Daniel‐Adriano Silva

4.6k total citations
32 papers, 1.7k citations indexed

About

Daniel‐Adriano Silva is a scholar working on Molecular Biology, Atomic and Molecular Physics, and Optics and Spectroscopy. According to data from OpenAlex, Daniel‐Adriano Silva has authored 32 papers receiving a total of 1.7k indexed citations (citations by other indexed papers that have themselves been cited), including 27 papers in Molecular Biology, 7 papers in Atomic and Molecular Physics, and Optics and 6 papers in Spectroscopy. Recurrent topics in Daniel‐Adriano Silva's work include Protein Structure and Dynamics (16 papers), RNA and protein synthesis mechanisms (9 papers) and Spectroscopy and Quantum Chemical Studies (7 papers). Daniel‐Adriano Silva is often cited by papers focused on Protein Structure and Dynamics (16 papers), RNA and protein synthesis mechanisms (9 papers) and Spectroscopy and Quantum Chemical Studies (7 papers). Daniel‐Adriano Silva collaborates with scholars based in United States, Hong Kong and Mexico. Daniel‐Adriano Silva's co-authors include Xuhui Huang, Lin‐Tai Da, Gregory R. Bowman, Alejandro Sosa‐Peinado, Luming Meng, Lu Zhang, Jianzhao Liu, Faisal Mahtab, Sijie Chen and Yuning Hong and has published in prestigious journals such as Science, Proceedings of the National Academy of Sciences and Journal of the American Chemical Society.

In The Last Decade

Daniel‐Adriano Silva

31 papers receiving 1.7k citations

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name h Career Trend Papers Cites
Daniel‐Adriano Silva United States 20 1.3k 492 332 174 152 32 1.7k
Chris Neale United States 23 1.5k 1.2× 288 0.6× 203 0.6× 216 1.2× 124 0.8× 43 1.9k
Atsuo Tamura Japan 22 1.3k 1.0× 437 0.9× 210 0.6× 184 1.1× 120 0.8× 65 1.8k
Douglas V. Laurents Spain 29 2.4k 1.9× 783 1.6× 192 0.6× 185 1.1× 155 1.0× 111 3.0k
Arnout P. Kalverda United Kingdom 23 1.6k 1.2× 388 0.8× 196 0.6× 99 0.6× 73 0.5× 54 2.0k
Timothy Sharpe Switzerland 22 1.1k 0.9× 368 0.7× 120 0.4× 96 0.6× 116 0.8× 43 1.4k
Efstratios Mylonas Germany 15 1.9k 1.5× 954 1.9× 330 1.0× 108 0.6× 182 1.2× 24 2.6k
Andreas Vitalis Switzerland 22 2.1k 1.6× 759 1.5× 263 0.8× 160 0.9× 86 0.6× 46 2.4k
Carlos A. Castañeda United States 26 2.1k 1.7× 307 0.6× 205 0.6× 166 1.0× 203 1.3× 70 2.5k
Kendra K. Frederick United States 16 1.2k 1.0× 567 1.2× 555 1.7× 198 1.1× 77 0.5× 32 1.7k
Rajgopal Srinivasan United States 23 1.9k 1.5× 943 1.9× 314 0.9× 119 0.7× 111 0.7× 46 2.3k

Countries citing papers authored by Daniel‐Adriano Silva

Since Specialization
Citations

This map shows the geographic impact of Daniel‐Adriano Silva's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Daniel‐Adriano Silva with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Daniel‐Adriano Silva more than expected).

Fields of papers citing papers by Daniel‐Adriano Silva

Since Specialization
Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Daniel‐Adriano Silva. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Daniel‐Adriano Silva. The network helps show where Daniel‐Adriano Silva may publish in the future.

Co-authorship network of co-authors of Daniel‐Adriano Silva

This figure shows the co-authorship network connecting the top 25 collaborators of Daniel‐Adriano Silva. A scholar is included among the top collaborators of Daniel‐Adriano Silva based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Daniel‐Adriano Silva. Daniel‐Adriano Silva is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

20 of 20 papers shown
1.
Méndez, Yanira, et al.. (2025). A De Novo Luciferase Bioconjugate for the Cas13-Based Detection of Influenza A. JACS Au. 5(8). 3914–3925.
2.
Rebelo, Maria, Cong Tang, Ana R. Coelho, et al.. (2023). De Novo Human Angiotensin-Converting Enzyme 2 Decoy NL-CVX1 Protects Mice From Severe Disease After Severe Acute Respiratory Syndrome Coronavirus 2 Infection. The Journal of Infectious Diseases. 228(6). 723–733. 2 indexed citations
3.
Quijano‐Rubio, Alfredo, Huilin Yang, Isabel Leung, et al.. (2022). A split, conditionally active mimetic of IL-2 reduces the toxicity of systemic cytokine therapy. Nature Biotechnology. 41(4). 532–540. 49 indexed citations
4.
Costas, Miguel, Daniel‐Adriano Silva, S. Shanmugaratnam, et al.. (2021). The Stability Landscape of de novo TIM Barrels Explored by a Modular Design Approach. Journal of Molecular Biology. 433(18). 167153–167153. 18 indexed citations
5.
Quijano‐Rubio, Alfredo, Umut Y. Ulge, Carl Walkey, & Daniel‐Adriano Silva. (2020). The advent of de novo proteins for cancer immunotherapy. Current Opinion in Chemical Biology. 56. 119–128. 19 indexed citations
6.
Marcos, Enrique, Benjamin Basanta, Tamuka M. Chidyausiku, et al.. (2017). Principles for designing proteins with cavities formed by curved β sheets. Science. 355(6321). 201–206. 96 indexed citations
7.
Hosseinzadeh, Parisa, Gaurav Bhardwaj, Vikram Khipple Mulligan, et al.. (2017). Comprehensive computational design of ordered peptide macrocycles. Science. 358(6369). 1461–1466. 156 indexed citations
8.
Da, Lin‐Tai, Fátima Pardo‐Ávila, Liang Xu, et al.. (2016). Bridge helix bending promotes RNA polymerase II backtracking through a critical and conserved threonine residue. Nature Communications. 7(1). 11244–11244. 77 indexed citations
9.
Silva, Daniel‐Adriano, Bruno E. Correia, & Erik Procko. (2016). Motif-Driven Design of Protein–Protein Interfaces. Methods in molecular biology. 1414. 285–304. 35 indexed citations
10.
Berger, S. A., Erik Procko, Daciana Margineantu, et al.. (2016). Computationally designed high specificity inhibitors delineate the roles of BCL2 family proteins in cancer. eLife. 5. 64 indexed citations
11.
Zhang, Lu, Daniel‐Adriano Silva, Fátima Pardo‐Ávila, Dong Wang, & Xuhui Huang. (2015). Structural Model of RNA Polymerase II Elongation Complex with Complete Transcription Bubble Reveals NTP Entry Routes. PLoS Computational Biology. 11(7). e1004354–e1004354. 17 indexed citations
12.
Silva, Daniel‐Adriano, Dahlia R. Weiss, Lin‐Tai Da, et al.. (2014). Millisecond dynamics of RNA polymerase II translocation at atomic resolution. Proceedings of the National Academy of Sciences. 111(21). 7665–7670. 125 indexed citations
13.
Gu, Shuo, et al.. (2014). Quantitatively Characterizing the Ligand Binding Mechanisms of Choline Binding Protein Using Markov State Model Analysis. PLoS Computational Biology. 10(8). e1003767–e1003767. 64 indexed citations
14.
Zhang, Lu, et al.. (2014). Dynamic protein conformations preferentially drive energy transfer along the active chain of the photosystem II reaction centre. Nature Communications. 5(1). 4170–4170. 47 indexed citations
15.
Da, Lin‐Tai, Fu Kit Sheong, Daniel‐Adriano Silva, & Xuhui Huang. (2013). Application of Markov State Models to Simulate Long Timescale Dynamics of Biological Macromolecules. Advances in experimental medicine and biology. 805. 29–66. 29 indexed citations
16.
Zhang, Lu, Daniel‐Adriano Silva, YiJing Yan, & Xuhui Huang. (2012). Force field development for cofactors in the photosystem II. Journal of Computational Chemistry. 33(25). 1969–1980. 59 indexed citations
17.
Silva, Daniel‐Adriano, Lenin Domínguez‐Ramírez, Arturo Rojo-Domı́nguez, & Alejandro Sosa‐Peinado. (2011). Conformational dynamics of L‐lysine, L‐arginine, L‐ornithine binding protein reveals ligand‐dependent plasticity. Proteins Structure Function and Bioinformatics. 79(7). 2097–2108. 15 indexed citations
18.
Silva, Daniel‐Adriano, Gregory R. Bowman, Alejandro Sosa‐Peinado, & Xuhui Huang. (2011). A Role for Both Conformational Selection and Induced Fit in Ligand Binding by the LAO Protein. PLoS Computational Biology. 7(5). e1002054–e1002054. 189 indexed citations
19.
Liu, Xin, David Bushnell, Daniel‐Adriano Silva, Xuhui Huang, & Roger D. Kornberg. (2011). Initiation Complex Structure and Promoter Proofreading. Science. 333(6042). 633–637. 47 indexed citations
20.
Martinez-Becerra, Francisco J., Daniel‐Adriano Silva, Lenin Domínguez‐Ramírez, et al.. (2007). Analysis of the antimicrobial activities of a chemokine-derived peptide (CDAP-4) on Pseudomonas aeruginosa. Biochemical and Biophysical Research Communications. 355(2). 352–358. 10 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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