Atsuhiro Shimada

1.7k total citations · 1 hit paper
44 papers, 1.2k citations indexed

About

Atsuhiro Shimada is a scholar working on Molecular Biology, Cellular and Molecular Neuroscience and Materials Chemistry. According to data from OpenAlex, Atsuhiro Shimada has authored 44 papers receiving a total of 1.2k indexed citations (citations by other indexed papers that have themselves been cited), including 27 papers in Molecular Biology, 9 papers in Cellular and Molecular Neuroscience and 9 papers in Materials Chemistry. Recurrent topics in Atsuhiro Shimada's work include Photosynthetic Processes and Mechanisms (14 papers), Photoreceptor and optogenetics research (9 papers) and Enzyme Structure and Function (6 papers). Atsuhiro Shimada is often cited by papers focused on Photosynthetic Processes and Mechanisms (14 papers), Photoreceptor and optogenetics research (9 papers) and Enzyme Structure and Function (6 papers). Atsuhiro Shimada collaborates with scholars based in Japan, United States and India. Atsuhiro Shimada's co-authors include Shinya Yoshikawa, Tadashi Maruyama, Tomitake Tsukihara, Kyoko Shinzawa‐Itoh, Eiki Yamashita, Seiki Kuramitsu, Satoru Kanai, Kenji Fukui, Ryoji Masui and Junpei Baba and has published in prestigious journals such as Chemical Reviews, Proceedings of the National Academy of Sciences and Nucleic Acids Research.

In The Last Decade

Atsuhiro Shimada

42 papers receiving 1.2k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Reaction Mechanism of Cytochrome c Oxidase

2015 375 citations Shinya Yoshikawa, Atsuhiro Shimada profile →

Peers

Atsuhiro Shimada

ECOLO

RESE

Amanda A. Brindley United Kingdom

Christopher J. Bender United States

Mari Shibata Japan

Yusuke Tsukatani Japan

Guy T. Hanke United Kingdom

Keisuke Yoshida Japan

Dmitriy Shevela Sweden

Shin‐Ichiro Ozawa Japan

Kei Wada Japan

Jianfeng Yu China

Amanda A. Brindley United Kingdom

Atsuhiro Shimada

1.0k ×1.3

201 ×1.0

141 ×0.8

ECOLO

189 ×1.3

158 ×1.1

RESE

Citations per year, relative to Atsuhiro Shimada Atsuhiro Shimada (= 1×) peers Amanda A. Brindley

Countries citing papers authored by Atsuhiro Shimada

Since Specialization

Citations

This map shows the geographic impact of Atsuhiro Shimada's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Atsuhiro Shimada with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Atsuhiro Shimada more than expected).

Fields of papers citing papers by Atsuhiro Shimada

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Atsuhiro Shimada. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Atsuhiro Shimada. The network helps show where Atsuhiro Shimada may publish in the future.

Co-authorship network of co-authors of Atsuhiro Shimada

This figure shows the co-authorship network connecting the top 25 collaborators of Atsuhiro Shimada. A scholar is included among the top collaborators of Atsuhiro Shimada based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Atsuhiro Shimada. Atsuhiro Shimada is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

Shimada, Atsuhiro, et al.. (2026). The three-dimensional structure of a proton-pumping pathway, the H-pathway, is evolutionarily conserved in all three families of cytochrome c oxidase. Frontiers in Chemistry. 13. 1645343–1645343.

Shimada, Atsuhiro, et al.. (2024). Nowhere to hide: massive corals’ mortality after cumulative heat stress in a putative climate change refugium. Coral Reefs. 44(1). 321–337. 1 indexed citations

Yanagisawa, Sachiko, Atsuhiro Shimada, Siddhesh Aras, et al.. (2024). Resonance Raman spectral analysis of the heme site structure of cytochrome c oxidase with its positive regulator CHCHD2. Journal of Inorganic Biochemistry. 260. 112673–112673. 3 indexed citations

Shimada, Atsuhiro, Tomitake Tsukihara, & Shinya Yoshikawa. (2023). Recent progress in experimental studies on the catalytic mechanism of cytochrome c oxidase. Frontiers in Chemistry. 11. 1108190–1108190. 11 indexed citations

Suzuki, Hiromi, et al.. (2023). Production of recombinant His-tagged triple-FLAG peptide in Brevibacillus choshinensis and its utilization as an easy-to-remove affinity peptide. Bioscience Biotechnology and Biochemistry. 87(9). 1029–1035. 3 indexed citations

Yokoyama, Yuichi, Tohru Terada, Kentaro Shimizu, et al.. (2020). Development of a deep learning-based method to identify “good” regions of a cryo-electron microscopy grid. Biophysical Reviews. 12(2). 349–354. 19 indexed citations

Shimada, Atsuhiro, Kyoko Shinzawa‐Itoh, Takeshi Hiromoto, et al.. (2020). X-ray structures of catalytic intermediates of cytochrome c oxidase provide insights into its O2 activation and unidirectional proton-pump mechanisms. Journal of Biological Chemistry. 295(17). 5818–5833. 22 indexed citations

Baba, Seiki, Atsuhiro Shimada, Nobuhiro Mizuno, et al.. (2019). A temperature-controlled cold-gas humidifier and its application to protein crystals with the humid-air and glue-coating method. Journal of Applied Crystallography. 52(4). 699–705. 9 indexed citations

Suga, Michihiro, Atsuhiro Shimada, Fusamichi Akita, et al.. (2019). Time-resolved studies of metalloproteins using X-ray free electron laser radiation at SACLA. Biochimica et Biophysica Acta (BBA) - General Subjects. 1864(2). 129466–129466. 23 indexed citations

10.

Ueno, Go, Atsuhiro Shimada, Eiki Yamashita, et al.. (2019). Low-dose X-ray structure analysis of cytochrome c oxidase utilizing high-energy X-rays. Journal of Synchrotron Radiation. 26(4). 912–921. 16 indexed citations

11.

Shimada, Atsuhiro, Naomine Yano, Kyoko Shinzawa‐Itoh, et al.. (2018). X-ray structural analyses of azide-bound cytochrome c oxidases reveal that the H-pathway is critically important for the proton-pumping activity. Journal of Biological Chemistry. 293(38). 14868–14879. 15 indexed citations

12.

Shinzawa‐Itoh, Kyoko, Atsuhiro Shimada, Satoru Shimada, et al.. (2018). Structure of bovine cytochromecoxidase in the ligand-free reduced state at neutral pH. Acta Crystallographica Section F Structural Biology Communications. 74(2). 92–98. 4 indexed citations

13.

Shinzawa‐Itoh, Kyoko, Atsuhiro Shimada, Satoru Shimada, et al.. (2017). Structure of bovine cytochromecoxidase crystallized at a neutral pH using a fluorinated detergent. Acta Crystallographica Section F Structural Biology Communications. 73(7). 416–422. 10 indexed citations

14.

Shimada, Satoru, Kyoko Shinzawa‐Itoh, Junpei Baba, et al.. (2016). Complex structure of cytochrome c –cytochrome c oxidase reveals a novel protein–protein interaction mode. The EMBO Journal. 36(3). 291–300. 101 indexed citations

15.

Yano, Naomine, Kazumasa Muramoto, Atsuhiro Shimada, et al.. (2016). The Mg2+-containing Water Cluster of Mammalian Cytochrome c Oxidase Collects Four Pumping Proton Equivalents in Each Catalytic Cycle. Journal of Biological Chemistry. 291(46). 23882–23894. 63 indexed citations

16.

Shimada, Atsuhiro, et al.. (2013). MutS stimulates the endonuclease activity of MutL in an ATP‐hydrolysis‐dependent manner. FEBS Journal. 280(14). 3467–3479. 18 indexed citations

17.

Morita, R, Atsuhiro Shimada, Masao Inoue, et al.. (2010). Molecular Mechanisms of the Whole DNA Repair System: A Comparison of Bacterial and Eukaryotic Systems. Journal of Nucleic Acids. 2010(1). 179594–179594. 71 indexed citations

18.

Shimada, Atsuhiro, H. Ishikawa, Noriko Nakagawa, Seiki Kuramitsu, & Ryoji Masui. (2010). The first crystal structure of an archaeal metallo‐β‐lactamase superfamily protein; ST1585 from Sulfolobus tokodaii. Proteins Structure Function and Bioinformatics. 78(10). 2399–2402. 14 indexed citations

19.

Fukuzumi, Y., Tomoya Suzuki, Keigo Nakamura, et al.. (2000). Liner-supported cylinder (LSC) technology to realize Ru/Ta/sub 2/O/sub 5//Ru capacitor for future DRAMs. 793–796. 1 indexed citations

20.

Hieda, K., Kazuhiro Eguchi, Hiroshi Tomita, et al.. (1999). Low temperature (Ba,Sr)TiO/sub 3/ capacitor process integration (LTB) technology for gigabit scaled DRAMs. 789–792. 2 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

Explore authors with similar magnitude of impact