Citation Impact
Citing Papers
Plants with double genomes might have had a better chance to survive the Cretaceous–Tertiary extinction event
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The hidden duplication past of Arabidopsis thaliana
2002
Receptor-like kinases from Arabidopsis form a monophyletic gene family related to animal receptor kinases
2001
Modeling gene and genome duplications in eukaryotes
2005
Functional Divergence of Duplicated Genes Formed by Polyploidy during Arabidopsis Evolution[W]
2004
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
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Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics
2004
Molecular and Phylogenetic Analyses of the Complete MADS-Box Transcription Factor Family in Arabidopsis
2003
Comparative Analysis of the Receptor-Like Kinase Family in Arabidopsis and Rice[W]
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Comparative Genomics and Reverse Genetics Analysis Reveal Indispensable Functions of the Serine Acetyltransferase Gene Family in Arabidopsis
2008
Scientific Utopia
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One thousand plant transcriptomes and the phylogenomics of green plants
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Mechanism of auxin perception by the TIR1 ubiquitin ligase
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Large synteny blocks revealed between Caenorhabditis elegans and Caenorhabditis briggsae genomes using OrthoCluster
2010
Nonrandom divergence of gene expression following gene and genome duplications in the flowering plant Arabidopsis thaliana
2006
Statistical inference of chromosomal homology based on gene colinearity and applications to Arabidopsis and rice
2006
A BAC-based physical map of Brachypodium distachyon and its comparative analysis with rice and wheat
2009
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
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Finishing the euchromatic sequence of the human genome
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INVITED REVIEW: Using genome scans of DNA polymorphism to infer adaptive population divergence
2005
The F-box protein TIR1 is an auxin receptor
2005 StandoutNature
Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events
2003 Nature
Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements
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The global diversity of birds in space and time
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Polyploidy and angiosperm diversification
2009
Caterpillar-induced nocturnal plant volatiles repel conspecific females
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Ancestral genome duplication in rice
2004
Circular RNAs are a large class of animal RNAs with regulatory potency
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A Double S Shape Provides the Structural Basis for the Extraordinary Binding Specificity of Dscam Isoforms
2008 StandoutNobel
Comparative analysis of Gossypium and Vitis genomes indicates genome duplication specific to the Gossypium lineage
2011
Systematic functional analysis of the Caenorhabditis elegans genome using RNAi
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Evaluating and Characterizing Ancient Whole-Genome Duplications in Plants with Gene Count Data
2016
Cryopyrin activates the inflammasome in response to toxins and ATP
2006 StandoutNature
A Vast Repertoire of Dscam Binding Specificities Arises from Modular Interactions of Variable Ig Domains
2007 StandoutNobel
Palaeogenomics of plants: synteny-based modelling of extinct ancestors
2010
LineUp: Statistical Detection of Chromosomal Homology With Application to Plant Comparative Genomics
2003
FAST‐TRACK: Integrating QTL mapping and genome scans towards the characterization of candidate loci under parallel selection in the lake whitefish (Coregonus clupeaformis)
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MicroSyn: A user friendly tool for detection of microsynteny in a gene family
2011
Recognition of microorganisms and activation of the immune response
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Tracing the Evolution of the Floral Homeotic B- and C-Function Genes through Genome Synteny
2010
Understanding angiosperm diversification using small and large phylogenetic trees
2011
Resolving Difficult Phylogenetic Questions: Why More Sequences Are Not Enough
2011
Scientific method: Statistical errors
2014 StandoutNature
Function and evolution of the plant MADS-box gene family
2001
The JAZ family of repressors is the missing link in jasmonate signalling
2007 StandoutNature
JAZ repressor proteins are targets of the SCFCOI1 complex during jasmonate signalling
2007 StandoutNature
A Recent Polyploidy Superimposed on Older Large-Scale Duplications in the Arabidopsis Genome
2003
Dendrite Self-Avoidance Is Controlled by Dscam
2007
The Basic Helix-Loop-Helix Transcription Factor Family in Plants: A Genome-Wide Study of Protein Structure and Functional Diversity
2003
Phylogenetic Analysis of the Plant‐specificZinc Finger‐HomeoboxandMini Zinc FingerGene Families
2008
Origin and Early Evolution of Angiosperms
2008
Speciation through sensory drive in cichlid fish
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Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps
2008
Adaptive Molecular Evolution in the Opsin Genes of Rapidly Speciating Cichlid Species
2005
Genome-wide comparative phylogenetic analysis of the rice and Arabidopsis Dof gene families
2003
Detecting and Locating Whole Genome Duplications on a Phylogeny: A Probabilistic Approach
2013
Genome duplication and the origin of angiosperms
2005
microRNA-Directed Phasing during Trans-Acting siRNA Biogenesis in Plants
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Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
2010 Standout
MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
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Plant pathogens and integrated defence responses to infection
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Detecting the number of clusters of individuals using the software structure : a simulation study
2005 Standout
DiagHunter and GenoPix2D: programs for genomic comparisons, large-scale homology discovery and visualization
2003
Genome-Wide Analysis of the GRAS Gene Family in Rice and Arabidopsis
2004
Ancestral polyploidy in seed plants and angiosperms
2011 StandoutNature
CYNTENATOR: Progressive Gene Order Alignment of 17 Vertebrate Genomes
2010
More than the sum of their parts: On the evolution of proteins from peptides
2003
Multiple Paleopolyploidizations during the Evolution of the Compositae Reveal Parallel Patterns of Duplicate Gene Retention after Millions of Years
2008
Widespread genome duplications throughout the history of flowering plants
2006
The prevalence of terraced treescapes in analyses of phylogenetic data sets
2018
New in silico insight into the synteny between rice (Oryza sativa L.) and maize (Zea mays L.) highlights reshuffling and identifies new duplications in the rice genome
2004
The causes and consequences of genetic heterogeneity in cancer evolution
2013 StandoutNature
Gene and genome duplications: the impact of dosage-sensitivity on the fate of nuclear genes
2009
SyMAP: A system for discovering and viewing syntenic regions of FPC maps
2006
Identifying adaptive genetic divergence among populations from genome scans
2004
Detecting the undetectable: uncovering duplicated segments in Arabidopsis by comparison with rice
2002
Analyses of LTR-Retrotransposon Structures Reveal Recent and Rapid Genomic DNA Loss in Rice
2004
Chromosome evolution in eukaryotes: a multi-kingdom perspective
2005
The Automatic Detection of Homologous Regions (ADHoRe) and Its Application to Microcolinearity Between Arabidopsis and Rice
2002
Building Genomic Profiles for Uncovering Segmental Homology in the Twilight Zone
2004
Modes of Gene Duplication Contribute Differently to Genetic Novelty and Redundancy, but Show Parallels across Divergent Angiosperms
2011
The plant immune system
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Belowground biodiversity and ecosystem functioning
2014 StandoutNature
Analysis of 41 plant genomes supports a wave of successful genome duplications in association with the Cretaceous–Paleogene boundary
2014
Comparative inference of illegitimate recombination between rice and sorghum duplicated genes produced by polyploidization
2009
Mosaic Organization of Orthologous Sequences in Grass Genomes
2002
SyMAP v3.4: a turnkey synteny system with application to plant genomes
2011
Challenges for identifying functionally important genetic variation: the promise of combining complementary research strategies
2005
Hepatitis C Virus RNA Functionally Sequesters miR-122
2015 StandoutNobel
Evolutionary dynamics of grass genomes
2002
The map-based sequence of the rice genome
2005 StandoutNature
Simple yet functional phosphate-loop proteins
2018 StandoutNobel
Machine learning for data-driven discovery in solid Earth geoscience
2019 StandoutScience
Complex regulation of the TIR1/AFB family of auxin receptors
2009
Circadian clock disruption improves the efficacy of chemotherapy through p73-mediated apoptosis
2011 StandoutNobel
Angiosperm genome comparisons reveal early polyploidy in the monocot lineage
2009
Duplication and Divergence: The Evolution of New Genes and Old Ideas
2004
Bias in Plant Gene Content Following Different Sorts of Duplication: Tandem, Whole-Genome, Segmental, or by Transposition
2009
Expansion of the Receptor-Like Kinase/Pelle Gene Family and Receptor-Like Proteins in Arabidopsis
2003
The Cambrian Conundrum: Early Divergence and Later Ecological Success in the Early History of Animals
2011 StandoutScience
Stacks: an analysis tool set for population genomics
2013 Standout
Evidence That Rice and Other Cereals Are Ancient Aneuploids
2003
Ramshackle (Brwd3) promotes light-induced ubiquitylation of Drosophila Cryptochrome by DDB1-CUL4-ROC1 E3 ligase complex
2013 StandoutNobel
Genome sequencing and analysis of the model grass Brachypodium distachyon
2010 StandoutNature
Importance of Lineage-Specific Expansion of Plant Tandem Duplicates in the Adaptive Response to Environmental Stimuli
2008
Regulation and function of root exudates
2009
Reaction mechanism of Drosophila cryptochrome
2010 StandoutNobel
Induced Responses to Herbivory and Increased Plant Performance
1998 Science
Identification and Characterization of Shared Duplications between Rice and Wheat Provide New Insight into Grass Genome Evolution
2008
Widespread Paleopolyploidy in Model Plant Species Inferred from Age Distributions of Duplicate Genes[W]
2004
Rapid recent growth and divergence of rice nuclear genomes
2004
Genome‐wide association reveals genetic basis for the propensity to migrate in wild populations of rainbow and steelhead trout
2012
Genome-Wide Analysis of the ERF Gene Family in Arabidopsis and Rice
2006 Standout
Comparative genomic analysis of mitogen activated protein kinase gene family in grapevine
2010
Different Types and Rates of Genome Evolution Detected by Comparative Sequence Analysis of Orthologous Segments From Four Cereal Genomes
2002
Ultrafast Dynamics of Flavins in Five Redox States
2008 StandoutNobel
Arabidopsis Transcription Factors: Genome-Wide Comparative Analysis Among Eukaryotes
2000 StandoutScience
Toward the Geoscience Paper of the Future: Best practices for documenting and sharing research from data to software to provenance
2016
Whole-Genome Comparison of Leucine-Rich Repeat Extensins in Arabidopsis and Rice. A Conserved Family of Cell Wall Proteins Form a Vegetative and a Reproductive Clade,
2003
Genetics of Aux/IAA and ARF action in plant growth and development
2002
A cryptochrome/photolyase class of enzymes with single-stranded DNA-specific photolyase activity
2006 StandoutNobel
Structural Dynamics of Eukaryotic Chromosome Evolution
2003 StandoutScience
Human DNA Repair Genes
2001 StandoutScienceNobel
Paleopolyploidy in the Brassicales: Analyses of the Cleome Transcriptome Elucidate the History of Genome Duplications in Arabidopsis and Other Brassicales
2009
Cryptochrome Structure and Signal Transduction
2003
Finding and Comparing Syntenic Regions among Arabidopsis and the Outgroups Papaya, Poplar, and Grape: CoGe with Rosids
2008
Ultrafast Dynamics and Anionic Active States of the Flavin Cofactor in Cryptochrome and Photolyase
2008 StandoutNobel
Missing Data in Phylogenetic Analysis: Reconciling Results from Simulations and Empirical Data
2011
Genome-Wide Analysis of NBS-LRR–Encoding Genes in Arabidopsis[W]
2003
Promoting Transparency in Social Science Research
2014 StandoutScienceNobel
Inference of population structure using multilocus genotype data: dominant markers and null alleles
2007 Standout
CATERPILLER: A Novel Gene Family Important in Immunity, Cell Death, and Diseases
2004
Works of Todd Vision being referenced
Tracking the evolution of alternatively spliced exons within the Dscam family
2006
Divergence in Expression between Duplicated Genes in Arabidopsis
2007
The molecular ecologist's guide to expressed sequence tags
2006
Patterns of Nucleotide Substitution Among Simultaneously Duplicated Gene Pairs in Arabidopsis thaliana
2002
Fast identification and statistical evaluation ofsegmental homologies in comparative maps
2003
Pathogen-induced systemic resistance in Ipomoea purpurea
1995
Using ESTs for phylogenomics: can one accurately infer a phylogenetic tree from a gappy alignment?
2008
Contrasting Modes of Diversification in the Aux/IAA and ARF Gene Families
2004
Comparing sequenced segments of the tomato and Arabidopsis genomes: Large-scale duplication followed by selective gene loss creates a network of synteny
2000
The Origins of Genomic Duplications in Arabidopsis
2000 Science
Identification and Characterization of Aluminum Tolerance Loci in Arabidopsis (Landsberg erecta × Columbia) by Quantitative Trait Locus Mapping. A Physiologically Simple But Genetically Complex Trait
2003
Open Data and the Social Contract of Scientific Publishing
2010