Citation Impact
Citing Papers
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
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RNA tertiary interactions in the large ribosomal subunit: The A-minor motif
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The biomass distribution on Earth
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The diversity and biogeography of soil bacterial communities
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2006
Diversity of the Human Intestinal Microbial Flora
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Miniprimer PCR, a New Lens for Viewing the Microbial World
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Bacterial Community Variation in Human Body Habitats Across Space and Time
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Methyl-compound use and slow growth characterize microbial life in 2-km-deep subseafloor coal and shale beds
2017
Protein structure determination using metagenome sequence data
2017 StandoutScienceNobel
Identification and functional analysis of genes controlling biosynthesis of 2-methylisoborneol
2008 StandoutNobel
Evolution of Mammals and Their Gut Microbes
2008 StandoutScience
Microbial co-occurrence patterns in deep Precambrian bedrock fracture fluids
2016
Diversity ofPlanctomycetesin Soil in Relation to Soil History and Environmental Heterogeneity
2006
Genetic manipulation of Patescibacteria provides mechanistic insights into microbial dark matter and the epibiotic lifestyle
2023 StandoutNobel
A core gut microbiome in obese and lean twins
2008 StandoutNature
Bellerophon: a program to detect chimeric sequences in multiple sequence alignments
2004
A compilation of large subunit (23S and 23S-like) ribosomal RNA structures: 1993
1993
The ribosomal database project
1993
The Diversity of Archaea and Bacteria in Association with the Roots of Zea mays L.
2001
Microbial diversity and function in soil: from genes to ecosystems
2002
Development of the Human Infant Intestinal Microbiota
2007 Standout
Linking bacterial identities and ecosystem processes: can ‘omic’ analyses be more than the sum of their parts?
2010
Combinatorial and computational challenges for biocatalyst design
2001 StandoutNatureNobel
Extrinsic regulators of epithelial tumor progression: metalloproteinases
2000
Testing the functional significance of microbial composition in natural communities
2007
New CRISPR–Cas systems from uncultivated microbes
2016 StandoutNatureNobel
Complete nitrification by a single microorganism
2015 Nature
Complete nitrification by Nitrospira bacteria
2015 StandoutNature
Geobacter
2011
The Hallmarks of Cancer
2000 Standout
Isolation of an autotrophic ammonia-oxidizing marine archaeon
2005 StandoutNature
Defining the core Arabidopsis thaliana root microbiome
2012 StandoutNature
Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota
2012 StandoutNature
The impact of grassland management regime on the community structure of selected bacterial groups in soils
2003
Methane-consuming archaebacteria in marine sediments
1999 Nature
Dissimilatory Fe(III) and Mn(IV) Reduction
2004
Novel forms of anaerobic respiration of environmental relevance
2000
Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere
2009 Standout
Phylogenetic relationships ofThiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments
1995
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
2012 Standout
Persistence of soil organic matter as an ecosystem property
2011 StandoutNature
First Investigation of the Microbiology of the Deepest Layer of Ocean Crust
2010
Identifying microbial diversity in the natural environment: A molecular phylogenetic approach
1996
Review and re-analysis of domain-specific 16S primers
2003
Characterisation of microbial community composition of a Siberian tundra soil by fluorescence in situ hybridisation
2004
Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria
2009 Nature
The rise of oxygen in Earth’s early ocean and atmosphere
2014 StandoutNature
Nitrosomonas Nm143-like ammonia oxidizers and Nitrospira marina-like nitrite oxidizers dominate the nitrifier community in a marine aquaculture biofilm
2008
Worlds within worlds: evolution of the vertebrate gut microbiota
2008
The Earth’s bounty: assessing and accessing soil microbial diversity
1999
Methanogenic Pathway and Archaeal Community Structure in the Sediment of Eutrophic Lake Dagow: Effect of Temperature
2004
A marine microbial consortium apparently mediating anaerobic oxidation of methane
2000 StandoutNature
Archaea predominate among ammonia-oxidizing prokaryotes in soils
2006 StandoutNature
Taxonomic, Phylogenetic, and Ecological Diversity of Methanogenic Archaea
2000
Genomic studies of uncultivated archaea
2005
Novel lineages of Planctomycetes densely colonize the alkaline gut of soil‐feeding termites ( Cubitermes spp.)
2008
Diversity, stability and resilience of the human gut microbiota
2012 StandoutNature
Bacterial volatiles: the smell of small organisms
2007
Microbial Communities in Long-Term, Water-Flooded Petroleum Reservoirs with Different in situ Temperatures in the Huabei Oilfield, China
2012
Community structure and metabolism through reconstruction of microbial genomes from the environment
2004 StandoutNature
Belowground biodiversity and ecosystem functioning
2014 StandoutNature
Living inside plants: bacterial endophytes
2011
Albaflavenone, a sesquiterpene ketone with a zizaene skeleton produced by a streptomycete with a new rope morphology.
1994
Enrichment and Genome Sequence of the Group I.1a Ammonia-Oxidizing Archaeon “Ca. Nitrosotenuis uzonensis” Representing a Clade Globally Distributed in Thermal Habitats
2013
Extracellular electron transfer via microbial nanowires
2005 StandoutNature
Ammonia-Oxidizing Bacteria: A Model for Molecular Microbial Ecology
2001
Organization of the bacterial chromosome
1990
An ecological perspective on bacterial biodiversity
2004
Search and Discovery Strategies for Biotechnology: the Paradigm Shift
2000
Microbial community structure and global trace gases
1998
23S rRNA base pair 2057–2611 determines ketolide susceptibility and fitness cost of the macrolide resistance mutation 2058A→G
2005 StandoutNobel
Microbial diversity and soil functions
2017
Estimation of diversity and community structure through restriction fragment length polymorphism distribution analysis of bacterial 16S rRNA genes from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii
1994
Soil properties associated with organic matter-mediated suppression of bean root rot in field soil amended with fresh and composted paper mill residuals
2007
Phylum- and Class-Specific PCR Primers for General Microbial Community Analysis
2005
Detection of polychlorinated biphenyl degradation genes in polluted sediments by direct DNA extraction and polymerase chain reaction
1993
Host-Bacterial Mutualism in the Human Intestine
2005 StandoutScience
Response of soil microbial biomass and community composition to chronic nitrogen additions at Harvard forest
2004
Use of Molecular and Isotopic Techniques To Monitor the Response of Autotrophic Ammonia-Oxidizing Populations of the β Subdivision of the Class Proteobacteria in Arable Soils to Nitrogen Fertilizer
1999
Novel folded protein domains generated by combinatorial shuffling of polypeptide segments
2000 StandoutNobel
Beyond fossil fuel–driven nitrogen transformations
2018 StandoutScienceNobel
Molecular Analysis of Bacterial Community Structure and Diversity in Unimproved and Improved Upland Grass Pastures
1999
Diversity and abundance of Crenarchaeota in terrestrial habitats studied by 16S RNA surveys and real time PCR
2003
Phylogenetic analysis of the hyperthermophilic pink filament community in Octopus Spring, Yellowstone National Park
1994
Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy
2007 Standout
Microbial diversity and soil functions
2003
Community Structure, Cellular rRNA Content, and Activity of Sulfate-Reducing Bacteria in Marine Arctic Sediments
2000
The microbial destruction of chitin, pectin, and cellulose in soils
2009
Interactions Between the Microbiota and the Immune System
2012 StandoutScience
The Neoproterozoic oxygenation event: Environmental perturbations and biogeochemical cycling
2011
Transcriptomic and Genetic Analysis of Direct Interspecies Electron Transfer
2013
Microbial Biogeography: From Taxonomy to Traits
2008 Science
Decoupling function and taxonomy in the global ocean microbiome
2016 StandoutScience
Occurrence, Classification, and Biological Function of Hydrogenases: An Overview
2007 Standout
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
1995 Standout
Ammonia-oxidizing communities in agricultural soil incubated with organic waste residues
2005
Empirical and Theoretical Bacterial Diversity in Four Arizona Soils
2002
Complete Genome Sequence of Nitrosospira multiformis , an Ammonia-Oxidizing Bacterium from the Soil Environment
2008
A Bioinformatician's Guide to Metagenomics
2008
Programmed DNA destruction by miniature CRISPR-Cas14 enzymes
2018 StandoutScienceNobel
Defining the Normal Bacterial Flora of the Oral Cavity
2005 Standout
Bacterial Diversity in Human Subgingival Plaque
2001 Standout
Impact of Culture-Independent Studies on the Emerging Phylogenetic View of Bacterial Diversity
1998 Standout
Molecular Characterization of the Diversity and Distribution of a Thermal Spring Microbial Community by Using rRNA and Metabolic Genes
2008
Influence of Elevated CO2on the Fungal Community in a Coastal Scrub Oak Forest Soil Investigated with Terminal-Restriction Fragment Length Polymorphism Analysis
2002
A psychrophilic crenarchaeon inhabits a marine sponge: Cenarchaeum symbiosum gen. nov., sp. nov.
1996
Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species
1995
Phylogenetic analysis and in situ identification of bacteria in activated sludge
1997
Identification of active methylotroph populations in an acidic forest soil by stable-isotope probing c cThe GenBank accession numbers for the sequences reported in this paper are AY080911–AY080961.
2002
Quantitative analysis of ammonia oxidising bacteria using competitive PCR
2000
Molecular phylogeny of Archaea from soil
1997
Methane-Oxidizing Bacteria in a California Upland Grassland Soil: Diversity and Response to Simulated Global Change
2005
Taxonomic Note: A Place for DNA-DNA Reassociation and 16S rRNA Sequence Analysis in the Present Species Definition in Bacteriology
1994 Standout
The evolution of the sulfur cycle
1999
2013
Quantitative cell lysis of indigenous microorganisms and rapid extraction of microbial DNA from sediment
1994
Screening of a Fosmid Library of Marine Environmental Genomic DNA Fragments Reveals Four Clones Related to Members of the Order Planctomycetales
1998
Archaeal Diversity in Waters from Deep South African Gold Mines
2001
Effect of Temperature on Carbon and Electron Flow and on the Archaeal Community in Methanogenic Rice Field Soil
2000
Number, viability, and diversity of the filterable forms of prokaryotes in sphagnous high-moor peat
2014
Influence of Inorganic Nitrogen Management Regime on the Diversity of Nitrite-Oxidizing Bacteria in Agricultural Grassland Soils
2005
The Domain-specific Probe EUB338 is Insufficient for the Detection of all Bacteria: Development and Evaluation of a more Comprehensive Probe Set
1999 Standout
Identification of Acetate-Assimilating Microorganisms under Methanogenic Conditions in Anoxic Rice Field Soil by Comparative Stable Isotope Probing of RNA
2006
A Molecular View of Microbial Diversity and the Biosphere
1997 StandoutScience
Comparison of 16S rRNA, nifD, recA, gyrB, rpoB and fusA genes within the family Geobacteraceae fam. nov.
2004
Fe(III) and S0 reduction by Pelobacter carbinolicus
1995
Bioinspired Metal–Organic Framework Catalysts for Selective Methane Oxidation to Methanol
2018 StandoutNobel
Molecular phylogenetic analysis of a soil microbial community in a soybean field
1995
Phylogenetic analysis of dissimilatory Fe(III)-reducing bacteria
1996
The unique biochemistry of methanogenesis
2002
Ammonia-oxidizing bacteria respond to multifactorial global change
2004
DNA recovery from soils of diverse composition
1996 Standout
Resistance, resilience, and redundancy in microbial communities
2008 Standout
Recognition of chimeric small-subunit ribosomal DNAs composed of genes from uncultivated microorganisms
1994
Bacterial diversity in deep-sea sediments from different depths
1999
The Microbial Engines That Drive Earth's Biogeochemical Cycles
2008 StandoutScience
Methane-Oxidizing Enzymes: An Upstream Problem in Biological Gas-to-Liquids Conversion
2016
Methanogenic archaea are globally ubiquitous in aerated soils and become active under wet anoxic conditions
2011
Improved detection of soil microorganisms using fluorescence in situ hybridization (FISH) and catalyzed reporter deposition (CARD-FISH)
2008
Application of Real-Time PCR To Study Effects of Ammonium on Population Size of Ammonia-Oxidizing Bacteria in Soil
2004
Characterization of uncultivated prokaryotes: isolation and analysis of a 40-kilobase-pair genome fragment from a planktonic marine archaeon
1996
A new model for electron flow during anaerobic digestion: direct interspecies electron transfer to Methanosaeta for the reduction of carbon dioxide to methane
2013 Standout
Community Structure Analyses Are More Sensitive to Differences in Soil Bacterial Communities than Anonymous Diversity Indices
2006
Genomic resolution of a cold subsurface aquifer community provides metabolic insights for novel microbes adapted to high CO 2 concentrations
2016
Phylogeny of All Recognized Species of Ammonia Oxidizers Based on Comparative 16S rRNA and amoA Sequence Analysis: Implications for Molecular Diversity Surveys
2000
Terpene synthases are widely distributed in bacteria
2014 StandoutNobel
Cloning and sequence analysis of two copies of a 23S rRNA gene from Helicobacter pylori and association of clarithromycin resistance with 23S rRNA mutations
1997
Evaluation of prokaryotic diversity by restrictase digestion of 16S rDNA directly amplified from hypersaline environments
1995
Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA
1997 Standout
Caenorhabditis elegans responses to bacteria from its natural habitats
2016 StandoutNobel
Transcriptional Response of Nitrifying Communities to Wetting of Dry Soil
2013
Phylogeny of not-yet-cultured spirochetes from termite guts
1996
Microbial Diversity and Community Structure in Two Different Agricultural Soil Communities
1998
Biochemistry of methanogenesis: a tribute to Marjory Stephenson:1998 Marjory Stephenson Prize Lecture
1998 Standout
Microbial Diversity in a Hydrocarbon- and Chlorinated-Solvent-Contaminated Aquifer Undergoing Intrinsic Bioremediation
1998
Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors
1995
Knowledge accumulation and resolution of data inconsistencies during the integration of microbial information sources
2005
Promoting direct interspecies electron transfer with activated carbon
2012
Works of Werner Liesack being referenced
Linking activity, composition and seasonal dynamics of atmospheric methane oxidizers in a meadow soil
2011
Phylogenetic Relationship of the Twenty-One DNA Groups of the Genus Acinetobacter as Revealed by 16S Ribosomal DNA Sequence Analysis
1997
Complete nucleotide sequence of the Mycobacterium leprae 23 S and 5 S rRNA genes plus flanking regions and their potential in designing diagnostic oligonucleotide probes
1991
Phylogenetic diversity and metagenomics of candidate division OP3
2010
Retrieval of first genome data for rice cluster I methanogens by a combination of cultivation and molecular techniques
2005
Succession of bacterial community structure and diversity in a paddy soil oxygen gradient
2005
Strain FAc12, a dissimilatory iron-reducing member of the Anaeromyxobacter subgroup of Myxococcales
2003
Identification of major subgroups of ammonia-oxidizing bacteria in environmental samples by T-RFLP analysis of amoA PCR products
2000
Microbiology of flooded rice paddies
2000
Rice Cluster I methanogens, an important group of Archaea producing greenhouse gas in soil
2006
Effects of temperature and fertilizer on activity and community structure of soil ammonia oxidizers
2003
Structure and activity of bacterial community inhabiting rice roots and the rhizosphere
2006
Differential detection of type II methanotrophic bacteria in acidic peatlands using newly developed 16S rRNA-targeted fluorescent oligonucleotide probes
2003
Complete nucleotide sequence of a 23S ribosomal RNA gene fromPirellula marina
1988
Isolation of a Methylocystis strain containing a novel pmoA-like gene
2002
A novel pmoA lineage represented by the acidophilic methanotrophic bacterium Methylocapsa acidophila B2
2001
Potential risks of gene amplification by PCR as determined by 16S rDNA analysis of a mixed-culture of strict barophilic bacteria
1991
Ribosomal RNA and rDNA sequence analyses
1992
Comparative analysis of gene sequences encoding ammonia monooxygenase ofNitrosospirasp. AHB1 andNitrosolobus multiformisC-71
1995
Holophaga foetida gen. nov., sp. nov., a new, homoacetogenic bacterium degrading methoxylated aromatic compounds
1994
Phylogenetic Analysis and In Situ Identification of Bacteria Community Composition in an Acidic Sphagnum Peat Bog
2006
Novel Euryarchaeotal Lineages Detected on Rice Roots and in the Anoxic Bulk Soil of Flooded Rice Microcosms
1998
Diversity and Structure of the Methanogenic Community in Anoxic Rice Paddy Soil Microcosms as Examined by Cultivation and Direct 16S rRNA Gene Sequence Retrieval
1998
Elemental Sulfur and Thiosulfate Disproportionation by Desulfocapsa sulfoexigens sp. nov., a New Anaerobic Bacterium Isolated from Marine Surface Sediment
1998
Novel Bacterial Lineages at the (Sub)Division Level as Detected by Signature Nucleotide-Targeted Recovery of 16S rRNA Genes from Bulk Soil and Rice Roots of Flooded Rice Microcosms
2001
Detection of Methanotroph Diversity on Roots of Submerged Rice Plants by Molecular Retrieval of pmoA , mmoX , mxaF , and 16S rRNA and Ribosomal DNA, Including pmoA - Based Terminal Restriction Fragment Length Polymorphism Profiling
2001
Complete Genome Sequence of the Aerobic Facultative Methanotroph Methylocella silvestris BL2
2010
The Influence of Tachytelically (Rapidly) Evolving Sequences on the Topology of Phylogenetic Trees — Intrafamily Relationships and the Phylogenetic Position of Planctomycetaceae as Revealed by Comparative Analysis of 16S Ribosomal RNA Sequences
1992
Phylogenetic Analysis of Five Strains of Gram-Negative, Obligately Anaerobic, Sulfur-Reducing Bacteria and Description of Desulfuromusa gen. nov., Including Desulfuromusa kysingii sp. nov., Desulfuromusa bakii sp. nov., and Desulfuromusa succinoxidans sp. nov.
1994
Use of the T-RFLP technique to assess spatial and temporal changes in the bacterial community structure within an agricultural soil planted with transgenic and non-transgenic potato plants
2000
Methylocystis heyeri sp. nov., a novel type II methanotrophic bacterium possessing ‘signature’ fatty acids of type I methanotrophs
2007
Evidence for unlinked rrn operons in the Planctomycete Pirellula marina
1989
Disproportionation of inorganic sulfur compounds by the sulfate-reducing bacterium Desulfocapsa thiozymogenes gen. nov., sp. nov.
1996
Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis.
1993
Unculturable microbes detected by molecular sequences and probes
1992
Wide Distribution of a Novel pmoA -Like Gene Copy among Type II Methanotrophs, and Its Expression in Methylocystis Strain SC2
2003
Methylocella palustris gen. nov., sp. nov., a new methane-oxidizing acidophilic bacterium from peat bogs, representing a novel subtype of serine-pathway methanotrophs.
2000
Vertical Distribution of Methanogens in the Anoxic Sediment of Rotsee (Switzerland)
1999
Isolation of Acidophilic Methane-Oxidizing Bacteria from Northern Peat Wetlands
1998 Science
Transcriptional activity of paddy soil bacterial communities
2008
Methylocapsa acidiphila gen. nov., sp. nov., a novel methane-oxidizing and dinitrogen-fixing acidophilic bacterium from Sphagnum bog.
2002
Designation of Streptomycete 16S and 23S rRNA-based target regions for oligonucleotide probes
1991
High-Affinity Methane Oxidation by a Soil Enrichment Culture Containing a Type II Methanotroph
1999
Methanogenic archaea and CO 2 ‐dependent methanogenesis on washed rice roots
1999
Opitutus terrae gen. nov., sp. nov., to accommodate novel strains of the division 'Verrucomicrobia' isolated from rice paddy soil.
2001
Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment
1992
Genome of Rice Cluster I Archaea the Key Methane Producers in the Rice Rhizosphere
2006 Science
Detection and Enumeration of Methanotrophs in Acidic Sphagnum Peat by 16S rRNA Fluorescence In Situ Hybridization, Including the Use of Newly Developed Oligonucleotide Probes for Methylocella palustris
2001
Comparative Phylogenetic Assignment of Environmental Sequences of Genes Encoding 16S rRNA and Numerically Abundant Culturable Bacteria from an Anoxic Rice Paddy Soil
1999
Phylogenetic identity, growth‐response time and rRNA operon copy number of soil bacteria indicate different stages of community succession
2007
Methanocella arvoryzae sp. nov., a hydrogenotrophic methanogen isolated from rice field soil
2010
The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations
1997 Standout
Tetramethylammonium:coenzyme M methyltransferase system from Methanococcoides sp.
1998
Comparative Analysis of the Conventional and Novel pmo (Particulate Methane Monooxygenase) Operons from Methylocystis Strain SC2
2004