Bree Cummins

685 total citations
31 papers, 373 citations indexed

About

Bree Cummins is a scholar working on Molecular Biology, Genetics and Biomedical Engineering. According to data from OpenAlex, Bree Cummins has authored 31 papers receiving a total of 373 indexed citations (citations by other indexed papers that have themselves been cited), including 21 papers in Molecular Biology, 7 papers in Genetics and 3 papers in Biomedical Engineering. Recurrent topics in Bree Cummins's work include Gene Regulatory Network Analysis (20 papers), Bioinformatics and Genomic Networks (14 papers) and Microbial Metabolic Engineering and Bioproduction (10 papers). Bree Cummins is often cited by papers focused on Gene Regulatory Network Analysis (20 papers), Bioinformatics and Genomic Networks (14 papers) and Microbial Metabolic Engineering and Bioproduction (10 papers). Bree Cummins collaborates with scholars based in United States, India and Netherlands. Bree Cummins's co-authors include Tomáš Gedeon, Ricardo Cortez, Konstantin Mischaikow, James M. Hyman, Ivo Foppa, Isaac Klapper, Ying Xin, Steven B. Haase, Karin Leiderman and Francis C. Motta and has published in prestigious journals such as Science, Journal of Computational Physics and Proceedings of the Royal Society B Biological Sciences.

In The Last Decade

Bree Cummins

29 papers receiving 362 citations

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name h Career Trend Papers Cites
Bree Cummins United States 9 141 87 49 37 35 31 373
Syed Shahed Riaz India 11 44 0.3× 105 1.2× 61 1.2× 30 0.8× 20 0.6× 19 370
E. J. Crampin New Zealand 9 217 1.5× 94 1.1× 77 1.6× 115 3.1× 52 1.5× 13 561
Sravanti Uppaluri Switzerland 10 94 0.7× 41 0.5× 25 0.5× 3 0.1× 94 2.7× 10 364
Francis C. Motta United States 9 59 0.4× 35 0.4× 7 0.1× 8 0.2× 10 0.3× 26 223
J. Dockery United States 10 300 2.1× 39 0.4× 120 2.4× 26 0.7× 162 4.6× 13 670
Pushpita Ghosh India 12 139 1.0× 120 1.4× 104 2.1× 29 0.8× 99 2.8× 31 506
Zigen Song China 17 16 0.1× 110 1.3× 68 1.4× 36 1.0× 39 1.1× 43 624
Stefan Reinker Germany 8 377 2.7× 24 0.3× 63 1.3× 27 0.7× 61 1.7× 10 635
Jacob Halatek Germany 12 335 2.4× 16 0.2× 119 2.4× 37 1.0× 63 1.8× 14 605
Kohei Shimizu Japan 11 56 0.4× 18 0.2× 15 0.3× 3 0.1× 14 0.4× 29 381

Countries citing papers authored by Bree Cummins

Since Specialization
Citations

This map shows the geographic impact of Bree Cummins's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Bree Cummins with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Bree Cummins more than expected).

Fields of papers citing papers by Bree Cummins

Since Specialization
Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Bree Cummins. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Bree Cummins. The network helps show where Bree Cummins may publish in the future.

Co-authorship network of co-authors of Bree Cummins

This figure shows the co-authorship network connecting the top 25 collaborators of Bree Cummins. A scholar is included among the top collaborators of Bree Cummins based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Bree Cummins. Bree Cummins is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

20 of 20 papers shown
1.
Cummins, Bree, et al.. (2025). An introduction to collaborative filtering through the lens of the Netflix Prize. Knowledge and Information Systems. 67(4). 3049–3098. 1 indexed citations
2.
Motta, Francis C., et al.. (2024). Generalized measures of population synchrony. Mathematical Biosciences. 380. 109344–109344. 1 indexed citations
3.
Hari, Kishore, et al.. (2024). Multistability and predominant hybrid phenotypes in a four node mutually repressive network of Th1/Th2/Th17/Treg differentiation. npj Systems Biology and Applications. 10(1). 123–123. 4 indexed citations
4.
Cummins, Bree, et al.. (2024). Quantifying robustness of the gap gene network. Journal of Theoretical Biology. 580. 111720–111720. 2 indexed citations
5.
Hari, Kishore, et al.. (2023). Assessing biological network dynamics: comparing numerical simulations with analytical decomposition of parameter space. npj Systems Biology and Applications. 9(1). 29–29. 4 indexed citations
6.
Fox, Julian C., et al.. (2023). A yeast cell cycle pulse generator model shows consistency with multiple oscillatory and checkpoint mutant datasets. Mathematical Biosciences. 367. 109102–109102. 2 indexed citations
7.
Cummins, Bree, Francis C. Motta, Anastasia Deckard, et al.. (2022). Experimental guidance for discovering genetic networks through hypothesis reduction on time series. PLoS Computational Biology. 18(10). e1010145–e1010145. 1 indexed citations
8.
Bryce, Daniel, Robert P. Goldman, Jacob Beal, et al.. (2022). Round Trip: An Automated Pipeline for Experimental Design, Execution, and Analysis. ACS Synthetic Biology. 11(2). 608–622. 6 indexed citations
9.
Cummins, Bree, et al.. (2022). Modeling Transport Regulation in Gene Regulatory Networks. Bulletin of Mathematical Biology. 84(8). 89–89. 3 indexed citations
10.
Motta, Francis C., et al.. (2022). Conservation of dynamic characteristics of transcriptional regulatory elements in periodic biological processes. BMC Bioinformatics. 23(1). 94–94. 2 indexed citations
11.
Cummins, Bree, et al.. (2022). Joint realizability of monotone Boolean functions. Theoretical Computer Science. 922. 447–474. 8 indexed citations
12.
13.
Cummins, Bree, et al.. (2020). Using extremal events to characterize noisy time series. Journal of Mathematical Biology. 80(5). 1523–1557. 5 indexed citations
14.
Xin, Ying, Bree Cummins, & Tomáš Gedeon. (2020). Multistability in the epithelial-mesenchymal transition network. BMC Bioinformatics. 21(1). 71–71. 29 indexed citations
15.
Cummins, Bree, et al.. (2019). Comparison of Combinatorial Signatures of Global Network Dynamics Generated by Two Classes of ODE Models. SIAM Journal on Applied Dynamical Systems. 18(1). 418–457. 5 indexed citations
16.
Cummins, Bree, et al.. (2018). DSGRN: Examining the Dynamics of Families of Logical Models. Frontiers in Physiology. 9. 549–549. 7 indexed citations
17.
Gedeon, Tomáš, et al.. (2018). Identifying robust hysteresis in networks. PLoS Computational Biology. 14(4). e1006121–e1006121. 20 indexed citations
18.
Cummins, Bree, et al.. (2016). Combinatorial Representation of Parameter Space for Switching Networks. SIAM Journal on Applied Dynamical Systems. 15(4). 2176–2212. 30 indexed citations
19.
Cummins, Bree, et al.. (2016). Convergence Properties of Posttranslationally Modified Protein–Protein Switching Networks with Fast Decay Rates. Bulletin of Mathematical Biology. 78(6). 1077–1120. 3 indexed citations
20.
Cummins, Bree, et al.. (2012). A Spatial Model of Mosquito Host-Seeking Behavior. PLoS Computational Biology. 8(5). e1002500–e1002500. 54 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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