Citation Impact
Citing Papers
Causes and Effects of N-Terminal Codon Bias in Bacterial Genes
2013 Science
Silencing of Repetitive DNA Is Controlled by a Member of an Unusual Caenorhabditis elegans Gene Family
2017
RepeatModeler2 for automated genomic discovery of transposable element families
2020 Standout
Caenorhabditis elegans ADAR editing and the ERI-6/7/MOV10 RNAi pathway silence endogenous viral elements and LTR retrotransposons
2020 StandoutNobel
Use of Nucleotide Composition Analysis To Infer Hosts for Three Novel Picorna-Like Viruses
2010
One thousand plant transcriptomes and the phylogenomics of green plants
2019 StandoutNature
Using bioinformatic and phylogenetic approaches to classify transposable elements and understand their complex evolutionary histories
2017
Phylogenomic analyses support the position of turtles as the sister group of birds and crocodiles (Archosauria)
2012
Origins and evolution of viruses of eukaryotes: The ultimate modularity
2015
Mitochondrial genomes of acrodont lizards: timing of gene rearrangements and phylogenetic and biogeographic implications
2010
Integrated “omics” profiling indicates that miRNAs are modulators of the ontogenetic venom composition shift in the Central American rattlesnake, Crotalus simus simus
2013
A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakes
2013 Standout
Live cell imaging of low- and non-repetitive chromosome loci using CRISPR-Cas9
2017
Function and evolution of local repeats in the Firre locus
2016
lincRNAs: Genomics, Evolution, and Mechanisms
2013 Standout
Tracing the Origins of Iguanid Lizards and Boine Snakes of the Pacific
2009
The Position of Gnetales among Seed Plants: Overcoming Pitfalls of Chloroplast Phylogenomics
2010
Codon-usage-based inhibition of HIV protein synthesis by human schlafen 11
2012 Nature
Regulation of microRNA function in animals
2018 Standout
The Biogenesis, Functions, and Challenges of Circular RNAs
2018 Standout
PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses
2016 Standout
Primer3—new capabilities and interfaces
2012 Standout
DHX9 suppresses RNA processing defects originating from the Alu invasion of the human genome
2017 Nature
A new coronavirus associated with human respiratory disease in China
2020 StandoutNature
Naturally existing isoforms of miR-222 have distinct functions
2017
The Human Transcription Factors
2018 Standout
Inferring the hosts of coronavirus using dual statistical models based on nucleotide composition
2015
TRIBE: Hijacking an RNA-Editing Enzyme to Identify Cell-Specific Targets of RNA-Binding Proteins
2016 StandoutNobel
Snakebite envenoming
2017 Standout
Evolution at two levels of gene expression in yeast
2013
A survey of transposable element classification systems – A call for a fundamental update to meet the challenge of their diversity and complexity
2015
Antiviral resistance of stem cells
2018 StandoutNobel
Transposable Elements Are Major Contributors to the Origin, Diversification, and Regulation of Vertebrate Long Noncoding RNAs
2013
Mitochondrial dysfunction induces RNA interference in C. elegans through a pathway homologous to the mammalian RIG-I antiviral response
2020 StandoutNobel
Chromosome-scale shotgun assembly using an in vitro method for long-range linkage
2016
A pause for thought along the co-translational folding pathway
2008
Pausing on Polyribosomes: Make Way for Elongation in Translational Control
2015
Contentious relationships in phylogenomic studies can be driven by a handful of genes
2017
Biodistribution and function of extracellular miRNA-155 in mice
2015 StandoutNobel
Universally increased mRNA stability downstream of the translation initiation site in eukaryotes and prokaryotes
2013
Overview of MicroRNA Biogenesis, Mechanisms of Actions, and Circulation
2018 Standout
Long non-coding RNAs: new players in cell differentiation and development
2013 Standout
Recombinant protein expression in Escherichia coli: advances and challenges
2014 Standout
Genomic era analyses of RNA secondary structure and RNA-binding proteins reveal their significance to post-transcriptional regulation in plants
2013
An efficient and sensitive method for preparing cDNA libraries from scarce biological samples
2014 StandoutNobel
To translate, or not to translate: viral and host mRNA regulation by interferon-stimulated genes
2015 StandoutNobel
Atlas of Subcellular RNA Localization Revealed by APEX-Seq
2019
Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices
2016 Standout
On the Dependency of Cellular Protein Levels on mRNA Abundance
2016 Standout
ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees
2018 Standout
Insights into RNA structure and function from genome-wide studies
2014 StandoutNobel
Virus taxonomy: the database of the International Committee on Taxonomy of Viruses (ICTV)
2017 Standout
Drawing a fine line on endogenous retroelement activity
2015
Unique features of long non-coding RNA biogenesis and function
2015 Standout
Statistics and Truth in Phylogenomics
2011
Coming of age: ten years of next-generation sequencing technologies
2016 Standout
The biogenesis, biology and characterization of circular RNAs
2019 Standout
Insights into the regulation of protein abundance from proteomic and transcriptomic analyses
2012 Standout
Implementing and testing the multispecies coalescent model: A valuable paradigm for phylogenomics
2015
Loss of transcriptional control over endogenous retroelements during reprogramming to pluripotency
2014
Realistic artificial DNA sequences as negative controls for computational genomics
2014
Mining museums for historical DNA: advances and challenges in museomics
2021 Standout
RNA Interactions Are Essential for CTCF-Mediated Genome Organization
2019
metaSPAdes: a new versatile metagenomic assembler
2017 Standout
Illumina TruSeq Synthetic Long-Reads Empower De Novo Assembly and Resolve Complex, Highly-Repetitive Transposable Elements
2014
Global quantification of mammalian gene expression control
2011 StandoutNature
Genome Composition and Divergence of the Novel Coronavirus (2019-nCoV) Originating in China
2020 Standout
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
2014 Standout
MOV10 RNA Helicase Is a Potent Inhibitor of Retrotransposition in Cells
2012
Considering Transposable Element Diversification in De Novo Annotation Approaches
2011
Gene regulation by long non-coding RNAs and its biological functions
2020 Standout
Small RNAs are modified with N-glycans and displayed on the surface of living cells
2021 StandoutNobel
The macrosatellite DXZ4 mediates CTCF-dependent long-range intrachromosomal interactions on the human inactive X chromosome
2012
A call for benchmarking transposable element annotation methods
2015
Strong association between mRNA folding strength and protein abundance in S. cerevisiae
2012
Minimap2: pairwise alignment for nucleotide sequences
2018 Standout
Characterization of the virulence of a non-RT027, non-RT078 and binary toxin-positive Clostridium difficile strain associated with severe diarrhea
2018
Regulatory Impact of RNA Secondary Structure across the Arabidopsis Transcriptome
2012
Serology-Enabled Discovery of Genetically Diverse Hepaciviruses in a New Host
2012 StandoutNobel
Comprehensive profiling of circulating microRNA via small RNA sequencing of cDNA libraries reveals biomarker potential and limitations
2013
Mobile Genetic Elements Associated with Antimicrobial Resistance
2018 Standout
Transposable elements reveal a stem cell-specific class of long noncoding RNAs
2012
LAMSA: fast split read alignment with long approximate matches
2016
De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds
2017 StandoutScience
Genomes in Focus: Development and Applications of CRISPR‐Cas9 Imaging Technologies
2017 StandoutNobel
Efficient translation initiation dictates codon usage at gene start
2013
Sequence signatures and mRNA concentration can explain two‐thirds of protein abundance variation in a human cell line
2010
The genome sequence of the colonial chordate, Botryllus schlosseri
2013
Integrating natural history collections and comparative genomics to study the genetic architecture of convergent evolution
2019
Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy
2017
Identification of Rodent Homologs of Hepatitis C Virus and Pegiviruses
2013 StandoutNobel
Insect Mitochondrial Genomics: Implications for Evolution and Phylogeny
2013 Standout
Long Noncoding RNAs: Past, Present, and Future
2013 Standout
QDD: a user-friendly program to select microsatellite markers and design primers from large sequencing projects
2009
CRISPR-Cas guides the future of genetic engineering
2018 StandoutScienceNobel
MicroRNAs in Human Placental Development and Pregnancy Complications
2013
KRAB zinc finger proteins
2017
Tunable protein synthesis by transcript isoforms in human cells
2016 StandoutNobel
ASTRAL: genome-scale coalescent-based species tree estimation
2014 Standout
Who Speaks with a Forked Tongue?
2012 Science
Extracellular microRNAs in human circulation are associated with miRISC complexes that are accessible to anti-AGO2 antibody and can bind target mimic oligonucleotides
2020 StandoutNobel
Ecdysozoan Mitogenomics: Evidence for a Common Origin of the Legged Invertebrates, the Panarthropoda
2010
Works of Wanjun Gu being referenced
The relationship between synonymous codon usage and protein structure in Escherichia coli and Homo sapiens
2004
Detecting Positive and Purifying Selection at Synonymous Sites in Yeast and Worm
2010
Analysis of synonymous codon usage in SARS Coronavirus and other viruses in the Nidovirales
2004
A Comprehensive Survey of miRNA Repertoire and 3′ Addition Events in the Placentas of Patients with Pre-Eclampsia from High-Throughput Sequencing
2011
Identification of repeat structure in large genomes using repeat probability clouds
2008
Analysis of synonymous codon usage in H5N1 virus and other influenza A viruses
2005
Repetitive Elements May Comprise Over Two-Thirds of the Human Genome
2011
Rapid identification of thousands of copperhead snake (Agkistrodon contortrix) microsatellite loci from modest amounts of 454 shotgun genome sequence
2009
A Universal Trend of Reduced mRNA Stability near the Translation-Initiation Site in Prokaryotes and Eukaryotes
2010
Selection on Synonymous Sites for Increased Accessibility around miRNA Binding Sites in Plants
2012
Discovery of Highly Divergent Repeat Landscapes in Snake Genomes Using High-Throughput Sequencing
2011
Genome Sequence and Analysis of Peptoclostridium difficile Strain ZJCDC-S82
2016
Evidence for an ancient adaptive episode of convergent molecular evolution
2009