Citation Impact
Citing Papers
STAR: ultrafast universal RNA-seq aligner
2012 Standout
Humanized Foxp2 accelerates learning by enhancing transitions from declarative to procedural performance
2014 StandoutNobel
High-throughput biochemical profiling reveals sequence determinants of dCas9 off-target binding and unbinding
2017 StandoutNobel
A bacterium that degrades and assimilates poly(ethylene terephthalate)
2016 StandoutScience
Dropout: a simple way to prevent neural networks from overfitting
2014 StandoutNobel
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
2014 Standout
FMRP targets distinct mRNA sequence elements to regulate protein expression
2012 Nature
Discovery and functional interrogation of SARS-CoV-2 RNA-host protein interactions
2021 StandoutNobel
HITS-CLIP and Integrative Modeling Define the Rbfox Splicing-Regulatory Network Linked to Brain Development and Autism
2014
Differential expression analysis for sequence count data
2010 Standout
Onto-Tools: an ensemble of web-accessible, ontology-based tools for the functional design and interpretation of high-throughput gene expression experiments
2004
irCLIP platform for efficient characterization of protein–RNA interactions
2016
PAR-CliP - A Method to Identify Transcriptome-wide the Binding Sites of RNA Binding Proteins
2010
The MicroRNA miR-124 Promotes Neuronal Differentiation by Triggering Brain-Specific Alternative Pre-mRNA Splicing
2007
Differential analysis of gene regulation at transcript resolution with RNA-seq
2012 Standout
Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq
2012 StandoutNature
Circular RNAs are a large class of animal RNAs with regulatory potency
2013 StandoutNature
Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis
2014
Alternative isoform regulation in human tissue transcriptomes
2008 StandoutNature
Transcriptome-wide Analysis of Regulatory Interactions of the RNA-Binding Protein HuR
2011
Modular regulatory principles of large non-coding RNAs
2012 StandoutNature
Epithelial-Mesenchymal Transitions in Development and Disease
2009 Standout
High-Resolution Mapping Reveals a Conserved, Widespread, Dynamic mRNA Methylation Program in Yeast Meiosis
2013 StandoutNobel
High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome
2013 StandoutNatureNobel
Deciphering the splicing code
2010 Nature
The genomic landscape of Neanderthal ancestry in present-day humans
2014 StandoutNatureNobel
RBFOX1 regulates both splicing and transcriptional networks in human neuronal development
2012
Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges
2013
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
2008 Standout
CRISPR-Cas9 Circular Permutants as Programmable Scaffolds for Genome Modification
2019 StandoutNobel
The Centrality of RNA
2009
Functional Classification and Experimental Dissection of Long Noncoding RNAs
2018 Standout
Differential expression in SAGE: accounting for normal between-library variation
2003
A ceRNA Hypothesis: The Rosetta Stone of a Hidden RNA Language?
2011 Standout
TRIBE: Hijacking an RNA-Editing Enzyme to Identify Cell-Specific Targets of RNA-Binding Proteins
2016 StandoutNobel
Predicting the sequence specificities of DNA- and RNA-binding proteins by deep learning
2015 Standout
The multilayered complexity of ceRNA crosstalk and competition
2014 StandoutNature
Viral crosslinking and solid-phase purification enables discovery of ribonucleoprotein complexes on incoming RNA virus genomes
2020
The epithelial splicing factors ESRP1 and ESRP2 positively and negatively regulate diverse types of alternative splicing events
2009
Mapping and analysis of chromatin state dynamics in nine human cell types
2011 StandoutNature
Mapping in vivo protein-RNA interactions at single-nucleotide resolution from HITS-CLIP data
2011
New functions for an old variant: no substitute for histone H3.3
2010
miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
2011 Standout
FMRP Stalls Ribosomal Translocation on mRNAs Linked to Synaptic Function and Autism
2011 Standout
RNA-binding proteins in neurodegeneration: Seq and you shall receive
2015
miRNA–target chimeras reveal miRNA 3′-end pairing as a major determinant of Argonaute target specificity
2015 StandoutNobel
Argonaute HITS-CLIP decodes microRNA–mRNA interaction maps
2009 Nature
Natural RNA circles function as efficient microRNA sponges
2013 StandoutNature
RNA and Disease
2009
Comprehensive Analysis of mRNA Methylation Reveals Enrichment in 3′ UTRs and near Stop Codons
2012 Standout
Enterochromaffin Cells Are Gut Chemosensors that Couple to Sensory Neural Pathways
2017 StandoutNobel
Expansion of the eukaryotic proteome by alternative splicing
2010 StandoutNature
An alternative mode of microRNA target recognition
2012
LIN28A Is a Suppressor of ER-Associated Translation in Embryonic Stem Cells
2012
A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins
2011
Ptbp2 represses adult-specific splicing to regulate the generation of neuronal precursors in the embryonic brain
2012
Deep learning and process understanding for data-driven Earth system science
2019 StandoutNature
Protein-RNA networks revealed through covalent RNA marks
2015
Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans
2010
TDP-43 high throughput screening analyses in neurodegeneration: Advantages and pitfalls
2013
Insights into RNA Biology from an Atlas of Mammalian mRNA-Binding Proteins
2012 Standout
Protein–RNA interactions: new genomic technologies and perspectives
2012
Position-dependent alternative splicing activity revealed by global profiling of alternative splicing events regulated by PTB
2010
The YTH Domain Is a Novel RNA Binding Domain
2010
Splicing regulation: From a parts list of regulatory elements to an integrated splicing code
2008
Dynamic recruitment of microRNAs to their mRNA targets in the regenerating liver
2013
Pre-mRNA splicing: where and when in the nucleus
2011
Genome-wide Analysis of Alternative Pre-mRNA Splicing and RNA-Binding Specificities of the Drosophila hnRNP A/B Family Members
2009
HITS‐CLIP: panoramic views of protein–RNA regulation in living cells
2010
The Noncoding RNA Revolution—Trashing Old Rules to Forge New Ones
2014 Standout
DNA-PKcs has KU-dependent function in rRNA processing and haematopoiesis
2020 StandoutNatureNobel
N6-methyladenosine-dependent regulation of messenger RNA stability
2013 StandoutNature
CLIP: Construction of cDNA libraries for high-throughput sequencing from RNAs cross-linked to proteins in vivo
2009
Genome-wide Analysis of PTB-RNA Interactions Reveals a Strategy Used by the General Splicing Repressor to Modulate Exon Inclusion or Skipping
2009
Dynamic Regulation of Alternative Splicing by Silencers that Modulate 5′ Splice Site Competition
2008
Histone variants — ancient wrap artists of the epigenome
2010
lincRNAs act in the circuitry controlling pluripotency and differentiation
2011 StandoutNature
Transcriptome-wide Identification of RNA-Binding Protein and MicroRNA Target Sites by PAR-CLIP
2010 Standout
Quantitative analysis of RNA-protein interactions on a massively parallel array reveals biophysical and evolutionary landscapes
2014
hnRNP Proteins and Splicing Control
2007
Two new and distinct roles for Drosophila Argonaute-2 in the nucleus: alternative pre-mRNA splicing and transcriptional repression
2013
RNA processing and its regulation: global insights into biological networks
2009
Small RNAs are modified with N-glycans and displayed on the surface of living cells
2021 StandoutNobel
The evolution of gene expression levels in mammalian organs
2011 StandoutNatureNobel
The mRNA-Bound Proteome and Its Global Occupancy Profile on Protein-Coding Transcripts
2012
Regulation of Vertebrate Nervous System Alternative Splicing and Development by an SR-Related Protein
2009
Hepatitis C Virus RNA Functionally Sequesters miR-122
2015 StandoutNobel
Genome Regulation by Long Noncoding RNAs
2012 Standout
RNA–protein analysis using a conditional CRISPR nuclease
2013 StandoutNobel
Accumulation of the FACT complex, as well as histone H3.3, serves as a target marker for somatic hypermutation
2013 StandoutNobel
Quantitative mass spectrometry and PAR-CLIP to identify RNA-protein interactions
2012
Bayesian prediction of tissue-regulated splicing using RNA sequence and cellular context
2011
Multiplexed RNA structure characterization with selective 2′-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)
2011 StandoutNobel
Cancer-associated regulation of alternative splicing
2009
Ontological analysis of gene expression data: current tools, limitations, and open problems
2005
Identification of DNA cleavage- and recombination-specific hnRNP cofactors for activation-induced cytidine deaminase
2015 StandoutNobel
Excavating Neandertal and Denisovan DNA from the genomes of Melanesian individuals
2016 StandoutScienceNobel
Integrative Modeling Defines the Nova Splicing-Regulatory Network and Its Combinatorial Controls
2010 Science
Trans -Splicing in Trypanosomes: Machinery and Its Impact on the Parasite Transcriptome
2011
A post-transcriptional regulatory switch in polypyrimidine tract-binding proteins reprograms alternative splicing in developing neurons
2007
Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions
2012
RNA Regulation in Neurologic Disease and Cancer
2010
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
2013 Standout
Comparative ribosome profiling reveals extensive translational complexity in differentTrypanosoma bruceilife cycle stages
2014
Systematic discovery of regulated and conserved alternative exons in the mammalian brain reveals NMD modulating chromatin regulators
2015
Liquid phase condensation in cell physiology and disease
2017 StandoutScience
Works of Xuning Wang being referenced
POWER_SAGE: comparing statistical tests for SAGE experiments
2000
An RNA map predicting Nova-dependent splicing regulation
2006 Nature
HITS-CLIP yields genome-wide insights into brain alternative RNA processing
2008 Nature
Genome-wide analysis of mRNA abundance in two life-cycle stages of Trypanosoma brucei and identification of splicing and polyadenylation sites
2010
Four histone variants mark the boundaries of polycistronic transcription units in Trypanosoma brucei
2009