Dávid Jakubec

529 total citations
14 papers, 267 citations indexed

About

Dávid Jakubec is a scholar working on Molecular Biology, Materials Chemistry and Cellular and Molecular Neuroscience. According to data from OpenAlex, Dávid Jakubec has authored 14 papers receiving a total of 267 indexed citations (citations by other indexed papers that have themselves been cited), including 13 papers in Molecular Biology, 4 papers in Materials Chemistry and 1 paper in Cellular and Molecular Neuroscience. Recurrent topics in Dávid Jakubec's work include Protein Structure and Dynamics (12 papers), DNA and Nucleic Acid Chemistry (5 papers) and RNA and protein synthesis mechanisms (5 papers). Dávid Jakubec is often cited by papers focused on Protein Structure and Dynamics (12 papers), DNA and Nucleic Acid Chemistry (5 papers) and RNA and protein synthesis mechanisms (5 papers). Dávid Jakubec collaborates with scholars based in Czechia, United Kingdom and Portugal. Dávid Jakubec's co-authors include Jiřı́ Vondrášek, Petr Škoda, David Hoksza, Marián Novotný, Radoslav Krivák, Jakub Galgonek, Jiří Vymětal, Pavel Hobza, Roman A. Laskowski and Jiří Hostaš and has published in prestigious journals such as Nucleic Acids Research, Bioinformatics and PLoS ONE.

In The Last Decade

Dávid Jakubec

13 papers receiving 260 citations

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Dávid Jakubec Czechia	9	178	45	44	28	17	14	267
Diego E. B. Gomes Brazil	11	196 1.1×	83 1.8×	66 1.5×	31 1.1×	12 0.7×	23	314
Pedro B. P. S. Reis Portugal	11	203 1.1×	72 1.6×	52 1.2×	32 1.1×	5 0.3×	18	287
Brendan C. Maguire United States	5	248 1.4×	67 1.5×	36 0.8×	14 0.5×	15 0.9×	8	334
Raudah Lazim Singapore	9	275 1.5×	85 1.9×	53 1.2×	12 0.4×	16 0.9×	18	392
Olof Stenström Sweden	8	211 1.2×	29 0.6×	44 1.0×	14 0.5×	16 0.9×	13	288
Stuart Firth‐Clark United Kingdom	9	253 1.4×	139 3.1×	55 1.3×	19 0.7×	26 1.5×	12	361
Ruth Boetzel United Kingdom	11	285 1.6×	34 0.8×	82 1.9×	12 0.4×	14 0.8×	22	431
Sandhya P. Tiwari Japan	7	241 1.4×	27 0.6×	102 2.3×	12 0.4×	29 1.7×	15	334
Juan Pablo Arcon Argentina	10	329 1.8×	106 2.4×	52 1.2×	11 0.4×	24 1.4×	15	407
Ewa I. Chudyk United Kingdom	12	242 1.4×	117 2.6×	54 1.2×	24 0.9×	7 0.4×	13	405

Countries citing papers authored by Dávid Jakubec

Since Specialization

Citations

This map shows the geographic impact of Dávid Jakubec's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Dávid Jakubec with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Dávid Jakubec more than expected).

Fields of papers citing papers by Dávid Jakubec

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Dávid Jakubec. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Dávid Jakubec. The network helps show where Dávid Jakubec may publish in the future.

Co-authorship network of co-authors of Dávid Jakubec

This figure shows the co-authorship network connecting the top 25 collaborators of Dávid Jakubec. A scholar is included among the top collaborators of Dávid Jakubec based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Dávid Jakubec. Dávid Jakubec is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

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14 of 14 papers shown

Jakubec, Dávid, Petr Škoda, Radoslav Krivák, Marián Novotný, & David Hoksza. (2022). PrankWeb 3: accelerated ligand-binding site predictions for experimental and modelled protein structures. Nucleic Acids Research. 50(W1). W593–W597. 112 indexed citations

Vymětal, Jiří, Dávid Jakubec, Jakub Galgonek, & Jiřı́ Vondrášek. (2021). Amino Acid Interactions (INTAA) web server v2.0: a single service for computation of energetics and conservation in biomolecular 3D structures. Nucleic Acids Research. 49(W1). W15–W20. 9 indexed citations

Christianson, John C., et al.. (2021). EMC is required for biogenesis of Xport‐A, an essential chaperone of Rhodopsin‐1 and the TRP channel. EMBO Reports. 23(1). e53210–e53210. 8 indexed citations

Jakubec, Dávid, et al.. (2020). Hydrophobic Amino Acids as Universal Elements of Protein-Induced DNA Structure Deformation. International Journal of Molecular Sciences. 21(11). 3986–3986. 9 indexed citations

Jakubec, Dávid & Jiřı́ Vondrášek. (2020). Efficient Estimation of Absolute Binding Free Energy for a Homeodomain–DNA Complex from Nonequilibrium Pulling Simulations. Journal of Chemical Theory and Computation. 16(4). 2034–2041. 8 indexed citations

Humpolíčková, Jana, et al.. (2020). Membrane Protein Dimerization in Cell-Derived Lipid Membranes Measured by FRET with MC Simulations. Biophysical Journal. 118(8). 1861–1875. 9 indexed citations

Jakubec, Dávid & Jiřı́ Vondrášek. (2019). Can All-Atom Molecular Dynamics Simulations Quantitatively Describe Homeodomain–DNA Binding Equilibria?. Journal of Chemical Theory and Computation. 15(4). 2635–2648. 8 indexed citations

Jakubec, Dávid, et al.. (2018). Widespread evolutionary crosstalk among protein domains in the context of multi-domain proteins. PLoS ONE. 13(8). e0203085–e0203085.

Jakubec, Dávid, Jiřı́ Vondrášek, & ROBERT FINN. (2018). 3DPatch: fast 3D structure visualization with residue conservation. Bioinformatics. 35(2). 332–334. 3 indexed citations

10.

Galgonek, Jakub, Jiří Vymětal, Dávid Jakubec, & Jiřı́ Vondrášek. (2017). Amino Acid Interaction (INTAA) web server. Nucleic Acids Research. 45(W1). W388–W392. 33 indexed citations

11.

Stasyuk, Olga A., Dávid Jakubec, Jiřı́ Vondrášek, & Pavel Hobza. (2016). Noncovalent Interactions in Specific Recognition Motifs of Protein–DNA Complexes. Journal of Chemical Theory and Computation. 13(2). 877–885. 21 indexed citations

12.

Jakubec, Dávid, Roman A. Laskowski, & Jiřı́ Vondrášek. (2016). Sequence-Specific Recognition of DNA by Proteins: Binding Motifs Discovered Using a Novel Statistical/Computational Analysis. PLoS ONE. 11(7). e0158704–e0158704. 12 indexed citations

13.

Hostaš, Jiří, Dávid Jakubec, Roman A. Laskowski, et al.. (2015). Representative Amino Acid Side-Chain Interactions in Protein–DNA Complexes: A Comparison of Highly Accurate Correlated Ab Initio Quantum Mechanical Calculations and Efficient Approaches for Applications to Large Systems. Journal of Chemical Theory and Computation. 11(9). 4086–4092. 22 indexed citations

14.

Jakubec, Dávid, Jiří Hostaš, Roman A. Laskowski, Pavel Hobza, & Jiřı́ Vondrášek. (2015). Large-Scale Quantitative Assessment of Binding Preferences in Protein–Nucleic Acid Complexes. Journal of Chemical Theory and Computation. 11(4). 1939–1948. 13 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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