Citation Impact
Citing Papers
Origins of coevolution between residues distant in protein 3D structures
2017 StandoutNobel
Improved de novo structure prediction in CASP 11 by incorporating coevolution information into Rosetta
2015 StandoutNobel
Protein structure determination using metagenome sequence data
2017 StandoutScienceNobel
Interpreting Potts and Transformer Protein Models Through the Lens of Simplified Attention
2021 StandoutNobel
Assessing the utility of coevolution-based residue–residue contact predictions in a sequence- and structure-rich era
2013 StandoutNobel
The gut microbiota and host health: a new clinical frontier
2015 Standout
Protein oligomer modeling guided by predicted interchain contacts in CASP14
2021 StandoutNobel
Continual lifelong learning with neural networks: A review
2019 Standout
Clinical-grade computational pathology using weakly supervised deep learning on whole slide images
2019 Standout
A machine learning-based risk stratification model for ventricular tachycardia and heart failure in hypertrophic cardiomyopathy
2021
Text Data Augmentation for Deep Learning
2021 Standout
Integrative analysis of the microbiome and metabolome of the human intestinal mucosal surface reveals exquisite inter-relationships
2013
Computational Pathology: A Path Ahead
2015
Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible
2014 Standout
Protein structure prediction on the Web: a case study using the Phyre server
2009 Standout
Gut microbiota functions: metabolism of nutrients and other food components
2017 Standout
Current state and future directions of neurochemical biomarkers for Alzheimer's disease
2007
Neurofilament light chain as a biomarker in neurological disorders
2019 Standout
Gut biogeography of the bacterial microbiota
2015 Standout
Integrated Metagenomics/Metaproteomics Reveals Human Host-Microbiota Signatures of Crohn's Disease
2012
Multiplexed Serum Biomarkers for the Detection of Lung Cancer
2016
A Modular Organization of the Human Intestinal Mucosal Microbiota and Its Association with Inflammatory Bowel Disease
2013
Bioinformatics for the Human Microbiome Project
2012
Amyotrophic lateral sclerosis
2011 Standout
Optimization of affinity, specificity and function of designed influenza inhibitors using deep sequencing
2012 StandoutNobel
Structurally Mapping Endogenous Heme in the CcmCDE Membrane Complex for Cytochrome c Biogenesis
2018 StandoutNobel
Interaction between microbiota and immunity in health and disease
2020 Standout
Metaproteomics of our microbiome — Developing insight in function and activity in man and model systems
2013
Microgeographic Proteomic Networks of the Human Colonic Mucosa and Their Association With Inflammatory Bowel Disease
2016
Biomarkers in amyotrophic lateral sclerosis
2008
Mechanisms of NAFLD development and therapeutic strategies
2018 Standout
Single-molecule enzyme-linked immunosorbent assay detects serum proteins at subfemtomolar concentrations
2010 Standout
Biomedical Text Mining and Its Applications
2009
The coming of age of de novo protein design
2016 StandoutNatureNobel
Deep Learning: A Comprehensive Overview on Techniques, Taxonomy, Applications and Research Directions
2021 Standout
Using Big Data to Discover Diagnostics and Therapeutics for Gastrointestinal and Liver Diseases
2016
Learning generative models for protein fold families
2010
Applications of contact predictions to structural biology
2017 StandoutNobel
Improved protein structure prediction using potentials from deep learning
2020 StandoutNatureNobel
The intestinal epithelial barrier: a therapeutic target?
2016 Standout
Applications of machine learning to diagnosis and treatment of neurodegenerative diseases
2020
Machine Learning: Algorithms, Real-World Applications and Research Directions
2021 Standout
Deep transfer network with joint distribution adaptation: A new intelligent fault diagnosis framework for industry application
2019 Standout
Pattern recognition in bioinformatics
2013
Revolutionizing healthcare: the role of artificial intelligence in clinical practice
2023 Standout
A machine learning-based framework to identify type 2 diabetes through electronic health records
2016
Gut microbiota, metabolites and host immunity
2016 Standout
A systematic review shows no performance benefit of machine learning over logistic regression for clinical prediction models
2019 Standout
Explainable artificial intelligence (XAI) in deep learning-based medical image analysis
2022
Agent Based Modeling of Human Gut Microbiome Interactions and Perturbations
2016
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored
2010 Standout
Predicting protein function from sequence and structural data
2005
metaSPAdes: a new versatile metagenomic assembler
2017 Standout
Malassezia Is Associated with Crohn’s Disease and Exacerbates Colitis in Mouse Models
2019
Review of deep learning: concepts, CNN architectures, challenges, applications, future directions
2021 Standout
Correlation Between Intraluminal Oxygen Gradient and Radial Partitioning of Intestinal Microbiota
2014 Standout
High-throughput crystallization and structure determination in drug discovery
2002
Sixty-five years of the long march in protein secondary structure prediction: the final stretch?
2016
Prospers and Obstacles in Using Artificial Intelligence in Saudi Arabia Higher Education Institutions—The Potential of AI-Based Learning Outcomes
2023 Standout
Computational meta'omics for microbial community studies
2013
Novel cerebrospinal fluid biomarkers of axonal degeneration in frontotemporal dementia
2008
Current and Prospective Protein Biomarkers of Lung Cancer
2017
Deep Learning for Health Informatics
2016 Standout
RULES-IT: incremental transfer learning with RULES family
2014
A Comprehensive Survey on Transfer Learning
2020 Standout
A survey on Image Data Augmentation for Deep Learning
2019 Standout
A CSF biomarker panel for identification of patients with amyotrophic lateral sclerosis
2008
Convolutional neural networks for medical image analysis: State-of-the-art, comparisons, improvement and perspectives
2021
An intelligent fault diagnosis approach based on transfer learning from laboratory bearings to locomotive bearings
2019 Standout
Robust and accurate prediction of residue–residue interactions across protein interfaces using evolutionary information
2014 StandoutNobel
Recent advances and applications of machine learning in solid-state materials science
2019 Standout
Prediction of In‐hospital Mortality in Emergency Department Patients With Sepsis: A Local Big Data–Driven, Machine Learning Approach
2015
Explainable Artificial Intelligence (XAI): What we know and what is left to attain Trustworthy Artificial Intelligence
2023 Standout
Machine learning-based approach: global trends, research directions, and regulatory standpoints
2021 Standout
Microbial metaproteomics for characterizing the range of metabolic functions and activities of human gut microbiota
2015
Large-scale determination of previously unsolved protein structures using evolutionary information
2015 StandoutNobel
Template‐based modeling by ClusPro in CASP13 and the potential for using co‐evolutionary information in docking
2019 StandoutNobel
A survey of transfer learning
2016 Standout
Molecular Origin of Blood‐Based Infrared Spectroscopic Fingerprints**
2021 StandoutNobel
Clinical Application of Mass Spectrometry‐Based Proteomics in Lung Cancer Early Diagnosis
2020
A New Deep Transfer Learning Based on Sparse Auto-Encoder for Fault Diagnosis
2017 Standout
Irreversible Inhibitors of Serine, Cysteine, and Threonine Proteases
2002 Standout
Works of Vanathi Gopalakrishnan being referenced
Creating a pipeline of talent for informatics: STEM initiative for high school students in computer science, biology, and biomedical informatics
2014
Knowledge transfer via classification rules using functional mapping for integrative modeling of gene expression data
2015
Lung Cancer Serum Biomarker Discovery Using Label-Free Liquid Chromatography-Tandem Mass Spectrometry
2011
Transfer learning of classification rules for biomarker discovery and verification from molecular profiling studies
2011
A Metaproteomic Approach to Study Human-Microbial Ecosystems at the Mucosal Luminal Interface
2011
Comparison of probabilistic combination methods for protein secondary structure prediction
2004
Proteomic profiling of cerebrospinal fluid identifies biomarkers for amyotrophic lateral sclerosis
2005
A Multiplexed Serum Biomarker Immunoassay Panel Discriminates Clinical Lung Cancer Patients from High-Risk Individuals Found to be Cancer-Free by CT Screening
2012
A computational framework for the detection of subcortical brain dysmaturation in neonatal MRI using 3D Convolutional Neural Networks
2018
Protein Fold Recognition Using Segmentation Conditional Random Fields (SCRFs)
2006
Intelligent aids for parallel experiment planning and macromolecular crystallization.
2000
Improving classification performance with discretization on biomedical datasets.
2008
An Overview and Evaluation of Recent Machine Learning Imputation Methods Using Cardiac Imaging Data
2017
Automatic annotation of protein motif function with Gene Ontology terms
2004
sfDM: Open-Source Software for Temporal Analysis and Visualization of Brain Tumor Diffusion MR Using Serial Functional Diffusion Mapping
2015