Citation Impact
Citing Papers
Histone demethylase KDM6A directly senses oxygen to control chromatin and cell fate
2019 StandoutScienceNobel
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
2009 StandoutScience
Two isoforms of the essential C. elegans Argonaute CSR-1 differentially regulate sperm and oocyte fertility
2021 StandoutNobel
High burden and pervasive positive selection of somatic mutations in normal human skin
2015 StandoutScience
Metabolomics analysis reveals large effects of gut microflora on mammalian blood metabolites
2009 Standout
VIRTUS: a pipeline for comprehensive virus analysis from conventional RNA-seq data
2020 StandoutNobel
EglN2 associates with the NRF 1‐ PGC 1α complex and controls mitochondrial function in breast cancer
2015 StandoutNobel
DAF-16/FOXO and HLH-30/TFEB function as combinatorial transcription factors to promote stress resistance and longevity
2018 StandoutNobel
ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline
2016
Genome-wide Association of Yorkie with Chromatin and Chromatin-Remodeling Complexes
2013
Genome-wide features of neuroendocrine regulation in Drosophila by the basic helix-loop-helix transcription factor DIMMED
2015 StandoutNobel
Capture‐C reveals preformed chromatin interactions between HIF ‐binding sites and distant promoters
2016 StandoutNobel
Discovering Hematopoietic Mechanisms through Genome-wide Analysis of GATA Factor Chromatin Occupancy
2009
Dysregulation of the epigenetic landscape of normal aging in Alzheimer’s disease
2018
Genetic variation at the 8q24.21 renal cancer susceptibility locus affects HIF binding to a MYC enhancer
2016 StandoutNobel
Dietary restriction protects from age-associated DNA methylation and induces epigenetic reprogramming of lipid metabolism
2017
An integrated encyclopedia of DNA elements in the human genome
2012 StandoutNature
Chromatin Reader Brd4 Functions in Ig Class Switching as a Repair Complex Adaptor of Nonhomologous End-Joining
2014 StandoutNobel
Nucleosome dynamics define transcriptional enhancers
2010
deepTools2: a next generation web server for deep-sequencing data analysis
2016 Standout
Influence of Metabolism on Epigenetics and Disease
2013 StandoutNobel
RNAi screen identifies Brd4 as a therapeutic target in acute myeloid leukaemia
2011 StandoutNature
Analysis of ChIP-seq Data in R/Bioconductor
2017
Nucleosome positioning: bringing order to the eukaryotic genome
2012
Three-dimensional genome architecture: players and mechanisms
2015
In Vivo Residue-specific Histone Methylation Dynamics
2009
Serotonin and Its Role in Colonic Function and in Gastrointestinal Disorders
2006
Covalent histone modifications — miswritten, misinterpreted and mis-erased in human cancers
2010
Cancer Epigenetics: From Mechanism to Therapy
2012 Standout
Identifying ChIP-seq enrichment using MACS
2012
The Human Transcription Factors
2018 Standout
Transcription factors operate across disease loci, with EBNA2 implicated in autoimmunity
2018
H3K79 Methylation Profiles Define Murine and Human MLL-AF4 Leukemias
2008
Single-Molecule Dynamics of Enhanceosome Assembly in Embryonic Stem Cells
2014 StandoutNobel
Hippo Pathway in Organ Size Control, Tissue Homeostasis, and Cancer
2015 Standout
Mapping and analysis of chromatin state dynamics in nine human cell types
2011 StandoutNature
Hypoxia drives glucose transporter 3 expression through hypoxia-inducible transcription factor (HIF)–mediated induction of the long noncoding RNA NICI
2019 StandoutNobel
Super-Enhancers in the Control of Cell Identity and Disease
2013 Standout
A unique chromatin signature uncovers early developmental enhancers in humans
2010 StandoutNature
ngs.plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases
2014
Lipid-droplet-accumulating microglia represent a dysfunctional and proinflammatory state in the aging brain
2020 StandoutNobel
Gene bookmarking accelerates the kinetics of post-mitotic transcriptional re-activation
2011
In vivo genome editing using Staphylococcus aureus Cas9
2015 StandoutNature
Heterogeneous Effects of Direct Hypoxia Pathway Activation in Kidney Cancer
2015 StandoutNobel
Guidance of regulatory T cell development by Satb1-dependent super-enhancer establishment
2016 StandoutNobel
Distinct Foxp3 enhancer elements coordinate development, maintenance, and function of regulatory T cells
2021 StandoutNobel
Short RNAs Are Transcribed from Repressed Polycomb Target Genes and Interact with Polycomb Repressive Complex-2
2010
Chromatin Landscape Dictates HSF Binding to Target DNA Elements
2010
Subnuclear segregation of genes and core promoter factors in myogenesis
2011 StandoutNobel
Transcription factor Ikzf1 associates with Foxp3 to repress gene expression in Treg cells and limit autoimmunity and anti-tumor immunity
2024 StandoutNobel
Modeling gene expression using chromatin features in various cellular contexts
2012
Polycomb-like proteins link the PRC2 complex to CpG islands
2017 Nature
The PI3K Pathway in Human Disease
2017 Standout
Global effects of the CSR-1 RNA interference pathway on the transcriptional landscape
2014
Regulatory T Cell-Specific Epigenomic Region Variants Are a Key Determinant of Susceptibility to Common Autoimmune Diseases
2020 StandoutNobel
Discovery and characterization of chromatin states for systematic annotation of the human genome
2010
lincRNAs act in the circuitry controlling pluripotency and differentiation
2011 StandoutNature
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
2014 Standout
Single-cell transcriptomic analysis of Alzheimer’s disease
2019 StandoutNature
The Polycomb complex PRC2 and its mark in life
2011 StandoutNature
CTCF: Master Weaver of the Genome
2009 Standout
Epigenetic mechanisms in anti‐cancer actions of bioactive food components – the implications in cancer prevention
2012
CLOCK:BMAL1 is a pioneer-like transcription factor
2014 StandoutNobel
Regulation of Estrogen Receptor-mediated Long Range Transcription via Evolutionarily Conserved Distal Response Elements
2008
An integrated approach to dissecting oncogene addiction implicates a Myb-coordinated self-renewal program as essential for leukemia maintenance
2011
Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes
2013 Standout
Genome-wide analysis of human global and transcription-coupled excision repair of UV damage at single-nucleotide resolution
2015 StandoutNobel
Combinatorial patterns of histone acetylations and methylations in the human genome
2008 Standout
CTCF-dependent enhancer-blocking by alternative chromatin loop formation
2008
Regulatory T Cells and Human Disease
2020 StandoutNobel
Gene Regulation in the Third Dimension
2008 Science
Histone H3 lysine 9 di-methylation as an epigenetic signature of the interferon response
2012 StandoutNobel
The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads
2019 Standout
An Interactive Analysis and Exploration Tool for Epigenomic Data
2013
Chromatin organization is a major influence on regional mutation rates in human cancer cells
2012 Nature
Histone H3K27ac separates active from poised enhancers and predicts developmental state
2010 Standout
Sensate Media — Multimodal Electronic Skins as Dense Sensor Networks
2004
Liquid phase condensation in cell physiology and disease
2017 StandoutScience
25th Anniversary Article: The Evolution of Electronic Skin (E‐Skin): A Brief History, Design Considerations, and Recent Progress
2013 Standout
Works of Ying Lei being referenced
Exchange of GATA Factors Mediates Transitions in Looped Chromatin Organization at a Developmentally Regulated Gene Locus
2008
Decreased interstitial cells of Cajal in the sigmoid colon of patients with slow transit constipation
2004
Cistrome: an integrative platform for transcriptional regulation studies
2011
Identifying Positioned Nucleosomes with Epigenetic Marks in Human from ChIP-Seq
2008
Two-tiered wireless sensor network architecture for structural health monitoring
2003
DOT1L/KMT4 Recruitment and H3K79 Methylation Are Ubiquitously Coupled with Gene Transcription in Mammalian Cells
2008