Citation Impact
Citing Papers
rMATS: Robust and flexible detection of differential alternative splicing from replicate RNA-Seq data
2014 Standout
Exact sequence variants should replace operational taxonomic units in marker-gene data analysis
2017 Standout
Polymorphism-Aware Species Trees with Advanced Mutation Models, Bootstrap, and Rate Heterogeneity
2019
IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
2020 Standout
High burden and pervasive positive selection of somatic mutations in normal human skin
2015 StandoutScience
Environmental impact assessment in Brazilian Amazonia: Challenges and prospects to assess biodiversity
2017
GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes
2020 Standout
A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakes
2013 Standout
An integrated map of genetic variation from 1,092 human genomes
2012 StandoutNature
Characterization of soil nematode communities in three cropping systems through morphological and DNA metabarcoding approaches
2018
Discovery of archaeal fusexins homologous to eukaryotic HAP2/GCS1 gamete fusion proteins
2022 StandoutNobel
GinkgoandWelwitschiaMitogenomes Reveal Extreme Contrasts in Gymnosperm Mitochondrial Evolution
2016
Embracing the unknown: disentangling the complexities of the soil microbiome
2017 Standout
Towards next‐generation biodiversity assessment using DNA metabarcoding
2012
Formal description of sequence-based voucherless Fungi: promises and pitfalls, and how to resolve them
2018
To name or not to name: Criteria to promote economy of change in Linnaean classification schemes
2013
Whole-Genome and Chromosome Evolution Associated with Host Adaptation and Speciation of the Wheat Pathogen Mycosphaerella graminicola
2010
Nano-based smart pesticide formulations: Emerging opportunities for agriculture
2018 Standout
Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq
2012 StandoutNature
De novo assembly and genotyping of variants using colored de Bruijn graphs
2012
Agricultural expansion and its impacts on tropical nature
2014 Standout
Increased fidelity of protein synthesis extends lifespan
2021
Plant–microbiome interactions: from community assembly to plant health
2020 Standout
Non‐random mutation: The evolution of targeted hypermutation and hypomutation
2012
Protein Insertions and Deletions Enabled by Neutral Roaming in Sequence Space
2013
Hallmarks of aging: An expanding universe
2023 Standout
Exploiting and engineering hemoproteins for abiological carbene and nitrene transfer reactions
2017 StandoutNobel
jMOTU and Taxonerator: Turning DNA Barcode Sequences into Annotated Operational Taxonomic Units
2011
Sequencing our way towards understanding global eukaryotic biodiversity
2012
Damming the rivers of the Amazon basin
2017 StandoutNature
The life and death of gene families
2009
High Spontaneous Rate of Gene Duplication in Caenorhabditis elegans
2011
A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System
2013 Standout
An Evolutionarily Conserved Prion-like Element Converts Wild Fungi from Metabolic Specialists to Generalists
2014
Pathogenic Mechanisms of Somatic Mutation and Genome Mosaicism in Aging
2020
Interferons and viruses: an evolutionary arms race of molecular interactions
2015 StandoutNobel
Beyond genome sequencing: Lineage tracking with barcodes to study the dynamics of evolution, infection, and cancer
2014
The causes and consequences of genetic heterogeneity in cancer evolution
2013 StandoutNature
Genome-wide analysis of retrogene polymorphisms in Drosophila melanogaster
2011
Argonaute CLIP Defines a Deregulated miR-122-Bound Transcriptome that Correlates with Patient Survival in Human Liver Cancer
2017 StandoutNobel
Harnessing genomics for evolutionary insights
2009
Direct mutation analysis by high-throughput sequencing: From germline to low-abundant, somatic variants
2011
Evidence for genetic differentiation and variable recombination rates among Dutch populations of the opportunistic human pathogen Aspergillus fumigatus
2011
Near-optimal probabilistic RNA-seq quantification
2016 Standout
Soup to Tree: The Phylogeny of Beetles Inferred by Mitochondrial Metagenomics of a Bornean Rainforest Sample
2015
Mutations in adenine-binding pockets enhance catalytic properties of NAD(P)H-dependent enzymes
2015 StandoutNobel
The Top 10 fungal pathogens in molecular plant pathology
2012 Standout
Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows
2010 Standout
Biology and Applications of CRISPR Systems: Harnessing Nature’s Toolbox for Genome Engineering
2016 StandoutNobel
Long livestock farming history and human landscape shaping revealed by lake sediment DNA
2014 Standout
Next‐generation sequencing technologies for environmental DNA research
2012
The Hallmarks of Aging
2013 Standout
Dramatic Shifts in Benthic Microbial Eukaryote Communities following the Deepwater Horizon Oil Spill
2012
Concepts of the last eukaryotic common ancestor
2019
Whole genome sequencing for quantifying germline mutation frequency in humans and model species: Cautious optimism
2011
Emerging fungal threats to animal, plant and ecosystem health
2012 StandoutNature
Evolution of the mutation rate
2010
What we know and don’t know about Earth's missing biodiversity
2012
Evolutionary history of Coleoptera revealed by extensive sampling of genes and species
2018 Standout
Groundtruthing Next-Gen Sequencing for Microbial Ecology–Biases and Errors in Community Structure Estimates from PCR Amplicon Pyrosequencing
2012
Experimental evolution
2012
Estimating Gene Gain and Loss Rates in the Presence of Error in Genome Assembly and Annotation Using CAFE 3
2013 Standout
Genome dynamics during experimental evolution
2013
Environmental effects of the Deepwater Horizon oil spill: A review
2016 Standout
Genome-Wide Mutation Avalanches Induced in Diploid Yeast Cells by a Base Analog or an APOBEC Deaminase
2013
Belowground biodiversity and ecosystem functioning
2014 StandoutNature
Genome-Based Taxonomic Classification of the Phylum Actinobacteria
2018 Standout
Alternative splicing and evolution: diversification, exon definition and function
2010
Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring
2012
FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild
2015 Standout
Structure of a designed tetrahedral protein assembly variant engineered to have improved soluble expression
2015 StandoutNobel
Overcoming an optimization plateau in the directed evolution of highly efficient nerve agent bioscavengers
2017 StandoutNobel
Tree diversity and species identity effects on soil fungi, protists and animals are context dependent
2015
Synthetic biology for the directed evolution of protein biocatalysts: navigating sequence space intelligently
2014
Evolutionary meandering of intermolecular interactions along the drift barrier
2014
Rate, molecular spectrum, and consequences of human mutation
2010
ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis
2011
Molecular study of worldwide distribution and diversity of soil animals
2011
Biogeographic patterns in below-ground diversity in New York City's Central Park are similar to those observed globally
2014
Targeted nucleotide editing using hybrid prokaryotic and vertebrate adaptive immune systems
2016 StandoutScience
Chemical language and warfare of bacterial natural products in bacteria–nematode–insect interactions
2018
The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications
2018 Standout
The Chemistry of Reactive Oxygen Species (ROS) Revisited: Outlining Their Role in Biological Macromolecules (DNA, Lipids and Proteins) and Induced Pathologies
2021 Standout
How Many Species of Insects and Other Terrestrial Arthropods Are There on Earth?
2017 Standout
Open-Source Sequence Clustering Methods Improve the State Of the Art
2016
Cofactor specificity motifs and the induced fit mechanism in class I ketol-acid reductoisomerases
2015 StandoutNobel
DNA Barcoding of Marine Metazoa
2010
The biodiversity of species and their rates of extinction, distribution, and protection
2014 StandoutScience
Physicochemical Foundations of Life that Direct Evolution: Chance and Natural Selection are not Evolutionary Driving Forces
2020
Cancer Genome Landscapes
2013 StandoutScience
Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton
2015 Standout
Stochastic Community Assembly: Does It Matter in Microbial Ecology?
2017 Standout
Defaunation in the Anthropocene
2014 StandoutScience
A general species delimitation method with applications to phylogenetic placements
2013 Standout
Emerging Droplet Microfluidics
2017 Standout
Increasing human dominance of tropical forests
2015 StandoutScience
The ERI-6/7 Helicase Acts at the First Stage of an siRNA Amplification Pathway That Targets Recent Gene Duplications
2011 StandoutNobel
Works of Way Sung being referenced
A genome-wide view of the spectrum of spontaneous mutations in yeast
2008
Extensive, Recent Intron Gains in Daphnia Populations
2009 Science
A genome-wide view of Caenorhabditis elegans base-substitution mutation processes
2009
Second-generation environmental sequencing unmasks marine metazoan biodiversity
2010
Ultrasequencing of the meiofaunal biosphere: practice, pitfalls and promises
2010
Genetic drift, selection and the evolution of the mutation rate
2016
Metagenetic community analysis of microbial eukaryotes illuminates biogeographic patterns in deep‐sea and shallow water sediments
2011
Evaluating high‐throughput sequencing as a method for metagenomic analysis of nematode diversity
2009
Evolutionary determinants of genome-wide nucleotide composition
2017
Intra-Genomic Variation in the Ribosomal Repeats of Nematodes
2013
Reproducibility of read numbers in high‐throughput sequencing analysis of nematode community composition and structure
2009
Ecometagenetics confirm high tropical rainforest nematode diversity
2010
Drift-barrier hypothesis and mutation-rate evolution
2012
Linking operational clustered taxonomic units (OCTUs) from parallel ultra sequencing (PUS) to nematode species
2010
The nature and frequency of chimeras in eukaryotic metagenetic samples.
2012