Citation Impact
Citing Papers
RepeatModeler2 for automated genomic discovery of transposable element families
2020 Standout
Genome-Wide Analysis of Human Long Noncoding RNAs: A Provocative Review
2022
The Ensembl Variant Effect Predictor
2016 Standout
cis-Acting Complex-Trait-Associated lincRNA Expression Correlates with Modulation of Chromosomal Architecture
2017
Ten things you should know about transposable elements
2018
Long Non-Coding RNAs Control Hematopoietic Stem Cell Function
2015
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
2018 Standout
Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line
2018
Transition from inflammation to proliferation: a critical step during wound healing
2016 Standout
Human Stem Cell Resources Are an Inroad to Neandertal DNA Functions
2020 StandoutNobel
Principles of Long Noncoding RNA Evolution Derived from Direct Comparison of Transcriptomes in 17 Species
2015
Function and evolution of local repeats in the Firre locus
2016
The molecular hallmarks of epigenetic control
2016 Standout
Phased diploid genome assembly with single-molecule real-time sequencing
2016
Genetic effects on gene expression across human tissues
2017 StandoutNature
The rise of regulatory RNA
2014
Human ADAR1 Prevents Endogenous RNA from Triggering Translational Shutdown
2018 StandoutNobel
Limb development: a paradigm of gene regulation
2017
Applying genomic and transcriptomic advances to mitochondrial medicine
2021
The multidimensional mechanisms of long noncoding RNA function
2017 Standout
The emerging role of lncRNAs in cancer
2015 Standout
Accurate detection of complex structural variations using single-molecule sequencing
2018
Hallmarks of aging: An expanding universe
2023 Standout
Large mosaic copy number variations confer autism risk
2021
CRISPR–Cas9-mediated base-editing screening in mice identifies DND1 amino acids that are critical for primordial germ cell development
2018
Effective gene expression prediction from sequence by integrating long-range interactions
2021 StandoutNobel
Long Noncoding RNAs in Cancer Pathways
2016 Standout
Evolution to the rescue: using comparative genomics to understand long non-coding RNAs
2016
Genome sequencing and population genomics in non-model organisms
2013
Hypoxia drives glucose transporter 3 expression through hypoxia-inducible transcription factor (HIF)–mediated induction of the long noncoding RNA NICI
2019 StandoutNobel
The single-cell transcriptional landscape of mammalian organogenesis
2019 StandoutNature
A map of constrained coding regions in the human genome
2018
Long non-coding RNAs: new players in cell differentiation and development
2013 Standout
Settling the score: variant prioritization and Mendelian disease
2017
Introducing difference recurrence relations for faster semi-global alignment of long sequences
2018
Canu: scalable and accurate long-read assembly via adaptive k -mer weighting and repeat separation
2017 Standout
Genome editing with CRISPR–Cas nucleases, base editors, transposases and prime editors
2020 Standout
Historical Genomes Reveal the Genomic Consequences of Recent Population Decline in Eastern Gorillas
2018
Towards a complete map of the human long non-coding RNA transcriptome
2018
Drawing a fine line on endogenous retroelement activity
2015
Detection and analysis of ancient segmental duplications in mammalian genomes
2018
Unique features of long non-coding RNA biogenesis and function
2015 Standout
Fast and accurate de novo genome assembly from long uncorrected reads
2017 Standout
A synthetic-diploid benchmark for accurate variant-calling evaluation
2018
Cytoplasmic long noncoding RNAs are frequently bound to and degraded at ribosomes in human cells
2016
Assembly of long, error-prone reads using repeat graphs
2019 Standout
Improvement of the Threespine Stickleback Genome Using a Hi-C-Based Proximity-Guided Assembly
2017
Principles Governing A-to-I RNA Editing in the Breast Cancer Transcriptome
2015
Functions and mechanisms of long noncoding RNAs in lung cancer
2016
Mining museums for historical DNA: advances and challenges in museomics
2021 Standout
DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets
2017 Standout
Combination of short-read, long-read, and optical mapping assemblies reveals large-scale tandem repeat arrays with population genetic implications
2017
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
2017 Standout
Whole-genome deep-learning analysis identifies contribution of noncoding mutations to autism risk
2019
A comprehensive analysis of piRNAs from adult human testis and their relationship with genes and mobile elements
2014
Gene regulation by long non-coding RNAs and its biological functions
2020 Standout
A call for benchmarking transposable element annotation methods
2015
Selection against archaic hominin genetic variation in regulatory regions
2020
Modeling neurodevelopmental disorder-associated humanAGO1mutations inCaenorhabditis elegansArgonautealg-1
2024 StandoutNobel
Minimap2: pairwise alignment for nucleotide sequences
2018 Standout
Mobile Genetic Elements Associated with Antimicrobial Resistance
2018 Standout
Search and sequence analysis tools services from EMBL-EBI in 2022
2022 Standout
Helitrons , the Eukaryotic Rolling-circle Transposable Elements
2015
Long Noncoding RNA and Cancer: A New Paradigm
2017 Standout
De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds
2017 StandoutScience
Complex congenital cardiovascular anomaly in a patient with AGO1 ‐associated disorder
2022
Longer metaphase and fewer chromosome segregation errors in modern human than Neanderthal brain development
2022 StandoutNobel
The Genome 10K Project: A Way Forward
2015
A Novel RNA Motif Mediates the Strict Nuclear Localization of a Long Noncoding RNA
2014
The European Variation Archive: a FAIR resource of genomic variation for all species
2021
Chromatin signatures at transcriptional start sites separate two equally populated yet distinct classes of intergenic long noncoding RNAs
2013
The DisGeNET knowledge platform for disease genomics: 2019 update
2019 Standout
Drastic population fluctuations explain the rapid extinction of the passenger pigeon
2014
Accurate proteome-wide missense variant effect prediction with AlphaMissense
2023 StandoutScienceNobel
Works of Zev Kronenberg being referenced
Improved assembly and variant detection of a haploid human genome using single‐molecule, high‐fidelity long reads
2019
Long-read sequence assembly of the gorilla genome
2016 Science
Genomic Patterns of De Novo Mutation in Simplex Autism
2017
Discovery and genotyping of structural variation from long-read haploid genome sequence data
2016
Transposable Elements Are Major Contributors to the Origin, Diversification, and Regulation of Vertebrate Long Noncoding RNAs
2013
Molecular shifts in limb identity underlie development of feathered feet in two domestic avian species
2016
Using VAAST to Identify Disease‐Associated Variants in Next‐Generation Sequencing Data
2014
Genomic Diversity and Evolution of the Head Crest in the Rock Pigeon
2013 Science