Standout Papers
Citation Impact
Citing Papers
Vaginal microbiome of reproductive-age women
2010 Standout
The diversity and biogeography of soil bacterial communities
2006 Standout
Diversity of the Human Intestinal Microbial Flora
2005 StandoutScience
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
2010 Standout
Commensal Bifidobacterium promotes antitumor immunity and facilitates anti–PD-L1 efficacy
2015 StandoutScience
Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa
2010 Standout
Intestinal Inflammation Targets Cancer-Inducing Activity of the Microbiota
2012 StandoutScience
Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns
2010 Standout
Evolution of Mammals and Their Gut Microbes
2008 StandoutScience
Molecular characterization and clonal diversity of methicillin-susceptible Staphylococcus aureus in milk of cows with mastitis in Brazil
2013
On the fitness of microbial taxonomy
2012
Evidence for dose-dependent effects on plant growth by Stenotrophomonas strains from different origins
2003
Genotypic and phenotypic diversity in populations of plant-probiotic Pseudomonas spp. colonizing roots
2007
Linking bacterial identities and ecosystem processes: can ‘omic’ analyses be more than the sum of their parts?
2010
Combinatorial and computational challenges for biocatalyst design
2001 StandoutNatureNobel
Diversity of the Vaginal Microbiome Correlates With Preterm Birth
2013
Viruses in the faecal microbiota of monozygotic twins and their mothers
2010 StandoutNature
Phylogenetic identification of Aeromonas strains isolated from carcasses of pig as new members of the species Aeromonas allosaccharophila
2006
PhyloChip hybridization uncovered an enormous bacterial diversity in the rhizosphere of different potato cultivars: many common and few cultivar-dependent taxa
2010
Dynamics and associations of microbial community types across the human body
2014 StandoutNature
The rhizosphere microbiome: significance of plant beneficial, plant pathogenic, and human pathogenic microorganisms
2013 Standout
Complete nitrification by Nitrospira bacteria
2015 StandoutNature
Metagenomic biomarker discovery and explanation
2011 Standout
TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy
2019 Standout
Defining the core Arabidopsis thaliana root microbiome
2012 StandoutNature
Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota
2012 StandoutNature
Severe Staphylococcus aureus Infections Caused by Clonally Related Community-Acquired Methicillin-Susceptible and Methicillin-Resistant Isolates
2003
Pyrosequencing reveals a contrasted bacterial diversity between oak rhizosphere and surrounding soil
2010
Towards a prokaryotic genomic taxonomy
2004
Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere
2009 Standout
Re-evaluating prokaryotic species
2005
Reclassification of Rhodobium marinum and Rhodobium pfennigii as Afifella marina gen. nov. comb. nov. and Afifella pfennigii comb. nov., a new genus of photoheterotrophic Alphaproteobacteria and emended descriptions of Rhodobium, Rhodobium orientis and Rhodobium gokarnense
2008
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
2012 Standout
Persistence of soil organic matter as an ecosystem property
2011 StandoutNature
The All-Species Living Tree project: A 16S rRNA-based phylogenetic tree of all sequenced type strains
2008
Methicillin-Resistant S. aureus Infections among Patients in the Emergency Department
2006 Standout
Effect of primer mismatch, annealing temperature and PCR cycle number on 16S rRNA gene-targetting bacterial community analysis
2007
A marine microbial consortium apparently mediating anaerobic oxidation of methane
2000 StandoutNature
Archaea predominate among ammonia-oxidizing prokaryotes in soils
2006 StandoutNature
Opinion: The Species Problem, Can We Achieve a Universal Concept?
2003
Comparison of Community- and Health Care–Associated Methicillin-Resistant <EMPH TYPE="ITAL">Staphylococcus aureus</EMPH> Infection
2003
Phylogenomic Study of Burkholderia glathei-like Organisms, Proposal of 13 Novel Burkholderia Species and Emended Descriptions of Burkholderia sordidicola, Burkholderia zhejiangensis, and Burkholderia grimmiae
2016
Topographic diversity of fungal and bacterial communities in human skin
2013 StandoutNature
The reach of the genome signature in prokaryotes.
2006
Innate immunity and intestinal microbiota in the development of Type 1 diabetes
2008 StandoutNature
Genome-Based Taxonomic Classification of the Phylum Actinobacteria
2018 Standout
Suppression of the coffee-ring effect by shape-dependent capillary interactions
2011 StandoutNature
A genetic basis for Pseudomonas aeruginosa biofilm antibiotic resistance
2003 StandoutNature
Genomic and Genetic Diversity within the Pseudomonas fluorescens Complex
2016
Evaluation and Optimization of DNA Extraction and Purification Procedures for Soil and Sediment Samples
1999 Standout
Molecular tools in rhizosphere microbiology—from single-cell to whole-community analysis
2009
Aeromonas culicicola Pidiyar et al. 2002 is a later subjective synonym of Aeromonas veronii Hickman-Brenner et al. 1987
2005
An ecological perspective on bacterial biodiversity
2004
Search and Discovery Strategies for Biotechnology: the Paradigm Shift
2000
Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
2012 Standout
Microbial diversity and soil functions
2017
Detection of polychlorinated biphenyl degradation genes in polluted sediments by direct DNA extraction and polymerase chain reaction
1993
Phylogenetic analysis of members of the genus Aeromonas based on gyrB gene sequences
2003
Plant-driven selection of microbes
2008
Anoxybacillus contaminans sp. nov. and Bacillus gelatini sp. nov., isolated from contaminated gelatin batches
2004
Phylogenetic analysis of the genus Aeromonas based on two housekeeping genes
2004
Global trends in antimicrobial use in food animals
2015 Standout
Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy
2007 Standout
Microbial diversity and soil functions
2003
Shifting the genomic gold standard for the prokaryotic species definition
2009 Standout
Droplet Evaporation Study Applied to DNA Chip Manufacturing
2005
Frequent Carriage of Panton-Valentine Leucocidin Genes by Staphylococcus aureus Isolates from Surgically Drained Abscesses
2005
Genetic relationships of Aeromonas strains inferred from 16S rRNA, gyrB and rpoB gene sequences
2006
Commensal Host-Bacterial Relationships in the Gut
2001 StandoutScience
Rhizosphere engineering and management for sustainable agriculture
2009
THE ROLE OF ROOT EXUDATES IN RHIZOSPHERE INTERACTIONS WITH PLANTS AND OTHER ORGANISMS
2006 Standout
Aeromonas bivalvium sp. nov., isolated from bivalve molluscs
2007
Enrichment and diversity of plant-probiotic microorganisms in the rhizosphere of hybrid maize during four growth cycles
2007
Taxonomic use of DNA G+C content and DNA–DNA hybridization in the genomic age
2014
Direct DNA extraction for PCR-mediated assays of soil organisms
1995
Comparison of AFLP and rep-PCR genomic fingerprinting with DNA-DNA homology studies: Xanthomonas as a model system.
2000
Severe Staphylococcal Sepsis in Adolescents in the Era of Community-Acquired Methicillin-Resistant Staphylococcus aureus
2005
Use of the novel phylogenetic marker dnaJ and DNA–DNA hybridization to clarify interrelationships within the genus Aeromonas
2007
Phylogenetic analysis and in situ identification of bacteria in activated sludge
1997
Quantitative analysis of ammonia oxidising bacteria using competitive PCR
2000
Gold Nanoparticles in Chemical and Biological Sensing
2012 Standout
Comparison of rhizobacterial community composition in soil suppressive or conducive to tobacco black root rot disease
2009
The bacterial species dilemma and the genomic–phylogenetic species concept
2006
Quantitative cell lysis of indigenous microorganisms and rapid extraction of microbial DNA from sediment
1994
Genomic insights that advance the species definition for prokaryotes
2005 Standout
Green fluorescent protein as a marker to monitor survival of phenanthrene-mineralizing Pseudomonas sp. UG14Gr in creosote-contaminated soil
1998
The GenusAeromonas: Taxonomy, Pathogenicity, and Infection
2010 Standout
Rapid Method for Coextraction of DNA and RNA from Natural Environments for Analysis of Ribosomal DNA- and rRNA-Based Microbial Community Composition
2000
Harnessing the rhizosphere microbiome through plant breeding and agricultural management
2012
Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis
1997 Standout
Stenotrophomonas maltophilia: an Emerging Global Opportunistic Pathogen
2012 Standout
Recent Advances in Petroleum Microbiology
2003 Standout
Preterm labor: One syndrome, many causes
2014 StandoutScience
Detection and counting of Nitrobacter populations in soil by PCR
1995
Microbial Biofilms: from Ecology to Molecular Genetics
2000 Standout
Resistance, resilience, and redundancy in microbial communities
2008 Standout
Interference of humic acids and DNA extracted directly from soil in detection and transformation of recombinant DNA from bacteria and a yeast
1993
A paralleled readout system for an electrical DNA-hybridization assay based on a microstructured electrode array
2003
The Long-Term Stability of the Human Gut Microbiota
2013 StandoutScience
Distinct Microbial Communities within the Endosphere and Rhizosphere of Populus deltoides Roots across Contrasting Soil Types
2011
Microbiological and Clinical Aspects of Infection Associated with Stenotrophomonas maltophilia
1998 Standout
DNA–DNA hybridization values and their relationship to whole-genome sequence similarities
2007 Standout
Integrating genomics into the taxonomy and systematics of the Bacteria and Archaea
2014
Molecular communication in the rhizosphere
2008
Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA
1997 Standout
The bacterial species definition in the genomic era
2006
Caenorhabditis elegans responses to bacteria from its natural habitats
2016 StandoutNobel
Small-Scale DNA Sample Preparation Method for Field PCR Detection of Microbial Cells and Spores in Soil
1998
Towards a Genome-Based Taxonomy for Prokaryotes
2005
Works of Xavier Nesme being referenced
Development and validation of a prototype 16S rRNA‐based taxonomic microarray for Alphaproteobacteria
2005
Comparison Between Electrochemical and Optoelectrochemical Impedance Measurements for Detection of DNA Hybridization
2000
Engineering Root Exudation of Lotus toward the Production of Two Novel Carbon Compounds Leads to the Selection of Distinct Microbial Populations in the Rhizosphere
2004
GC-Content Evolution in Bacterial Genomes: The Biased Gene Conversion Hypothesis Expands
2015
Direct conjugal transfers of Ti plasmid to soil microflora
1999
A Highly Selectable and Highly Transferable Ti Plasmid to Study Conjugal Host Range and Ti Plasmid Dissemination in Complex Ecosystems
2004
Diversity and Genetic Relatedness within Genera Xanthomonas and Stenotrophomonas Using Restriction Endonuclease Site Differences of PCR-amplified 16S rRNA Gene
1995
Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology.
2002 Standout
Relationships between Staphylococcus aureus Genetic Background, Virulence Factors, agr Groups (Alleles), and Human Disease
2002
Immobilization of single-stranded DNA fragments to solid surfaces and their repeatable specific hybridization: covalent binding or adsorption?
2004
Detection and enumeration of bacteria in soil by direct DNA extraction and polymerase chain reaction
1992
Comparison of Randomly Amplified Polymorphic DNA with Amplified Fragment Length Polymorphism To Assess Genetic Diversity and Genetic Relatedness within Genospecies III of Pseudomonas syringae
1998
Potential of a 16S rRNA-Based Taxonomic Microarray for Analyzing the Rhizosphere Effects of Maize on Agrobacterium spp. and Bacterial Communities
2006
Quantification of Bias Related to the Extraction of DNA Directly from Soils
1999
Relationship between Spatial and Genetic Distance in Agrobacterium spp. in 1 Cubic Centimeter of Soil
2003
Seasonal Fluctuations and Long-Term Persistence of Pathogenic Populations of Agrobacterium spp. in Soils
2002
Novel Tellurite-Amended Media and Specific Chromosomal and Ti Plasmid Probes for Direct Analysis of Soil Populations of Agrobacterium Biovars 1 and 2
2001