Citation Impact
Citing Papers
One thousand plant transcriptomes and the phylogenomics of green plants
2019 StandoutNature
Origin of Antibiotics and Antibiotic Resistance, and Their Impacts on Drug Development: A Narrative Review
2023 Standout
Colonic bacterial composition in Parkinson's disease
2015 Standout
GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes
2020 Standout
Global, regional, and national age–sex specific all-cause and cause-specific mortality for 240 causes of death, 1990–2013: a systematic analysis for the Global Burden of Disease Study 2013
2014 Standout
Evidence for niche adaptation in the genome of the bovine pathogen Streptococcus uberis
2009
GinkgoandWelwitschiaMitogenomes Reveal Extreme Contrasts in Gymnosperm Mitochondrial Evolution
2016
Endosymbiotic origin and differential loss of eukaryotic genes
2015 Nature
Gastrointestinal health and function in weaned pigs: a review of feeding strategies to control post‐weaning diarrhoea without using in‐feed antimicrobial compounds
2012 Standout
Origins of bacterial diversity through horizontal genetic transfer and adaptation to new ecological niches
2011
Swine Flu is Back Again: A Review
2012
An Empirical Codon Model for Protein Sequence Evolution
2007
Revisiting the STEC Testing Approach: Using espK and espV to Make Enterohemorrhagic Escherichia coli (EHEC) Detection More Reliable in Beef
2016 Standout
Experimental bariatric surgery in rats generates a cytotoxic chemical environment in the gut contents
2011
Characterization of antimicrobial resistance and integrons among Escherichia coli isolated from animal farms in Eastern China
2009
Horizontal Gene Transfer from Diverse Bacteria to an Insect Genome Enables a Tripartite Nested Mealybug Symbiosis
2013 Standout
The tree of one percent.
2006
Hallmarks of aging: An expanding universe
2023 Standout
Microbial Malaise: How Can We Classify the Microbiome?
2015
Type I interferons in infectious disease
2015 Standout
Effect of plant extracts and formic acid on the intestinal equilibrium of early-weaned pigs1
2004
Somatic genomic changes in single Alzheimer’s disease neurons
2022 Nature
Genotypes and virulence characteristics of Shiga toxin-producing Escherichia coli O104 strains from different origins and sources
2013
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
2015 Standout
Inferring genomic flux in bacteria
2008
Quality Control of Membraneless Organelles
2018
What is a resistance gene? Ranking risk in resistomes
2014 Standout
Conjugative DNA Transfer Induces the Bacterial SOS Response and Promotes Antibiotic Resistance Development through Integron Activation
2010
Irritable bowel syndrome
2016 Standout
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
2013 Standout
TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy
2019 Standout
The complex microbiota of raw milk
2013 Standout
Considerations and Challenges in Studying Liquid-Liquid Phase Separation and Biomolecular Condensates
2019 Standout
Testing the Infinitely Many Genes Model for the Evolution of the Bacterial Core Genome and Pangenome
2012
Plasmids foster diversification and adaptation of bacterial populations in soil
2012
Use of phytogenic products as feed additives for swine and poultry1
2007 Standout
Horizontal Transfer of DNA from the Mitochondrial to the Plastid Genome and Its Subsequent Evolution in Milkweeds (Apocynaceae)
2013
Environmental factors influencing the development and spread of antibiotic resistance
2017 Standout
Understanding the mechanisms and drivers of antimicrobial resistance
2015 Standout
Horizontal gene transfer in eukaryotic evolution
2008 Standout
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
2018 Standout
progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement
2010 Standout
Small intestinal bacterial overgrowth syndrome
2010
Virus taxonomy: the database of the International Committee on Taxonomy of Viruses (ICTV)
2017 Standout
A systematic comparison of chloroplast genome assembly tools
2020
Dysbiosis of the gut microbiota in disease
2015 Standout
Routine Use of Microbial Whole Genome Sequencing in Diagnostic and Public Health Microbiology
2012
Antibiotic resistance in the environment
2021 Standout
Trends and barriers to lateral gene transfer in prokaryotes
2011
Phylogeny of Bacterial and Archaeal Genomes Using Conserved Genes: Supertrees and Supermatrices
2013
Review of antibiotic resistance in China and its environment
2017 Standout
Regulation of type I interferon responses
2013 Standout
Nutritional management of gut health in pigs around weaning
2007 Standout
The cytochrome bd respiratory oxygen reductases
2011
Serotonin, tryptophan metabolism and the brain-gut-microbiome axis
2014 Standout
Horizontal gene transfer in chromalveolates
2007
An Improved General Amino Acid Replacement Matrix
2008 Standout
Double-Stranded RNA of Intestinal Commensal but Not Pathogenic Bacteria Triggers Production of Protective Interferon-β
2013
Effect of Lactobacillus gasseri SBT2055 in fermented milk on abdominal adiposity in adults in a randomised controlled trial
2013
The Positive Correlation between dN/dS and dS in Mammals Is Due to Runs of Adjacent Substitutions
2010
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff
2012 Standout
Polymyxin B Identified as an Inhibitor of Alternative NADH Dehydrogenase and Malate: Quinone Oxidoreductase from the Gram-positive Bacterium Mycobacterium smegmatis
2009 StandoutNobel
Human health risk assessment of antibiotic resistance associated with antibiotic residues in the environment: A review
2018 Standout
NOVOPlasty: de novo assembly of organelle genomes from whole genome data
2016 Standout
Gut Microbiota in Health and Disease
2010 Standout
Small Intestinal Bacterial Overgrowth and Irritable Bowel Syndrome: A Bridge between Functional Organic Dichotomy
2017
Effects of Probiotics, Prebiotics, and Synbiotics on Human Health
2017 Standout
Role of Gut Microbiota in Early Infant Development
2009
Genetics-Based Classification of Filoviruses Calls for Expanded Sampling of Genomic Sequences
2012
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
2014 Standout
The past, present and future of mitochondrial genomics: have we sequenced enough mtDNAs?
2015
Travel-Related Antimicrobial Resistance: A Systematic Review
2021
Dietary and Policy Priorities for Cardiovascular Disease, Diabetes, and Obesity
2016 Standout
The Front Line of Enteric Host Defense against Unwelcome Intrusion of Harmful Microorganisms: Mucins, Antimicrobial Peptides, and Microbiota
2006
Homologous Recombination in Negative Sense RNA Viruses
2011
Horizontal gene transfer is more frequent with increased heterotrophy and contributes to parasite adaptation
2016
Diverse and abundant antibiotic resistance genes in Chinese swine farms
2013 Standout
Biofilm-Related Infections: Bridging the Gap between Clinical Management and Fundamental Aspects of Recalcitrance toward Antibiotics
2014 Standout
First phylogenetic analysis of the family Neriidae (Diptera), with a study on the issue of scaling continuous characters
2014
Horizontal Transfer of Entire Genomes via Mitochondrial Fusion in the Angiosperm Amborella
2013 Science
The Candidatus Liberibacter–Host Interface: Insights into Pathogenesis Mechanisms and Disease Control
2017 Standout
2016 Standout
Large-scale determination of previously unsolved protein structures using evolutionary information
2015 StandoutNobel
Comparative Genomics of Recent Shiga Toxin-Producing Escherichia coli O104:H4: Short-Term Evolution of an Emerging Pathogen
2013
RDP4: Detection and analysis of recombination patterns in virus genomes
2015 Standout
The Complexity Hypothesis Revisited: Connectivity Rather Than Function Constitutes a Barrier to Horizontal Gene Transfer
2010
Public health evolutionary biology of antimicrobial resistance: priorities for intervention
2014
Works of Weilong Hao being referenced
Novel genetic code and record-setting AT-richness in the highly reduced plastid genome of the holoparasitic plant Balanophora
2018
Rapidly Translated Polypeptides Are Preferred Substrates for Cotranslational Protein Degradation
2016
The fate of laterally transferred genes: Life in the fast lane to adaptation or death
2006
Gene Gain and Gene Loss in Streptococcus: Is It Driven by Habitat?
2006
Patterns of Bacterial Gene Movement
2004
Escherichia coliO104:H4 Infections and International Travel
2012
High rates of lateral gene transfer are not due to false diagnosis of gene absence
2008
The role of laterally transferred genes in adaptive evolution
2007
Human Fecal Water Modifies Adhesion of Intestinal Bacteria to Caco-2 Cells
2005
Microflora of the Gastrointestinal Tract: A Review
2004
Asymmetrical Evolution of Cytochrome bd Subunits
2006
Horizontal acquisition of multiple mitochondrial genes from a parasitic plant followed by gene conversion with host mitochondrial genes
2010
Evidence of intra-segmental homologous recombination in influenza A virus
2011
Identification of conflicting selective effects on highly expressed genes.
2007
Strand-biased cytosine deamination at the replication fork causes cytosine to thymine mutations in Escherichia coli
2016
Does Gene Translocation Accelerate the Evolution of Laterally Transferred Genes?
2009
Uncovering rate variation of lateral gene transfer during bacterial genome evolution
2008
Gorgeous mosaic of mitochondrial genes created by horizontal transfer and gene conversion
2010
Horizontal Transfer and Gene Conversion as an Important Driving Force in Shaping the Landscape of Mitochondrial Introns
2014
HGT turbulence
2011
Identification of Conflicting Selective Effects on Highly Expressed Genes
2007
Fine-scale mergers of chloroplast and mitochondrial genes create functional, transcompartmentally chimeric mitochondrial genes
2009