Citation Impact
Citing Papers
Improvement of comparative model accuracy by free-energy optimization along principal components of natural structural variation
2004 StandoutNobel
Computational Design of Self-Assembling Protein Nanomaterials with Atomic Level Accuracy
2012 StandoutScienceNobel
The Genetic Basis for Bacterial Mercury Methylation
2013 StandoutScience
Protein structure determination using metagenome sequence data
2017 StandoutScienceNobel
NMR Structure Determination for Larger Proteins Using Backbone-Only Data
2010 StandoutScienceNobel
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
2013 Standout
MICAN : a protein structure alignment algorithm that can handle Multiple-chains, Inverse alignments, C α only models, Alternative alignments, and Non-sequential alignments
2013
MultiSeq: unifying sequence and structure data for evolutionary analysis
2006
Comprehensive genomic characterization defines human glioblastoma genes and core pathways
2008 StandoutNature
Aryl fluorosulfate analogues as potent antimicrobial agents: SAR, cytotoxicity and docking studies
2018
Structure of a mammalian ryanodine receptor
2014 StandoutNatureNobel
Structural Basis for Gating and Activation of RyR1
2016 StandoutNobel
Improved molecular replacement by density- and energy-guided protein structure optimization
2011 StandoutNatureNobel
MODBASE, a database of annotated comparative protein structure models, and associated resources
2003
AIM2 recognizes cytosolic dsDNA and forms a caspase-1-activating inflammasome with ASC
2009 StandoutNature
Autoinhibitory Interdomain Interactions and Subfamily-specific Extensions Redefine the Catalytic Core of the Human DEAD-box Protein DDX3
2015 StandoutNobel
Refinement of severely incomplete structures with maximum likelihood inBUSTER–TNT
2004
Structure of Human Phytanoyl-CoA 2-Hydroxylase Identifies Molecular Mechanisms of Refsum Disease*
2005
The Cryo-EM Structure of a Translation Initiation Complex from Escherichia coli
2005 StandoutNobel
Structure-Guided Reprogramming of Human cGAS Dinucleotide Linkage Specificity
2014 StandoutNobel
The 2 Å crystal structure of leucyl-tRNA synthetase and its complex with a leucyl-adenylate analogue
2000
MAMMOTH (Matching molecular models obtained from theory): An automated method for model comparison
2002
The Structure Superposition Database
2003
An Integrated Platform for Automated Analysis of Protein NMR Structures
2005
Structural origins of amino acid selection without editing by cysteinyl-tRNA synthetase
2002
Cryo-EM structure of the protein-conducting ERAD channel Hrd1 in complex with Hrd3
2017 StandoutNatureNobel
Principles for designing ideal protein structures
2012 StandoutNatureNobel
Structure-guided mutagenesis of a mucin-selective metalloprotease from Akkermansia muciniphila alters substrate preferences
2022 StandoutNobel
Domain-domain communication in aminoacyl-tRNA synthetases
2001
Structure and function of an irreversible agonist-β2 adrenoceptor complex
2011 StandoutNatureNobel
Functional Class I and II Amino Acid-activating Enzymes Can Be Coded by Opposite Strands of the Same Gene
2015
Alkylation damage in DNA and RNA—repair mechanisms and medical significance
2004
MODBASE, a database of annotated comparative protein structure models
2002
The CRISPR-associated DNA-cleaving enzyme Cpf1 also processes precursor CRISPR RNA
2016 StandoutNatureNobel
Dali server: conservation mapping in 3D
2010 Standout
UCSF Chimera—A visualization system for exploratory research and analysis
2004 Standout
High-resolution structure prediction and the crystallographic phase problem
2007 StandoutNatureNobel
Structures of Human Exonuclease 1 DNA Complexes Suggest a Unified Mechanism for Nuclease Family
2011 StandoutNobel
Crystal structure of the β2 adrenergic receptor–Gs protein complex
2011 StandoutNatureNobel
A Cell-Penetrating Scorpion Toxin Enables Mode-Specific Modulation of TRPA1 and Pain
2019 StandoutNobel
Structural studies on 2-oxoglutarate oxygenases and related double-stranded β-helix fold proteins
2006
Structure of a nanobody-stabilized active state of the β2 adrenoceptor
2011 StandoutNatureNobel
Advances and pitfalls of protein structural alignment
2009
The Rodin-Ohno hypothesis that two enzyme superfamilies descended from one ancestral gene: an unlikely scenario for the origins of translation that will not be dismissed
2014
Alignment of protein sequences by their profiles
2004
Protein structure prediction and analysis using the Robetta server
2004 StandoutNobel
The Protein Structure Initiative: achievements and visions for the future
2012
Homology modeling using parametric alignment ensemble generation with consensus and energy-based model selection
2006 StandoutNobel
Features and development of Coot
2010 Standout
Crystal Structure of the Non-heme Iron Dioxygenase PtlH in Pentalenolactone Biosynthesis
2007 StandoutNobel
Progress of Structural Genomics Initiatives: An Analysis of Solved Target Structures
2005
Exploring the repeat protein universe through computational protein design
2015 StandoutNatureNobel
ModBase, a database of annotated comparative protein structure models, and associated resources
2010
Study of the Structural Dynamics of the E. coli 70S Ribosome Using Real-Space Refinement
2003 StandoutNobel
Automated protein fold determination using a minimal NMR constraint strategy
2003
Genome-wide detection and characterization of positive selection in human populations
2007 StandoutNature
Structure of the 80S Ribosome from Saccharomyces cerevisiae—tRNA-Ribosome and Subunit-Subunit Interactions
2001 StandoutNobel
Simple yet functional phosphate-loop proteins
2018 StandoutNobel
PFAAT version 2.0: A tool for editing, annotating, and analyzing multiple sequence alignments
2007
Growth of novel protein structural data
2007 StandoutNobel
Structure of the STRA6 receptor for retinol uptake
2016 StandoutScienceNobel
Clinical iron deficiency disturbs normal human responses to hypoxia
2016 StandoutNobel
Pore-forming activity and structural autoinhibition of the gasdermin family
2016 StandoutNature
Crystal structure of Toll-like receptor adaptor MAL/TIRAP reveals the molecular basis for signal transduction and disease protection
2011 StandoutNobel
Structure of pyrrolysyl-tRNA synthetase, an archaeal enzyme for genetic code innovation
2007 StandoutNobel
De novo design of protein homo-oligomers with modular hydrogen-bond network–mediated specificity
2016 StandoutScienceNobel
DNA Mismatch Repair: Functions and Mechanisms
2005 StandoutNobel
A bacterial Argonaute with noncanonical guide RNA specificity
2016 StandoutNobel
An Ancestral Tryptophanyl-tRNA Synthetase Precursor Achieves High Catalytic Rate Enhancement without Ordered Ground-State Tertiary Structures
2016
Accurate protein structure modeling using sparse NMR data and homologous structure information
2012 StandoutNobel
Identification of simple arylfluorosulfates as potent agents against resistant bacteria
2021 StandoutNobel
Comparative Protein Structure Modeling Using MODELLER
2007 Standout
Protein Structure Prediction and Structural Genomics
2001 StandoutScienceNobel
Mg2+-Free Bacillus stearothermophilus Tryptophanyl-tRNA Synthetase Retains a Major Fraction of the Overall Rate Enhancement for Tryptophan Activation
2008
The structural basis of cysteine aminoacylation of tRNA Pro by prolyl-tRNA synthetases
2003 StandoutNobel
Automated Analysis of Protein NMR Assignments and Structures
2004
RADIOLYTIC PROTEIN FOOTPRINTING WITH MASS SPECTROMETRY TO PROBE THE STRUCTURE OF MACROMOLECULAR COMPLEXES
2006
Elicitation of structure-specific antibodies by epitope scaffolds
2010 StandoutNobel
Jalview Version 2—a multiple sequence alignment editor and analysis workbench
2009 Standout
Comparative Protein Structure Modeling Using Modeller
2006 Standout
Works of Valentin Ilyin being referenced
Structural genomics: A pipeline for providing structures for the biologist
2002
TOPOFIT-DB, a database of protein structural alignments based on the TOPOFIT method
2006
A comprehensive analysis of non-sequential alignments between all protein structures
2007
Interconversion of ATP Binding and Conformational Free Energies by Tryptophanyl-tRNA Synthetase: Structures of ATP Bound to Open and Closed, Pre-Transition-state Conformations
2002
2.9 Å crystal structure of ligand‐free tryptophanyl‐tRNA synthetase: Domain movements fragment the adenine nucleotide binding site
2000
Structural alignment of proteins by a novel TOPOFIT method, as a superimposition of common volumes at a topomax point
2004
DBAli: a database of protein structure alignments
2001
ModView, visualization of multiple protein sequences andstructures
2002
LigBase: a database of families of aligned ligand binding sites in known protein sequences and structures
2002
Friend, an integrated analytical front-end application for bioinformatics
2005
Structural genomics of enzymes involved in sterol/isoprenoid biosynthesis
2001