Daniel E. Deatherage

4.4k citations

28 papers · 2.8k indexed · 1 hit paper · h-index 21

Impact in

Molecular Medicine top 1%
- Antibiotic Resistance in Bacteria
Endocrinology top 2%

Papers in ⓘ

Genetics 13
- Evolution and Genetic Dynamics 9
- Genetic diversity and population structure 3
Molecular Biology 23
- Epigenetics and DNA Methylation 9
- Genomics and Phylogenetic Studies 8
- Cancer-related gene regulation 5
- CRISPR and Genetic Engineering 3
- Histone Deacetylase Inhibitors Research 3

Co-authors: Jeffrey E. Barrick (11 shared papers)Richard E. Lenski (3 shared papers)Tim H-M. Huang (7 shared papers)Olivier Tenaillon (2 shared papers)Dominique Schneider (2 shared papers)Charles C. Traverse (2 shared papers)Claudine Médigue (2 shared papers)Stéphane Cruveiller (2 shared papers)
Journals: Cancer Research (5 papers)Proceedings of the National Academy of Sciences (2 papers)Neoplasia (1 paper)Nature Communications (1 paper)ACS Synthetic Biology (1 paper)
Partner nations: United States Taiwan Hong Kong

In The Last Decade

Daniel E. Deatherage

27 papers receiving 2.8k citations

Hit Papers

align trajectories log scale

Identification of Mutations in Laboratory-Evolved Microbes from Next-Generation Sequencing Data Using breseq 2014 · 1.0k citations

Peers

Countries citing papers authored by Daniel E. Deatherage

Since Specialization

Citations

This map shows the geographic impact of Daniel E. Deatherage's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Daniel E. Deatherage with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Daniel E. Deatherage more than expected).

Fields of papers citing papers by Daniel E. Deatherage

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Daniel E. Deatherage. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Daniel E. Deatherage. The network helps show where Daniel E. Deatherage may publish in the future.

Co-authors

The 25 scholars most cited alongside Daniel E. Deatherage, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Daniel E. Deatherage Line = papers co-authored together Daniel E. Deatherage links everyone, so they are left out of the graph.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

Showing the 20 most-cited of 28 papers — load more, or switch the sort, to bring in the rest.

#	Work
1	Identification of Mutations in Laboratory-Evolved Microbes from Next-Generation Sequencing Data Using breseq Methods in molecular biology ·Daniel E. Deatherage, Jeffrey E. Barrick Hit paper breakdown →	2014	1047
2	Tempo and mode of genome evolution in a 50,000-generation experiment Nature ·Olivier Tenaillon, Jeffrey E. Barrick, Noah Ribeck, Daniel E. Deatherage, Jeffrey L. Blanchard, Aurko Dasgupta, Gabriel C. Wu, Sébastien Wielgoss, Stéphane Cruveiller, Claudine Médigue, Dominique Schneider, Richard E. Lenski	2016	294
3	Epigenetic Repression of microRNA-129-2 Leads to Overexpression of SOX4 Oncogene in Endometrial Cancer Cancer Research ·Yi-Wen Huang, Joseph C. Liu, Daniel E. Deatherage, Jingqin Luo, David G. Mutch, Paul J. Goodfellow, David S. Miller, Tim H-M. Huang	2009	227
4	Identifying structural variation in haploid microbial genomes from short-read resequencing data using breseq BMC Genomics ·Jeffrey E. Barrick, Geoffrey Colburn, Daniel E. Deatherage, Charles C. Traverse, Matthew D Strand, Jordan J Borges, David B. Knoester, Aaron Reba, Austin G. Meyer	2014	189
5	Xenoestrogen-Induced Epigenetic Repression of microRNA-9-3 in Breast Epithelial Cells Cancer Research ·Pei-Yin Hsu, Daniel E. Deatherage, Blanca Rodríguez, Sandya Liyanarachchi, Yu-I Weng, Tao Zuo, Joseph K. Liu, Alfred S.L. Cheng, Tim H-M. Huang	2009	103
6	Large Chromosomal Rearrangements during a Long-Term Evolution Experiment with Escherichia coli mBio ·Colin Raeside, Joël Gaffé, Daniel E. Deatherage, Olivier Tenaillon, Adam Briska, Ryan Ptashkin, Stéphane Cruveiller, Claudine Médigue, Richard E. Lenski, Jeffrey E. Barrick, Dominique Schneider	2014	103
7	Promoter hypermethylation of FBXO32, a novel TGF-β/SMAD4 target gene and tumor suppressor, is associated with poor prognosis in human ovarian cancer Laboratory Investigation ·Jian‐Liang Chou, Her‐Young Su, Lin‐Yu Chen, Yu‐Ping Liao, Corinna Hartman-Frey, Yi-Hui Lai, Hui‐Wen Yang, Daniel E. Deatherage, Chieh‐Ti Kuo, Yi‐Wen Huang, Pearlly S. Yan, Shu‐Huei Hsiao, Chien-Kuo Tai, Huey‐Jen Lin, Ramana V. Davuluri, Tai‐Kuang Chao, Kenneth P. Nephew, Tim H-M. Huang, Hung-Cheng Lai, Michael WY Chan	2010	99
8	Specificity of genome evolution in experimental populations of Escherichia coli evolved at different temperatures Proceedings of the National Academy of Sciences ·Daniel E. Deatherage, J. Kepner, Albert F. Bennett, Richard E. Lenski, Jeffrey E. Barrick	2017	96
9	Epigenetic influences of low-dose bisphenol A in primary human breast epithelial cells Toxicology and Applied Pharmacology ·Yu-I Weng, Pei-Yin Hsu, Sandya Liyanarachchi, Joseph K. Liu, Daniel E. Deatherage, Yi-Wen Huang, Tao Zuo, Blanca Rodríguez, Ching‐Hung Lin, Ann‐Lii Cheng	2010	93
10	Estrogen-mediated epigenetic repression of large chromosomal regions through DNA looping Genome Research ·Pei-Yin Hsu, Hang-Kai Hsu, Gregory A. C. Singer, Pearlly S. Yan, Blanca Rodríguez, Joseph C. Liu, Yu-I Weng, Daniel E. Deatherage, Zhong Chen, Julia S. Pereira, Ricardo López, José Russo, Qianben Wang, Coral A. Lamartiniere, Kenneth P. Nephew, Tim H.‐M. Huang	2010	77
11	Aberrant Transforming Growth Factor β1 Signaling and SMAD4 Nuclear Translocation Confer Epigenetic Repression of ADAM19 in Ovarian Cancer Neoplasia ·Michael W.Y. Chan, Yi‐Wen Huang, Corinna Hartman-Frey, Chieh‐Ti Kuo, Daniel E. Deatherage, Huaxia Qin, Alfred S.L. Cheng, Pearlly S. Yan, Ramana V. Davuluri, Tim H.M. Huang, Kenneth P. Nephew, Huey‐Jen Lin	2008	58
12	Recursive genomewide recombination and sequencing reveals a key refinement step in the evolution of a metabolic innovation in Escherichia coli Proceedings of the National Academy of Sciences ·Erik M. Quandt, Daniel E. Deatherage, Andrew D. Ellington, George Georgiou, Jeffrey E. Barrick	2013	58
13	Breast Cancer–Associated Fibroblasts Confer AKT1-Mediated Epigenetic Silencing of Cystatin M in Epithelial Cells Cancer Research ·Huey‐Jen Lin, Tao Zuo, Ching‐Hung Lin, Chieh Kuo, Sandya Liyanarachchi, Shuying Sun, Rulong Shen, Daniel E. Deatherage, Dustin Potter, Lisa K. Asamoto, Shili Lin, Pearlly S. Yan, Ann‐Lii Cheng, Michael C. Ostrowski, Tim H-M. Huang	2008	55
14	Detecting rare structural variation in evolving microbial populations from new sequence junctions using breseq Frontiers in Genetics ·Daniel E. Deatherage, Charles C. Traverse, Lindsey N. Wolf, Jeffrey E. Barrick	2015	53
15	Epigenetic Silencing Mediated through Activated PI3K/AKT Signaling in Breast Cancer Cancer Research ·Tao Zuo, Ta-Ming Liu, Xun Lan, Yu‐I Weng, Rulong Shen, Fei Gu, Yi‐Wen Huang, Sandya Liyanarachchi, Daniel E. Deatherage, Pei-Yin Hsu, Cenny Taslim, Bhuvaneswari Ramaswamy, Charles L. Shapiro, Huey‐Jen Lin, Alfred S.L. Cheng, Victor X. Jin, Tim H-M. Huang	2011	52
16	Aberrant TGFβ/SMAD4 signaling contributes to epigenetic silencing of a putative tumor suppressor,RunX1T1in ovarian cancer Epigenetics ·Kun-Tu Yeh, Tze-Ho Chen, Hui-Wen Yang, Jian-Liang Chou, Lin Yu Chen, Chia-Ming Yeh, Yu Hsin Chen, Ru-Inn Lin, Her-Young Su, Gary C. W. Chen, Daniel E. Deatherage, Yi-Wen Huang, Pearlly S. Yan, Huey Lin, Kenneth P. Nephew, Tim H-M. Huang, Hung-Cheng Lai, Michael W.Y. Chan	2011	37
17	Control of Lineage-Specific Gene Expression by Functionalized gRNA Barcodes ACS Synthetic Biology ·Aziz Al’Khafaji, Daniel E. Deatherage, Amy Brock	2018	35
18	Directed evolution of Escherichia coli with lower-than-natural plasmid mutation rates Nucleic Acids Research ·Daniel E. Deatherage, Dacia Leon, Álvaro E. Rodriguez, Salma K. Omar, Jeffrey E. Barrick	2018	30
19	Differential Methylation Hybridization: Profiling DNA Methylation with a High-Density CpG Island Microarray Methods in molecular biology ·Pearlly S. Yan, Dustin Potter, Daniel E. Deatherage, Tim H-M Huang, Shili Lin	2008	27
20	Evolution of satellite plasmids can prolong the maintenance of newly acquired accessory genes in bacteria Nature Communications ·Xue Zhang, Daniel E. Deatherage, Hao Zheng, Stratton J. Georgoulis, Jeffrey E. Barrick	2019	25

About Daniel E. Deatherage

Daniel E. Deatherage is a scholar working on Genetics, Molecular Biology, Cancer Research, Molecular Medicine and Health, Toxicology and Mutagenesis, having authored 28 papers that have together received 2.8k indexed citations. Recurring topics across this work include Epigenetics and DNA Methylation (9 papers), Evolution and Genetic Dynamics (9 papers), Genomics and Phylogenetic Studies (8 papers), Cancer-related gene regulation (5 papers), Cancer-related molecular mechanisms research (3 papers), CRISPR and Genetic Engineering (3 papers), Genetic diversity and population structure (3 papers) and Histone Deacetylase Inhibitors Research (3 papers). The work is most often cited by research in Molecular Medicine (322 citations), Endocrinology (207 citations), Genetics (1.1k citations), Molecular Biology (1.9k citations) and Cancer Research (405 citations). Daniel E. Deatherage has collaborated with scholars based in United States, Taiwan and Hong Kong. Frequent co-authors include Jeffrey E. Barrick, Richard E. Lenski, Tim H-M. Huang, Olivier Tenaillon, Dominique Schneider, Charles C. Traverse, Claudine Médigue, Stéphane Cruveiller, Joseph C. Liu and Pearlly S. Yan. Their work appears in journals such as Cancer Research, Proceedings of the National Academy of Sciences, Neoplasia, Nature Communications and ACS Synthetic Biology.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

Explore authors with similar magnitude of impact