Anthony Philippakis

26.7k citations

70 papers · 11.6k indexed · 6 hit papers · h-index 30

Impact in

Genetics top 0.2%
- Genomics and Rare Diseases
- Genetic diversity and population structure
- Genetic Associations and Epidemiology
Cancer Research top 1%
- Cancer Genomics and Diagnostics

Papers in ⓘ

Cardiology and Cardiovascular Medicine 26
- Cardiovascular Function and Risk Factors 10
- Cardiovascular Disease and Adiposity 6
- Atrial Fibrillation Management and Outcomes 5
Genetics 21
- Genetic Associations and Epidemiology 15
- Genomics and Rare Diseases 6

Co-authors: Eric Banks (4 shared papers)Stacey Gabriel (3 shared papers)Mark J. Daly (2 shared papers)Kiran Garimella (2 shared papers)David Altshuler (2 shared papers)Jared Maguire (2 shared papers)Ryan Poplin (1 shared paper)Andrew Kernytsky (1 shared paper)
Journals: Nature Communications (9 papers)Circulation (7 papers)Circulation Genomic and Precision Medicine (4 papers)Nature Genetics (3 papers)Bioinformatics (2 papers)
Partner nations: United States United Kingdom Netherlands

In The Last Decade

Anthony Philippakis

66 papers receiving 11.5k citations

Hit Papers

6 papers align trajectories log scale

Unsupervised removal of systematic background noise from droplet-based single-cell experiments using CellBender 2023 · 218 citations

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if any of the following hold:

it has ≥500 total citations;
it reaches ≥1.5× the top-1% citation threshold for papers in the same subfield and year (the threshold is the minimum needed to enter the top 1%, not the average within it);
it reaches the top citation threshold in at least one of its specific research topics.

2023 Nature Methods
2021 Circulation
2020 Nature Communications
2011 Nature Genetics
2009 Science
2006 Nature Biotechnology

Peers

Countries citing papers authored by Anthony Philippakis

Since Specialization

Citations

This map shows the geographic impact of Anthony Philippakis's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Anthony Philippakis with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Anthony Philippakis more than expected).

Fields of papers citing papers by Anthony Philippakis

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Anthony Philippakis. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Anthony Philippakis. The network helps show where Anthony Philippakis may publish in the future.

Co-authors

The 25 scholars most cited alongside Anthony Philippakis, linked wherever they have co-authored with each other. Click a name or a connecting line to browse the papers they share.

Border = papers with Anthony Philippakis Line = papers co-authored together Anthony Philippakis links everyone, so they are left out of the graph.

All Works

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20 of 20 papers shown

Showing the 20 most-cited of 70 papers — load more, or switch the sort, to bring in the rest.

#	Work
1	A framework for variation discovery and genotyping using next-generation DNA sequencing data Nature Genetics ·Mark A. DePristo, Eric Banks, Ryan Poplin, Kiran Garimella, Jared Maguire, Christopher Hartl, Anthony Philippakis, Guillermo del Angel, Manuel A. Rivas, Matt Hanna, Aaron McKenna, Tim Fennell, Andrew Kernytsky, Andrey Sivachenko, Kristian Cibulskis, Stacey Gabriel, David Altshuler, Mark J. Daly Hit paper breakdown →	2011	7268
2	Diversity and Complexity in DNA Recognition by Transcription Factors Science ·Gwenaël Badis, Michael F. Berger, Anthony Philippakis, Shaheynoor Talukder, Andrew R. Gehrke, Savina Jaeger, Esther T. Chan, Genita Metzler, Anastasia Vedenko, Xiaoyu Chen, Hanna S. Kuznetsov, Chi-Fong Wang, David Coburn, Daniel E. Newburger, Quaid Morris, Timothy R. Hughes, Martha L. Bulyk Hit paper breakdown →	2009	761
3	Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities Nature Biotechnology ·Michael F. Berger, Anthony Philippakis, Aaron M. Qureshi, Fangxue Sherry He, Preston W. Estep, Martha L. Bulyk Hit paper breakdown →	2006	517
4	Variation in Homeodomain DNA Binding Revealed by High-Resolution Analysis of Sequence Preferences Cell ·Michael F. Berger, Gwenaël Badis, Andrew R. Gehrke, Shaheynoor Talukder, Anthony Philippakis, Lourdes Peña‐Castillo, Trevis M. Alleyne, Sanié Mnaimneh, Olga Botvinnik, Esther T. Chan, Faiqua Khalid, Wen Zhang, Daniel E. Newburger, Savina Jaeger, Quaid Morris, Martha L. Bulyk, Timothy R. Hughes	2008	487
5	High-resolution DNA-binding specificity analysis of yeast transcription factors Genome Research ·Cong Zhu, Kelsey J.R.P. Byers, Rachel Patton McCord, Zhenwei Shi, Michael F. Berger, Daniel E. Newburger, Katrina Saulrieta, Zachary D. Smith, Mita V. Shah, Mathangi Radhakrishnan, Anthony Philippakis, Yanhui Hu, Federico De Masi, Marcin Pacek, Andreas Rolfs, Tal V. Murthy, Joshua LaBaer, Martha L. Bulyk	2009	322
6	Polygenic background modifies penetrance of monogenic variants for tier 1 genomic conditions Nature Communications ·Akl C. Fahed, Minxian Wang, Julian R. Homburger, Aniruddh P. Patel, Alexander G. Bick, Cynthia L. Neben, Carmen Lai, Deanna Brockman, Anthony Philippakis, Patrick T. Ellinor, Christopher A. Cassa, Matthew S. Lebo, Kenney Ng, Eric S. Lander, Alicia Y. Zhou, Sekar Kathiresan, Amit V. Khera Hit paper breakdown →	2020	252
7	Unsupervised removal of systematic background noise from droplet-based single-cell experiments using CellBender Nature Methods ·Stephen J. Fleming, Mark Chaffin, Alessandro Arduini, Amer-Denis Akkad, Eric Banks, John C. Marioni, Anthony Philippakis, Patrick T. Ellinor, Mehrtash Babadi Hit paper breakdown →	2023	218
8	Gain-of-function mutations in the mechanically activated ion channel PIEZO2 cause a subtype of Distal Arthrogryposis Proceedings of the National Academy of Sciences ·Bertrand Coste, Gunnar Houge, Michael F. Murray, Nathan O. Stitziel, Michael Bandell, Monica A. Giovanni, Anthony Philippakis, Alexander Hoischen, Gunnar Riemer, Unni Steen, Vidar M. Steen, Jayanti Mathur, James J. Cox, Matthew S. Lebo, Heidi L. Rehm, Scott T. Weiss, John N. Wood, Richard L. Maas, Shamil R. Sunyaev, Ardem Patapoutian	2013	174
9	ECG-Based Deep Learning and Clinical Risk Factors to Predict Atrial Fibrillation Circulation ·Shaan Khurshid, Sam Friedman, Christopher Reeder, Paolo Di Achille, Nathaniel Diamant, Pulkit Singh, Lia X. Harrington, Xin Wang, Mostafa A. Al‐Alusi, Gopal Sarma, Andrea S. Foulkes, Patrick T. Ellinor, Christopher D. Anderson, Jennifer E. Ho, Anthony Philippakis, Puneet Batra, Steven A. Lubitz Hit paper breakdown →	2021	167
10	Analysis of cardiac magnetic resonance imaging in 36,000 individuals yields genetic insights into dilated cardiomyopathy Nature Communications ·James P. Pirruccello, Alexander G. Bick, Minxian Wang, Mark Chaffin, Sam Friedman, Jie Yao, Xiuqing Guo, Bharath Ambale‐Venkatesh, Kent D. Taylor, Wendy S. Post, Stephen S. Rich, João A.C. Lima, Jerome I. Rotter, Anthony Philippakis, Steven A. Lubitz, Patrick T. Ellinor, Amit V. Khera, Sekar Kathiresan, Krishna G. Aragam	2020	129
11	High-throughput RNA isoform sequencing using programmed cDNA concatenation Nature Biotechnology ·Aziz Al’Khafaji, Jonathan T. Smith, Kiran Garimella, Mehrtash Babadi, Victoria Popic, Moshe Sade-Feldman, Michael Gatzen, Siranush Sarkizova, Marc A. Schwartz, Emily M. Blaum, Allyson Day, Maura Costello, Tera Bowers, Stacey Gabriel, Eric Banks, Anthony Philippakis, Genevieve M. Boland, Paul C. Blainey, Nir Hacohen	2023	81
12	Systematic identification of mammalian regulatory motifs' target genes and functions Nature Methods ·Jason Warner, Anthony Philippakis, Savina Jaeger, Fangxue Sherry He, Jolinta Lin, Martha L. Bulyk	2008	76
13	Inherited basis of visceral, abdominal subcutaneous and gluteofemoral fat depots Nature Communications ·Saaket Agrawal, Minxian Wang, Marcus D. R. Klarqvist, Kirk Smith, Joseph H. Shin, Hesam Dashti, Nathaniel Diamant, Seung Hoan Choi, Sean J. Jurgens, Patrick T. Ellinor, Anthony Philippakis, Melina Claussnitzer, Kenney Ng, Miriam S. Udler, Puneet Batra, Amit V. Khera	2022	75
14	Comparing strategies to fine-map the association of common SNPs at chromosome 9p21 with type 2 diabetes and myocardial infarction Nature Genetics ·Jessica Shea, Vineeta Agarwala, Anthony Philippakis, Jared Maguire, Eric Banks, Mark A. DePristo, Brian Thomson, Candace Guiducci, Robert C. Onofrio, Sekar Kathiresan, Stacey Gabriel, Noël P. Burtt, Mark J. Daly, Leif Groop, David Altshuler	2011	65
15	Association of Rare Pathogenic DNA Variants for Familial Hypercholesterolemia, Hereditary Breast and Ovarian Cancer Syndrome, and Lynch Syndrome With Disease Risk in Adults According to Family History JAMA Network Open ·Aniruddh P. Patel, Minxian Wang, Akl C. Fahed, Heather Mason‐Suares, Deanna Brockman, Renée C. Pelletier, Sami S. Amr, Kalotina Machini, Megan Hawley, Leora Witkowski, Christopher Koch, Anthony Philippakis, Christopher A. Cassa, Patrick T. Ellinor, Sekar Kathiresan, Kenney Ng, Matthew S. Lebo, Amit V. Khera	2020	63
16	Expression-Guided In Silico Evaluation of Candidate Cis Regulatory Codes for Drosophila Muscle Founder Cells PLoS Computational Biology ·Anthony Philippakis, Brian W. Busser, Stephen S. Gisselbrecht, Fangxue Sherry He, Beatriz Estrada, Alan M. Michelson, Martha L. Bulyk	2006	59
17	Machine learning enables new insights into genetic contributions to liver fat accumulation Cell Genomics ·Mary E. Haas, James P. Pirruccello, Sam Friedman, Minxian Wang, Connor A. Emdin, Veeral Ajmera, Tracey G. Simon, Julian R. Homburger, Xiuqing Guo, Matthew J. Budoff, Kathleen E. Corey, Alicia Y. Zhou, Anthony Philippakis, Patrick T. Ellinor, Rohit Loomba, Puneet Batra, Amit V. Khera	2021	55
18	Consent Codes: Upholding Standard Data Use Conditions PLoS Genetics ·Stephanie O. M. Dyke, Anthony Philippakis, Jordi Rambla, Dina N. Paltoo, Erin S. Luetkemeier, Bartha Maria Knoppers, Anthony J. Brookes, Dylan Spalding, Mark Thompson, Marco Roos, Kym M. Boycott, Michael Brudno, Matthew E. Hurles, Heidi L. Rehm, Andreas Matern, Marc Fiume, Stephen T. Sherry	2016	49
19	A quantification of preventable unintentional childhood injury mortality in the United States Injury Prevention ·Anthony Philippakis, David Hemenway, Delia Marina Alexe, Nick Dessypris, Themis Spyridopoulos, Eleni Petridou	2004	49
20	How Will Machine Learning Inform the Clinical Care of Atrial Fibrillation? Circulation Research ·Konstantinos C. Siontis, Xiaoxi Yao, James P. Pirruccello, Anthony Philippakis, Peter A. Noseworthy	2020	46

About Anthony Philippakis

Anthony Philippakis is a scholar working on Cardiology and Cardiovascular Medicine, Genetics, Health Informatics, Molecular Biology and Nephrology, having authored 70 papers that have together received 11.6k indexed citations. Recurring topics across this work include Genetic Associations and Epidemiology (15 papers), Cardiovascular Function and Risk Factors (10 papers), Genomics and Chromatin Dynamics (9 papers), Cardiovascular Disease and Adiposity (6 papers), Genomics and Rare Diseases (6 papers), RNA Research and Splicing (5 papers), Cardiac Imaging and Diagnostics (5 papers) and Atrial Fibrillation Management and Outcomes (5 papers). The work is most often cited by research in Genetics (4.0k citations), Cancer Research (1.5k citations), Molecular Biology (6.6k citations), Aging (92 citations) and Health Informatics (49 citations). Anthony Philippakis has collaborated with scholars based in United States, United Kingdom and Netherlands. Frequent co-authors include Eric Banks, Stacey Gabriel, Mark J. Daly, Kiran Garimella, David Altshuler, Jared Maguire, Ryan Poplin, Andrew Kernytsky, Manuel A. Rivas and Tim Fennell. Their work appears in journals such as Nature Communications, Circulation, Circulation Genomic and Precision Medicine, Nature Genetics and Bioinformatics.

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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