Aly A. Khan

6.9k total citations · 2 hit papers
56 papers, 4.3k citations indexed

About

Aly A. Khan is a scholar working on Molecular Biology, Immunology and Cancer Research. According to data from OpenAlex, Aly A. Khan has authored 56 papers receiving a total of 4.3k indexed citations (citations by other indexed papers that have themselves been cited), including 24 papers in Molecular Biology, 24 papers in Immunology and 15 papers in Cancer Research. Recurrent topics in Aly A. Khan's work include T-cell and B-cell Immunology (17 papers), Immune Cell Function and Interaction (14 papers) and MicroRNA in disease regulation (11 papers). Aly A. Khan is often cited by papers focused on T-cell and B-cell Immunology (17 papers), Immune Cell Function and Interaction (14 papers) and MicroRNA in disease regulation (11 papers). Aly A. Khan collaborates with scholars based in United States, Germany and Pakistan. Aly A. Khan's co-authors include Christina S. Leslie, Alexander V. Chervonsky, Leonid Yurkovetskiy, Dionysios A. Antonopoulos, Pavel Volchkov, Laura Graham, Yoshinori Umesaki, Lev Becker, Somaye Hashemifar and Martin L. Miller and has published in prestigious journals such as Science, Proceedings of the National Academy of Sciences and Journal of Biological Chemistry.

In The Last Decade

Aly A. Khan

52 papers receiving 4.2k citations

Hit Papers

align trajectories

What are hit papers?

Hit papers significantly outperform the citation benchmark for their cohort. A paper qualifies if it has ≥500 total citations, achieves ≥1.5× the top-1% citation threshold for papers in the same subfield and year (this is the minimum needed to enter the top 1%, not the average within it), or reaches the top citation threshold in at least one of its specific research topics.

Gender Bias in Autoimmunity Is Influenced by Microbiota

2013 704 citations Leonid Yurkovetskiy, Aly A. Khan et al. Immunity profile →
Lactobacillus rhamnosus GG-supplemented formula expands butyrate-producing bacterial strains in food allergic infants

2015 402 citations Aly A. Khan et al. profile →

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name	h						Papers	Cites
Aly A. Khan United States	27	2.5k	1.2k	1.1k	372	309	56	4.3k
Adam Williams United States	26	2.2k 0.9×	1.9k 1.6×	940 0.8×	531 1.4×	391 1.3×	51	4.8k
Pierre‐Yves Mantel Switzerland	28	1.4k 0.5×	1.7k 1.4×	505 0.4×	539 1.4×	265 0.9×	43	3.6k
Yi Ding China	28	1.9k 0.7×	2.1k 1.8×	388 0.3×	323 0.9×	594 1.9×	109	4.6k
Colin D. Bingle United Kingdom	37	1.7k 0.7×	1.1k 0.9×	347 0.3×	403 1.1×	438 1.4×	101	4.1k
Sarah A. Moore United States	22	966 0.4×	776 0.6×	719 0.6×	163 0.4×	425 1.4×	72	2.8k
Thomas A. Kufer Germany	35	2.1k 0.8×	2.3k 1.9×	368 0.3×	292 0.8×	313 1.0×	77	4.6k
Yuuki Obata Japan	36	2.1k 0.8×	1.3k 1.1×	273 0.2×	402 1.1×	592 1.9×	87	4.0k
Motti Gerlic Israel	26	2.4k 0.9×	1.5k 1.2×	615 0.5×	173 0.5×	391 1.3×	48	3.7k
Daniela Bosisio Italy	37	1.4k 0.5×	3.3k 2.8×	689 0.6×	327 0.9×	840 2.7×	74	5.2k
Youcun Qian China	41	1.8k 0.7×	3.5k 2.9×	1.3k 1.1×	396 1.1×	812 2.6×	63	5.8k

Countries citing papers authored by Aly A. Khan

Since Specialization

Citations

This map shows the geographic impact of Aly A. Khan's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Aly A. Khan with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Aly A. Khan more than expected).

Fields of papers citing papers by Aly A. Khan

Since Specialization

Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Aly A. Khan. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Aly A. Khan. The network helps show where Aly A. Khan may publish in the future.

Co-authorship network of co-authors of Aly A. Khan

This figure shows the co-authorship network connecting the top 25 collaborators of Aly A. Khan. A scholar is included among the top collaborators of Aly A. Khan based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Aly A. Khan. Aly A. Khan is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

Sort: Min cites: Since: Top N: Style:

20 of 20 papers shown

Song, Steven, et al.. (2025). Virtual CRISPR: Can LLMs Predict CRISPR Screen Results?. 354–364.

Lee, Jean, Leonid Yurkovetskiy, Derek Reiman, et al.. (2024). Androgens contribute to sex bias of autoimmunity in mice by T cell-intrinsic regulation of Ptpn22 phosphatase expression. Nature Communications. 15(1). 7688–7688. 2 indexed citations

Reiman, Derek, et al.. (2024). Isotype-aware inference of B cell clonal lineage trees from single-cell sequencing data. Cell Genomics. 4(9). 100637–100637.

Yurkovetskiy, Leonid, Andrey Kuznetsov, Derek Reiman, et al.. (2023). Microbiota-dependent proteolysis of gluten subverts diet-mediated protection against type 1 diabetes. Cell Host & Microbe. 31(2). 213–227.e9. 10 indexed citations

Yang, Aerin, Kevin M. Jude, Ben Lai, et al.. (2023). Deploying synthetic coevolution and machine learning to engineer protein-protein interactions. Science. 381(6656). eadh1720–eadh1720. 18 indexed citations

Daccache, Joe, Kichul Ko, Margaret Veselits, et al.. (2021). Innate-like self-reactive B cells infiltrate human renal allografts during transplant rejection. Nature Communications. 12(1). 4372–4372. 36 indexed citations

Reiman, Derek, Godhev K. Manakkat Vijay, Heping Xu, et al.. (2021). Pseudocell Tracer—A method for inferring dynamic trajectories using scRNAseq and its application to B cells undergoing immunoglobulin class switch recombination. PLoS Computational Biology. 17(5). e1008094–e1008094. 7 indexed citations

Zhang, Renyu, Christopher R. Weber, Robert L. Grossman, & Aly A. Khan. (2020). Evaluating and interpreting caption prediction for histopathology images. 418–435. 2 indexed citations

Neu, Karlynn E., Jenna J. Guthmiller, Min Huang, et al.. (2018). Spec-seq unveils transcriptional subpopulations of antibody-secreting cells following influenza vaccination. Journal of Clinical Investigation. 129(1). 93–105. 26 indexed citations

10.

Cho, Sunglim, Hyang‐Mi Lee, I‐Shing Yu, et al.. (2018). Differential cell-intrinsic regulations of germinal center B and T cells by miR-146a and miR-146b. Nature Communications. 9(1). 2757–2757. 57 indexed citations

11.

Lugt, Bryan Vander, Aly A. Khan, Jason A. Hackney, et al.. (2017). Transcriptional determinants of tolerogenic and immunogenic states during dendritic cell maturation. The Journal of Cell Biology. 216(3). 779–792. 69 indexed citations

12.

Khan, Wali, et al.. (2017). Prevalence and Risk Factors Associated with Intestinal Parasitic Infections among Food Handlers of Swat, Khyber Pakhtunkhwa, Pakistan. Journal of Food and Nutrition Research. 5(5). 331–336. 28 indexed citations

13.

Denzin, Lisa, Aly A. Khan, Francesca Virdis, et al.. (2017). Neutralizing Antibody Responses to Viral Infections Are Linked to the Non-classical MHC Class II Gene H2-Ob. Immunity. 47(2). 310–322.e7. 35 indexed citations

14.

Khan, Wali, et al.. (2015). Diversity of intestinal parasites in male and female students and workers of Education Department of Swat, Pakistan.. Pakistan Journal of Zoology. 47(2). 565–568. 17 indexed citations

15.

Yurkovetskiy, Leonid, Aly A. Khan, Laura Graham, et al.. (2013). Gender Bias in Autoimmunity Is Influenced by Microbiota. Immunity. 39(2). 400–412. 704 indexed citations breakdown →

16.

Lugt, Bryan Vander, Aly A. Khan, Jason A. Hackney, et al.. (2013). Transcriptional programming of dendritic cells for enhanced MHC class II antigen presentation. Nature Immunology. 15(2). 161–167. 204 indexed citations

17.

Glasmacher, Elke, Smita Agrawal, Anne B. Chang, et al.. (2012). A Genomic Regulatory Element That Directs Assembly and Function of Immune-Specific AP-1–IRF Complexes. Science. 338(6109). 975–980. 260 indexed citations

18.

Pastar, Irena, Aly A. Khan, Olivera Stojadinović, et al.. (2012). Induction of Specific MicroRNAs Inhibits Cutaneous Wound Healing. Journal of Biological Chemistry. 287(35). 29324–29335. 101 indexed citations

19.

Buehler, Eugen, Aly A. Khan, Shane Marine, et al.. (2012). siRNA off-target effects in genome-wide screens identify signaling pathway members. Scientific Reports. 2(1). 428–428. 52 indexed citations

20.

Mavrakis, Konstantinos J., Andrew L. Wolfe, Elisa Oricchio, et al.. (2010). Genome-wide RNA-mediated interference screen identifies miR-19 targets in Notch-induced T-cell acute lymphoblastic leukaemia. Nature Cell Biology. 12(4). 372–379. 275 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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