Alexey Fomenkov

3.0k total citations
69 papers, 2.1k citations indexed

About

Alexey Fomenkov is a scholar working on Molecular Biology, Ecology and Genetics. According to data from OpenAlex, Alexey Fomenkov has authored 69 papers receiving a total of 2.1k indexed citations (citations by other indexed papers that have themselves been cited), including 57 papers in Molecular Biology, 32 papers in Ecology and 18 papers in Genetics. Recurrent topics in Alexey Fomenkov's work include Genomics and Phylogenetic Studies (23 papers), Bacteriophages and microbial interactions (19 papers) and Epigenetics and DNA Methylation (15 papers). Alexey Fomenkov is often cited by papers focused on Genomics and Phylogenetic Studies (23 papers), Bacteriophages and microbial interactions (19 papers) and Epigenetics and DNA Methylation (15 papers). Alexey Fomenkov collaborates with scholars based in United States, Russia and France. Alexey Fomenkov's co-authors include Richard J. Roberts, Richard Morgan, Barry Trink, David Sidransky, Tyson A. Clark, Jonas Korlach, Iain A. Murray, Edward A. Ratovitski, Matthew Boitano and Motonobu Osada and has published in prestigious journals such as Proceedings of the National Academy of Sciences, Nucleic Acids Research and Journal of Biological Chemistry.

In The Last Decade

Alexey Fomenkov

68 papers receiving 2.0k citations

Peers — A (Enhanced Table)

Peers by citation overlap · career bar shows stage (early→late) cites · hero ref

Name h Career Trend Papers Cites
Alexey Fomenkov United States 20 1.6k 519 407 335 197 69 2.1k
Suvi Taira Finland 23 871 0.5× 468 0.9× 242 0.6× 302 0.9× 68 0.3× 42 1.9k
Ulf Gerth Germany 29 2.2k 1.4× 304 0.6× 536 1.3× 1.1k 3.3× 163 0.8× 44 3.0k
Zachary C. Ruhe United States 13 1.0k 0.6× 716 1.4× 112 0.3× 390 1.2× 176 0.9× 19 1.7k
Elena Soria Spain 10 1.6k 1.0× 152 0.3× 272 0.7× 376 1.1× 172 0.9× 23 1.9k
Craig A. Strathdee Canada 24 961 0.6× 249 0.5× 232 0.6× 580 1.7× 38 0.2× 38 1.9k
Helga Westers Netherlands 20 1.3k 0.8× 228 0.4× 443 1.1× 842 2.5× 393 2.0× 40 2.0k
Darlene E. Jenkins United States 14 978 0.6× 227 0.4× 124 0.3× 400 1.2× 243 1.2× 14 1.8k
Alan Sloma United States 19 1.2k 0.8× 265 0.5× 310 0.8× 559 1.7× 315 1.6× 25 1.9k
Wil A. M. Loenen Netherlands 16 974 0.6× 138 0.3× 263 0.6× 307 0.9× 45 0.2× 20 1.8k
Ángel Rivera-Calzada United Kingdom 16 895 0.6× 180 0.3× 161 0.4× 241 0.7× 39 0.2× 19 1.4k

Countries citing papers authored by Alexey Fomenkov

Since Specialization
Citations

This map shows the geographic impact of Alexey Fomenkov's research. It shows the number of citations coming from papers published by authors working in each country. You can also color the map by specialization and compare the number of citations received by Alexey Fomenkov with the expected number of citations based on a country's size and research output (numbers larger than one mean the country cites Alexey Fomenkov more than expected).

Fields of papers citing papers by Alexey Fomenkov

Since Specialization
Physical SciencesHealth SciencesLife SciencesSocial Sciences

This network shows the impact of papers produced by Alexey Fomenkov. Nodes represent research fields, and links connect fields that are likely to share authors. Colored nodes show fields that tend to cite the papers produced by Alexey Fomenkov. The network helps show where Alexey Fomenkov may publish in the future.

Co-authorship network of co-authors of Alexey Fomenkov

This figure shows the co-authorship network connecting the top 25 collaborators of Alexey Fomenkov. A scholar is included among the top collaborators of Alexey Fomenkov based on the total number of citations received by their joint publications. Widths of edges represent the number of papers authors have co-authored together. Node borders signify the number of papers an author published with Alexey Fomenkov. Alexey Fomenkov is excluded from the visualization to improve readability, since they are connected to all nodes in the network.

All Works

20 of 20 papers shown
1.
Johnson, Sean R., Peter Weigele, Alexey Fomenkov, et al.. (2024). Domainator, a flexible software suite for domain-based annotation and neighborhood analysis, identifies proteins involved in antiviral systems. Nucleic Acids Research. 53(2). 1 indexed citations
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Kelleher, Philip, Natalia Díaz‐Garrido, Francesca Bottacini, et al.. (2024). Phage defence loci of Streptococcus thermophilus—tip of the anti-phage iceberg?. Nucleic Acids Research. 52(19). 11853–11869. 2 indexed citations
4.
Ettwiller, Laurence, et al.. (2022). Reassembling a cannon in the DNA defense arsenal: Genetics of StySA, a BREX phage exclusion system in Salmonella lab strains. PLoS Genetics. 18(4). e1009943–e1009943. 13 indexed citations
5.
Fomenkov, Alexey, et al.. (2022). High-throughput sequencing of EcoWI restriction fragments maps the genome-wide landscape of phosphorothioate modification at base resolution. PLoS Genetics. 18(9). e1010389–e1010389. 3 indexed citations
6.
Lin, Yu‐Cheng, Alexey Fomenkov, Brian P. Anton, et al.. (2021). Rapid identification of methylase specificity (RIMS-seq) jointly identifies methylated motifs and generates shotgun sequencing of bacterial genomes. Nucleic Acids Research. 49(19). e113–e113. 11 indexed citations
7.
Fomenkov, Alexey, et al.. (2021). Genome archaeology of two laboratory Salmonella enterica enterica sv Typhimurium. G3 Genes Genomes Genetics. 11(9). 5 indexed citations
8.
Xu, Shuang-yong, Elena V. Zemlyanskaya, Zhiyi Sun, et al.. (2021). Characterization of BisI Homologs. Frontiers in Microbiology. 12. 689929–689929. 2 indexed citations
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Coyne, Michael J., Alexey Fomenkov, Jonathan Livny, et al.. (2020). Analysis of a phase-variable restriction modification system of the human gut symbiont Bacteroides fragilis. Nucleic Acids Research. 48(19). 11040–11053. 11 indexed citations
12.
Fomenkov, Alexey, et al.. (2019). Complete Genome Sequence and Methylome Analysis of Sphaerotilus natans subsp. sulfidivorans D-507. Microbiology Resource Announcements. 8(46). 1 indexed citations
13.
Fomenkov, Alexey, Zhiyi Sun, Deborah K. Dila, et al.. (2017). EcoBLMcrX, a classical modification-dependent restriction enzyme in Escherichia coli B: Characterization in vivo and in vitro with a new approach to cleavage site determination. PLoS ONE. 12(6). e0179853–e0179853. 11 indexed citations
14.
Skowron, Piotr M., Brian P. Anton, Richard Morgan, et al.. (2017). The third restriction–modification system from Thermus aquaticus YT-1: solving the riddle of two TaqII specificities. Nucleic Acids Research. 45(15). 9005–9018. 4 indexed citations
15.
Xu, Shuang-yong, Matthew Boitano, Tyson A. Clark, et al.. (2015). Complete Genome Sequence Analysis of Bacillus subtilis T30. Genome Announcements. 3(3). 7 indexed citations
16.
Anton, Brian P., Emmanuel F. Mongodin, Sonia Agrawal, et al.. (2015). Complete Genome Sequence of ER2796, a DNA Methyltransferase-Deficient Strain of Escherichia coli K-12. PLoS ONE. 10(5). e0127446–e0127446. 30 indexed citations
17.
Clark, Tyson A., Iain A. Murray, Richard Morgan, et al.. (2011). Characterization of DNA methyltransferase specificities using single-molecule, real-time DNA sequencing. Nucleic Acids Research. 40(4). e29–e29. 244 indexed citations
18.
Zhu, Zhenyu, Chandra Sekhar Pedamallu, Alexey Fomenkov, Jack S. Benner, & Shuang-yong Xu. (2010). Cloning of NruI and Sbo13I restriction and modification sstems in E. coli and amino acid sequence comparison of M.NruI and M.Sbo13I with other amino-methyltransferases. BMC Research Notes. 3(1). 139–139. 1 indexed citations
19.
Wu, Guojun, Motonobu Osada, Zhongmin Guo, et al.. (2005). ΔNp63α Up-Regulates the Hsp70 Gene in Human Cancer. Cancer Research. 65(3). 758–766. 88 indexed citations
20.
Fomenkov, Alexey, et al.. (1995). Isolation of temperature-sensitive mutants of the BamHI restriction endonuclease. Gene. 157(1-2). 303–310. 2 indexed citations

Rankless uses publication and citation data sourced from OpenAlex, an open and comprehensive bibliographic database. While OpenAlex provides broad and valuable coverage of the global research landscape, it—like all bibliographic datasets—has inherent limitations. These include incomplete records, variations in author disambiguation, differences in journal indexing, and delays in data updates. As a result, some metrics and network relationships displayed in Rankless may not fully capture the entirety of a scholar's output or impact.

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