Standout Papers
Citation Impact
Citing Papers
NCBI Taxonomy: a comprehensive update on curation, resources and tools
2020 Standout
Evolutionary and geographical history of the Leishmania donovani complex with a revision of current taxonomy
2007
The glycolytic pathway of Trimastix pyriformis is an evolutionary mosaic.
2006
A genomic survey of the fish parasite Spironucleus salmonicida indicates genomic plasticity among diplomonads and significant lateral gene transfer in eukaryote genome evolution
2007
Genetic manipulation of Patescibacteria provides mechanistic insights into microbial dark matter and the epibiotic lifestyle
2023 StandoutNobel
The evolution of the plastid chromosome in land plants: gene content, gene order, gene function
2011 Standout
Algae as nutritional and functional food sources: revisiting our understanding
2016 Standout
BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments
2010
The New Tree of Eukaryotes
2019
The COG database: an updated version includes eukaryotes
2003 Standout
Hypoxia and intra-complex genetic suppressors rescue complex I mutants by a shared mechanism
2024 StandoutNobel
Antibacterial Activity of Phenolic Compounds Against the Phytopathogen Xylella fastidiosa
2009 Standout
Repbase Update, a database of repetitive elements in eukaryotic genomes
2015 Standout
Discovery of archaeal fusexins homologous to eukaryotic HAP2/GCS1 gamete fusion proteins
2022 StandoutNobel
Evolution of four gene families with patchy phylogenetic distributions: influx of genes into protist genomes
2006
Hedgehog: functions and mechanisms
2008 Standout
Endosymbiotic origin and differential loss of eukaryotic genes
2015 Nature
Effects of N-glycan precursor length diversity on quality control of protein folding and on protein glycosylation
2014
Biological control of soil-borne pathogens by fluorescent pseudomonads
2005 Standout
Visceral leishmaniasis: what are the needs for diagnosis, treatment and control?
2007 Standout
Giardia Sex? Yes, but how and how much?
2009
Human schistosomiasis
2006 Standout
Reading the entrails of chickens: molecular timescales of evolution and the illusion of precision
2003 Standout
A review of long‐branch attraction
2005
Horizontal Gene Transfer from Diverse Bacteria to an Insect Genome Enables a Tripartite Nested Mealybug Symbiosis
2013 Standout
Marine natural products
1990 Standout
Lateral transfer of the gene for a widely used marker, α-tubulin, indicated by a multi-protein study of the phylogenetic position of Andalucia (Excavata)
2007
The phylogeny of the Schistosomatidae based on three genes with emphasis on the interrelationships of Schistosoma Weinland, 1858
2003
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
2015 Standout
Evidence of plasmotomy in Blastocystis hominis
2007
Imatinib Treatment Causes Substantial Transcriptional Changes in Adult Schistosoma mansoni In Vitro Exhibiting Pleiotropic Effects
2014
The RAB Family GTPase Rab1A from Plasmodium falciparum Defines a Unique Paralog Shared by Chromalveolates and Rhizaria
2009
Molluscan and vertebrate immune responses to bird schistosomes
2005
Mitochondria: In Sickness and in Health
2012 Standout
Biological roles of glycans
2016 Standout
Multiple origins of endosymbiosis within the Enterobacteriaceae (γ-Proteobacteria): convergence of complex phylogenetic approaches
2011
Schistosomiasis
2018 Standout
The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis
2005 Standout
Algal chemodiversity and bioactivity: Sources of natural variability and implications for commercial application
2011
Horizontal gene transfer in eukaryotic evolution
2008 Standout
Colletotrichum gloeosporioidess.l. associated withTheobroma cacaoand other plants in Panamá: multilocus phylogenies distinguish host-associated pathogens from asymptomatic endophytes
2010 Standout
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
2018 Standout
The origin and evolution of model organisms
2002
Application of Phylogenetic Networks in Evolutionary Studies
2005 Standout
Learning how to live together: genomic insights into prokaryote–animal symbioses
2008 Standout
An Overexpression Screen of Toxoplasma gondii Rab-GTPases Reveals Distinct Transport Routes to the Micronemes
2013 StandoutNobel
The Origin and Diversification of Mitochondria
2017
Global eukaryote phylogeny: Combined small- and large-subunit ribosomal DNA trees support monophyly of Rhizaria, Retaria and Excavata
2006
The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks
2013 Standout
Phylogeny and classification of the Digenea (Platyhelminthes: Trematoda)11Nucleotide sequence data reported in this paper are available in the GenBank™, EMBL and DDBJ databases under the accession numbers AY222082–AY222285.
2003 Standout
Horizontal gene transfer in chromalveolates
2007
Concepts of the last eukaryotic common ancestor
2019
The major clades of Loasaceae: phylogenetic analysis using the plastid matK and trnL‐trnF regions
2003
Phylogenetic Analyses of Diplomonad Genes Reveal Frequent Lateral Gene Transfers Affecting Eukaryotes
2003
Telling the whole story in a 10,000-genome world
2011
Chapter 2 Predicting Proteomes of Mitochondria and Related Organelles from Genomic and Expressed Sequence Tag Data
2009
Polymyxin B Identified as an Inhibitor of Alternative NADH Dehydrogenase and Malate: Quinone Oxidoreductase from the Gram-positive Bacterium Mycobacterium smegmatis
2009 StandoutNobel
A Phylogenomic Inventory of Meiotic Genes
2005
Rab protein evolution and the history of the eukaryotic endomembrane system
2010
Zoonotic Potential and Molecular Epidemiology ofGiardiaSpecies and Giardiasis
2011 Standout
An Empirical Assessment of Long-Branch Attraction Artefacts in Deep Eukaryotic Phylogenomics
2005
The endosymbiotic origin, diversification and fate of plastids
2010
Drosophila chibby is required for basal body formation and ciliogenesis but not for Wg signaling
2012
Evolution and Diversity of Plant Cell Walls: From Algae to Flowering Plants
2011
Sexually Transmitted Infections Treatment Guidelines, 2021
2021 Standout
The Cambrian Conundrum: Early Divergence and Later Ecological Success in the Early History of Animals
2011 StandoutScience
Eukaryotic Fe-hydrogenases – old eukaryotic heritage or adaptive acquisitions?
2005
New Insights on Classification, Identification, and Clinical Relevance ofBlastocystisspp
2008 Standout
Sexually Transmitted Diseases Treatment Guidelines, 2010
2011 Standout
The Neotropical Leishmania species: a brief historical review of their discovery, ecology and taxonomy
2010 Standout
Occurrence, Classification, and Biological Function of Hydrogenases: An Overview
2007 Standout
BiologicalTraits ofXylella fastidiosaStrains from Grapes andAlmonds
2003
The origin and diversification of eukaryotes: problems with molecular phylogenetics and molecular clock estimation
2006
Computational Molecular Evolution
2006 Standout
Biochemistry and Evolution of Anaerobic Energy Metabolism in Eukaryotes
2012
The Caenorhabditis elegans ARIP-4 DNA helicase couples mitochondrial surveillance to immune, detoxification, and antiviral pathways
2022 StandoutNobel
Evaluating Support for the Current Classification of Eukaryotic Diversity
2006
Biosynthesis and Molecular Genetics of Polyketides in Marine Dinoflagellates
2010
The case for a Neoproterozoic Oxygenation Event: Geochemical evidence and biological consequences
2011
Sulfur Assimilation in Photosynthetic Organisms: Molecular Functions and Regulations of Transporters and Assimilatory Enzymes
2011 Standout
The catalytic domain of all eukaryotic cut-and-paste transposase superfamilies
2011
Pyruvate-Phosphate Dikinase of Oxymonads and Parabasalia and the Evolution of Pyrophosphate-Dependent Glycolysis in Anaerobic Eukaryotes
2006
Frequency, Diversity, and Activity of 2,4-Diacetylphloroglucinol-Producing Fluorescent Pseudomonas spp. in Dutch Take-all Decline Soils
2003
Cby1 promotes Ahi1 recruitment to a ring-shaped domain at the centriole–cilium interface and facilitates proper cilium formation and function
2014 StandoutNobel
Origin and Early Evolution of the Eukaryotic Cell
2021
Development of PCR Assays for Detection of Trichomonas vaginalis in Urine Specimens
2013
Phylogeny in cryptic weevils: molecules, morphology and new genera of western Palaearctic Cryptorhynchinae (Coleoptera : Curculionidae)
2008 Standout
Works of Vladimı́r Hampl being referenced
Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic “supergroups”
2009 Standout
Aerobic mitochondria of parasitic protists: Diverse genomes and complex functions
2016
New evolutionary lineages, unexpected diversity, and host specificity in the parabasalid genus Tetratrichomonas
2006
Was the Mitochondrion Necessary to Start Eukaryogenesis?
2018
Genetic Evidence for a Mitochondriate Ancestry in the ‘Amitochondriate’ Flagellate Trimastix pyriformis
2008
Critical analysis of the topology and rooting of the parabasalian 16S rRNA tree
2004
Chapter 4 Peptidases of Trematodes
2009
Phylogenetic position of Protoopalina intestinalis based on SSU rRNA gene sequence
2004
Construction and bootstrap analysis of DNA fingerprinting-based phylogenetic trees with the freeware program FreeTree: application to trichomonad parasites.
2001
Eukaryotic Pyruvate Formate Lyase and Its Activating Enzyme Were Acquired Laterally from a Firmicute
2011
Comparison of European Trichobilharzia species based on ITS1 and ITS2 sequences
2002
A Eukaryote without a Mitochondrial Organelle
2016
Hydrogenosome-localization of arginine deiminase in Trichomonas vaginalis
2010
Inference of the Phylogenetic Position of Oxymonads Based on Nine Genes: Support for Metamonada and Excavata
2005
Retortamonad Flagellates are Closely Related to Diplomonads—Implications for the History of Mitochondrial Function in Eukaryote Evolution
2002
Validity reassessment of Trichobilharzia species using Lymnaea stagnalis as the intermediate host
2004
The phylogenetic position of enteromonads: a challenge for the present models of diplomonad evolution
2005
Reconstructing the Mosaic Glycolytic Pathway of the Anaerobic Eukaryote Monocercomonoides
2006