Citation Impact
Citing Papers
Protein interaction networks revealed by proteome coevolution
2019 StandoutScienceNobel
The Drosophila embryo at single-cell transcriptome resolution
2017 Science
Limits of long-term selection against Neandertal introgression
2019 StandoutNobel
KEGG for taxonomy-based analysis of pathways and genomes
2022 Standout
WGCNA: an R package for weighted correlation network analysis
2008 Standout
Genome-wide features of neuroendocrine regulation in Drosophila by the basic helix-loop-helix transcription factor DIMMED
2015 StandoutNobel
Metascape provides a biologist-oriented resource for the analysis of systems-level datasets
2019 Standout
OrthoClusterDB: an online platform for synteny blocks
2009
TreeFam: 2008 Update
2007
HMMER web server: interactive sequence similarity searching
2011 Standout
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
2015 Standout
Phase separation drives heterochromatin domain formation
2017 Nature
The Pfam Protein Families Database
2002 Standout
Primer3—new capabilities and interfaces
2012 Standout
Genome-wide analysis of Notch signalling in Drosophila by transgenic RNAi
2009 Nature
Pfam: the protein families database
2013 Standout
Deep experimental profiling of microRNA diversity, deployment, and evolution across the Drosophila genus
2017
ChEMBL: a large-scale bioactivity database for drug discovery
2011 Standout
Predicting microRNA targeting efficacy in Drosophila
2018
Akirins are highly conserved nuclear proteins required for NF-κB-dependent gene expression in drosophila and mice
2007 StandoutNobel
MicroRNAs: Target Recognition and Regulatory Functions
2009 Standout
Database resources of the National Center for Biotechnology Information: update
2003 Standout
RNAcentral: a hub of information for non-coding RNA sequences
2018
Deciphering key features in protein structures with the new ENDscript server
2014 Standout
FlyBase: enhancing Drosophila Gene Ontology annotations
2008
FMRP Stalls Ribosomal Translocation on mRNAs Linked to Synaptic Function and Autism
2011 Standout
Considerations and Challenges in Studying Liquid-Liquid Phase Separation and Biomolecular Condensates
2019 Standout
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003
2003 Standout
Metazoan MicroRNAs
2018 Standout
VisANT: an integrative framework for networks in systems biology
2008
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
2013 Standout
Molecular chaperones in protein folding and proteostasis
2011 StandoutNature
MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
2012 Standout
PubChem Substance and Compound databases
2015 Standout
NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
2006 Standout
Quantitative Proteomics by Metabolic Labeling of Model Organisms
2009
Supervised machine learning reveals introgressed loci in the genomes of Drosophila simulans and D. sechellia
2018
Insights into RNA structure and function from genome-wide studies
2014 StandoutNobel
Fast and sensitive protein alignment using DIAMOND
2014 Standout
Light-Mediated TIM Degradation within Drosophila Pacemaker Neurons (s-LNvs) Is Neither Necessary nor Sufficient for Delay Zone Phase Shifts
2010 StandoutNobel
A Gene Wiki for Community Annotation of Gene Function
2008
Drosophila Tempura, a Novel Protein Prenyltransferase α Subunit, Regulates Notch Signaling Via Rab1 and Rab11
2014
Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
2007
Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
2008 StandoutNature
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored
2010 Standout
Intrinsic Protein Disorder and Interaction Promiscuity Are Widely Associated with Dosage Sensitivity
2009
The Pfam protein families database
2011 Standout
UPARSE: highly accurate OTU sequences from microbial amplicon reads
2013 Standout
Global quantification of mammalian gene expression control
2011 StandoutNature
Comprehensive Integration of Single-Cell Data
2019 Standout
Single-cell transcriptomic analysis of Alzheimer’s disease
2019 StandoutNature
Phytozome: a comparative platform for green plant genomics
2011 Standout
Ribosomal Database Project: data and tools for high throughput rRNA analysis
2013 Standout
Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy
2007 Standout
The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling
2005 Standout
The EMBL-EBI search and sequence analysis tools APIs in 2019
2019 Standout
Ramshackle (Brwd3) promotes light-induced ubiquitylation of Drosophila Cryptochrome by DDB1-CUL4-ROC1 E3 ligase complex
2013 StandoutNobel
SIFT: predicting amino acid changes that affect protein function
2003 Standout
Microbial diversity in the deep sea and the underexplored “rare biosphere”
2006 Standout
Classification of Intrinsically Disordered Regions and Proteins
2014 Standout
The Blue-Light Photoreceptor CRYPTOCHROME Is Expressed in a Subset of Circadian Oscillator Neurons in the Drosophila CNS
2008
TLRs and innate immunity
2008 StandoutNobel
PubChem in 2021: new data content and improved web interfaces
2020 Standout
The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets
2020 Standout
The BioGRID interaction database: 2019 update
2018
Targeted Investigation of the Neandertal Genome by Array-Based Sequence Capture
2010 StandoutScienceNobel
Immunopurification of Ago1 miRNPs selects for a distinct class of microRNA targets
2009 StandoutNobel
Liquid phase condensation in cell physiology and disease
2017 StandoutScience
Works of Victor Strelets being referenced
FlyBase: genomes by the dozen
2006
FlyBase: improvements to the bibliography
2012
FlyBase at 25: looking to the future
2016
FlyBase: integration and improvements to query tools
2007
FlyBase: introduction of the Drosophila melanogaster Release 6 reference genome assembly and large-scale migration of genome annotations
2014