Standout Papers
Citation Impact
Citing Papers
NCBI Taxonomy: a comprehensive update on curation, resources and tools
2020 Standout
The biomass distribution on Earth
2018 Standout
Microbial biogeography of wine grapes is conditioned by cultivar, vintage, and climate
2013 Standout
Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin
2018 Standout
Microbial diversity drives multifunctionality in terrestrial ecosystems
2016 Standout
Dysbiosis of Fungal Microbiota in the Intestinal Mucosa of Patients with Colorectal Adenomas
2015
Improved metagenomic analysis with Kraken 2
2019 Standout
The gut mycobiome of the Human Microbiome Project healthy cohort
2017 Standout
Trails of river monsters: Detecting critically endangered Mekong giant catfish Pangasianodon gigas using environmental DNA
2016
Role of the normal gut microbiota
2015 Standout
Embracing the unknown: disentangling the complexities of the soil microbiome
2017 Standout
Towards next‐generation biodiversity assessment using DNA metabarcoding
2012
Variations in 16S rRNA-based microbiome profiling between pyrosequencing runs and between pyrosequencing facilities
2014
Applications of next-generation sequencing to phylogeography and phylogenetics
2011
Molecular evidence for glacial refugia of mountain plants in the European Alps
2005 Standout
Towards global patterns in the diversity and community structure of ectomycorrhizal fungi
2012
Root exudate metabolites drive plant-soil feedbacks on growth and defense by shaping the rhizosphere microbiota
2018 Standout
Plant–microbiome interactions: from community assembly to plant health
2020 Standout
Identification of fungi in shotgun metagenomics datasets
2018
Analysis of plant microbe interactions in the era of next generation sequencing technologies
2014
Forgotten fungi—the gut mycobiome in human health and disease
2017
Conserving biodiversity under climate change: the rear edge matters
2005 Standout
Revealing the unexplored fungal communities in deep groundwater of crystalline bedrock fracture zones in Olkiluoto, Finland
2015
Sequence Depth, Not PCR Replication, Improves Ecological Inference from Next Generation DNA Sequencing
2014
Interaction between microbiota and immunity in health and disease
2020 Standout
Sequencing our way towards understanding global eukaryotic biodiversity
2012
Host Remodeling of the Gut Microbiome and Metabolic Changes during Pregnancy
2012 Standout
Characterization of the Vaginal Micro- and Mycobiome in Asymptomatic Reproductive-Age Estonian Women
2013
Analysing Microbial Community Composition through Amplicon Sequencing: From Sampling to Hypothesis Testing
2017
Extensive gene flow over Europe and possible speciation over Eurasia in the ectomycorrhizal basidiomycete Laccaria amethystina complex
2011
Efficacy of DNA amplification in tissue biopsy samples to improve the detection of invasive fungal disease
2012
A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System
2013 Standout
Bioinformatic challenges for DNA metabarcoding of plants and animals
2012
Digging the New York City Skyline: Soil Fungal Communities in Green Roofs and City Parks
2013
Experimental and analytical tools for studying the human microbiome
2011
Contamination in Low Microbial Biomass Microbiome Studies: Issues and Recommendations
2018
Adaptation, migration or extirpation: climate change outcomes for tree populations
2008 Standout
Long livestock farming history and human landscape shaping revealed by lake sediment DNA
2014 Standout
Keystone taxa as drivers of microbiome structure and functioning
2018 Standout
Nuclear vs. plastid data: complex Pleistocene history of a circumpolar key species
2007
Carnivore diet analysis based on next‐generation sequencing: application to the leopard cat (Prionailurus bengalensis) in Pakistan
2012
Next-generation approaches to the microbial ecology of food fermentations
2012
Mining museums for historical DNA: advances and challenges in museomics
2021 Standout
DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets
2017 Standout
The emerging biofuel crop Camelina sativa retains a highly undifferentiated hexaploid genome structure
2014 Standout
UPARSE: highly accurate OTU sequences from microbial amplicon reads
2013 Standout
Soil microbiomes and climate change
2019 Standout
Distinct Polysaccharide Utilization Determines Interspecies Competition between Intestinal Prevotella spp.
2020 StandoutNobel
Evaluation of the potential for interspecific hybridization between Camelina sativa and related wild Brassicaceae in anticipation of field trials of GM camelina
2013
Belowground biodiversity and ecosystem functioning
2014 StandoutNature
Short-Read Assembly of Full-Length 16S Amplicons Reveals Bacterial Diversity in Subsurface Sediments
2013
The human microbiome: at the interface of health and disease
2012 Standout
INVITED REVIEW: Comparative organization of chloroplast, mitochondrial and nuclear diversity in plant populations
2004 Standout
New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities
2012 Standout
Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species
2015
FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild
2015 Standout
Soil quality – A critical review
2018 Standout
Evaluation of methods to estimate production, biomass and turnover of ectomycorrhizal mycelium in forests soils – A review
2012
Archaeorhizomycetes: Unearthing an Ancient Class of Ubiquitous Soil Fungi
2011 Science
2015 Standout
Climate Change 2022 – Impacts, Adaptation and Vulnerability
2023 Standout
Tree diversity and species identity effects on soil fungi, protists and animals are context dependent
2015
Stacks: an analysis tool set for population genomics
2013 Standout
Lineages of ectomycorrhizal fungi revisited: Foraging strategies and novel lineages revealed by sequences from belowground
2013
Fungal palaeodiversity revealed using high‐throughput metabarcoding of ancient DNA from arctic permafrost
2012
The Hidden World within Plants: Ecological and Evolutionary Considerations for Defining Functioning of Microbial Endophytes
2015 Standout
Improved Selection of Internal Transcribed Spacer-Specific Primers Enables Quantitative, Ultra-High-Throughput Profiling of Fungal Communities
2013
ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis
2011
Random Sampling Process Leads to Overestimation of β-Diversity of Microbial Communities
2013
Camelina uses, genetics, genomics, production, and management
2016 Standout
New land in the Neotropics: a review of biotic community, ecosystem, and landscape transformations in the face of climate and glacier change
2019
Soil Reclamation of Abandoned Mine Lands by Revegetation in Northwestern Part of Transylvania: A 40-Year Retrospective Study
2019 Standout
Fast Diploidization in Close Mesopolyploid Relatives ofArabidopsis
2010
The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications
2018 Standout
Practice Guidelines for the Diagnosis and Management of Aspergillosis: 2016 Update by the Infectious Diseases Society of America
2016 Standout
The biodiversity of species and their rates of extinction, distribution, and protection
2014 StandoutScience
Community assembly of ectomycorrhizal fungi along a subtropical secondary forest succession
2014
Redefining fine roots improves understanding of below‐ground contributions to terrestrial biosphere processes
2015 Standout
Stochastic Community Assembly: Does It Matter in Microbial Ecology?
2017 Standout
Hybridization ddRAD‐sequencing for population genomics of nonmodel plants using highly degraded historical specimen DNA
2020
Emerging threats and persistent conservation challenges for freshwater biodiversity
2018 Standout
Insect decline in the Anthropocene: Death by a thousand cuts
2021 Standout
Mycorrhizal ecology and evolution: the past, the present, and the future
2015 Standout
Forest Soil Bacteria: Diversity, Involvement in Ecosystem Processes, and Response to Global Change
2017
A general species delimitation method with applications to phylogenetic placements
2013 Standout
Accurate Estimation of Fungal Diversity and Abundance through Improved Lineage-Specific Primers Optimized for Illumina Amplicon Sequencing
2016
Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys
2015 Standout
Towards the unification of sequence‐based classification and sequence‐based identification of host‐associated microorganisms
2014
Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungi
2015
Back to the future: natural history and the way forward in modern fungal ecology
2014
Fungal identification biases in microbiome projects
2016
Belowground response of prairie restoration and resiliency to drought
2018
Parsing ecological signal from noise in next generation amplicon sequencing
2014
Survey of corticioid fungi in North American pinaceous forests reveals hyperdiversity, underpopulated sequence databases, and species that are potentially ectomycorrhizal
2017
Works of Tor Carlsen being referenced
Different bacterial communities in ectomycorrhizae and surrounding soil
2013
ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases
2010 Standout
Towards standardization of the description and publication of next‐generation sequencing datasets of fungal communities
2011
High consistency between replicate 454 pyrosequencing analyses of ectomycorrhizal plant root samples
2011
Changes in the root‐associated fungal communities along a primary succession gradient analysed by 454 pyrosequencing
2011
Two invasive populations of the dry rot fungusSerpula lacrymansshow divergent population genetic structures
2010
CLOTU: An online pipeline for processing and clustering of 454 amplicon reads into OTUs followed by taxonomic annotation
2011
Evolutionary history of Serpulaceae (Basidiomycota): molecular phylogeny, historical biogeography and evidence for a single transition of nutritional mode
2011
Primary succession of B istorta vivipara ( L .) D elabre ( P olygonaceae) root‐associated fungi mirrors plant succession in two glacial chronosequences
2015
High diversity of root associated fungi in both alpine and arctic Dryas octopetala
2010
Repeatedly out of Beringia:Cassiope tetragonaembraces the Arctic
2007
Employing 454 amplicon pyrosequencing to reveal intragenomic divergence in the internal transcribed spacerrDNA region in fungi
2013
Fungal community analysis by high‐throughput sequencing of amplified markers – a user's guide
2013
Biogeography and Phylogeny of Cardamine (Brassicaceae)1
2009
Don't make a mista(g)ke: is tag switching an overlooked source of error in amplicon pyrosequencing studies?
2012