine Bergler, Graciela Rosemblat, Dina Demner‐Fushman, Dongwook Shin, Dimitar Hristovski, Rui Zhang, Dongwook Shin and Kirk Roberts and has published in prestigious journals such as SHILAP Revista de lepidopterología, Bioinformatics and PLoS ONE.

In The Last Decade

Halil Kilicoglu

87 papers receiving 1.8k citations

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Halil Kilicoglu United States	23	1.4k	1.3k	263	135	97	90	1.9k
Marcelo Fiszman United States	27	1.9k 1.3×	1.7k 1.4×	316 1.2×	66 0.5×	286 2.9×	72	2.6k
Rezarta Islamaj United States	18	1.4k 1.0×	1.4k 1.1×	91 0.3×	55 0.4×	43 0.4×	43	2.0k
Erik M. van Mulligen Netherlands	29	1.2k 0.9×	986 0.8×	254 1.0×	23 0.2×	166 1.7×	107	1.9k
Thomas C. Rindflesch United States	36	3.4k 2.4×	2.9k 2.3×	488 1.9×	97 0.7×	275 2.8×	127	4.2k
Graciela Rosemblat United States	17	615 0.4×	521 0.4×	151 0.6×	47 0.3×	43 0.4×	34	877
Aurélie Névéol France	19	809 0.6×	944 0.8×	34 0.1×	82 0.6×	79 0.8×	71	1.4k
Robert Leaman United States	25	2.8k 2.0×	2.6k 2.1×	345 1.3×	21 0.2×	59 0.6×	46	3.8k
James G. Mork United States	21	958 0.7×	856 0.7×	52 0.2×	41 0.3×	50 0.5×	49	1.2k
François-Michel Lang United States	6	929 0.7×	917 0.7×	75 0.3×	25 0.2×	99 1.0×	7	1.2k
Alan R. Aronson United States	28	3.8k 2.7×	3.6k 2.8×	240 0.9×	77 0.6×	340 3.5×	96	4.8k

Countries citing papers authored by Halil Kilicoglu

Since Specialization

Citations

This map shows the geographic impact of Halil Kilicoglu's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Halil Kilicoglu with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Halil Kilicoglu more than expected).

Fields of papers citing papers by Halil Kilicoglu

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Halil Kilicoglu. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Halil Kilicoglu. The network helps show where Halil Kilicoglu may publish in the future.

Co-authorship network of co-authors of Halil Kilicoglu

This figure shows the co-authorship network connecting the top 25 collaborators of Halil Kilicoglu. A scholar is included among the top collaborators of Halil Kilicoglu based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Halil Kilicoglu. Halil Kilicoglu is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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20 of 20 papers shown

Kilicoglu, Halil, et al.. (2025). DiMB-RE: mining the scientific literature for diet-microbiome associations. Journal of the American Medical Informatics Association. 32(6). 998–1006.

Kilicoglu, Halil, et al.. (2024). Integrating deep learning architectures for enhanced biomedical relation extraction: a pipeline approach. Database. 2024. 1 indexed citations

Jiang, Lan, et al.. (2024). Text classification models for assessing the completeness of randomized controlled trial publications based on CONSORT reporting guidelines. Scientific Reports. 14(1). 21721–21721. 6 indexed citations

Kilicoglu, Halil, et al.. (2024). UIUC_BioNLP at BioLaySumm: An Extract-then-Summarize Approach Augmented with Wikipedia Knowledge for Biomedical Lay Summarization. 132–143. 1 indexed citations

Callahan, Tiffany J., Mary F. Paine, Sandra L. Kane‐Gill, et al.. (2023). Developing a Knowledge Graph for Pharmacokinetic Natural Product-Drug Interactions. Journal of Biomedical Informatics. 140. 104341–104341. 8 indexed citations

Wang, Shuang, Halil Kilicoglu, & Jian Du. (2023). A comment-driven evidence appraisal approach to promoting research findings into practice when only uncertain evidence is available. Health Research Policy and Systems. 21(1). 25–25. 1 indexed citations

Jiang, Lan, et al.. (2022). Investigating the impact of weakly supervised data on text mining models of publication transparency: a case study on randomized controlled trials.. PubMed. 2022. 254–263. 5 indexed citations

Kilicoglu, Halil, et al.. (2020). Identifying Sample Size Characteristics in Randomized Controlled Trial Publications.. AMIA. 1 indexed citations

Kilicoglu, Halil, et al.. (2019). Impact of peer review on discussion of study limitations and strength of claims in randomized trial reports: a before and after study. SHILAP Revista de lepidopterología. 4(1). 19–19. 6 indexed citations

10.

Rosemblat, Graciela, Marcelo Fiszman, Dongwook Shin, & Halil Kilicoglu. (2019). Towards a characterization of apparent contradictions in the biomedical literature using context analysis. Journal of Biomedical Informatics. 98. 103275–103275. 16 indexed citations

11.

Rosemblat, Graciela, Dongwook Shin, & Halil Kilicoglu. (2018). Enhancing Identification of Relation Arguments in SemRep.. AMIA. 1 indexed citations

12.

Wang, Liqin, et al.. (2018). Expanding vocabularies for complementary and alternative medicine therapies. International Journal of Medical Informatics. 121. 64–74. 1 indexed citations

13.

Roberts, Kirk, Sonya E. Shooshan, Laritza Rodriguez, et al.. (2015). The role of fine-grained annotations in supervised recognition of risk factors for heart disease from EHRs. Journal of Biomedical Informatics. 58. S111–S119. 29 indexed citations

14.

Roberts, Kirk, et al.. (2014). Annotating Question Decomposition on Complex Medical Questions. Language Resources and Evaluation. 2598–2602. 9 indexed citations

15.

Rosemblat, Graciela, Dongwook Shin, Halil Kilicoglu, Charles Sneiderman, & Thomas C. Rindflesch. (2013). A methodology for extending domain coverage in SemRep. Journal of Biomedical Informatics. 46(6). 1099–1107. 8 indexed citations

16.

Kilicoglu, Halil & Sabine Bergler. (2012). Biological event composition. BMC Bioinformatics. 13(S11). S7–S7. 17 indexed citations

17.

Kilicoglu, Halil & Sabine Bergler. (2010). A High-Precision Approach to Detecting Hedges and their Scopes. 70–77. 9 indexed citations

18.

Kilicoglu, Halil & Sabine Bergler. (2008). Recognizing speculative language in biomedical research articles: a linguistically motivated perspective. BMC Bioinformatics. 9(S11). S10–S10. 83 indexed citations

19.

Kilicoglu, Halil, Dina Demner‐Fushman, Thomas C. Rindflesch, Nancy L Wilczynski, & R. Brian Haynes. (2008). Towards Automatic Recognition of Scientifically Rigorous Clinical Research Evidence. Journal of the American Medical Informatics Association. 16(1). 25–31. 81 indexed citations

20.

Humphrey, Susanne M., Willie J. Rogers, Halil Kilicoglu, Dina Demner‐Fushman, & Thomas C. Rindflesch. (2005). Word sense disambiguation by selecting the best semantic type based on Journal Descriptor Indexing: Preliminary experiment. Journal of the American Society for Information Science and Technology. 57(1). 96–113. 63 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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