Citation Impact
Citing Papers
Confirmation of intersubunit connectivity and topology of designed protein complexes by native MS
2018 StandoutNobel
Directed Evolution Mimics Allosteric Activation by Stepwise Tuning of the Conformational Ensemble
2018 StandoutNobel
Magnesium-cationic Dummy Atom Molecules Enhance Representation of DNA Polymerase β in Molecular Dynamics Simulations: Improved Accuracy in Studies of Structural Features and Mutational Effects
2006 StandoutNobel
Multiscale technologies for treatment of ischemic cardiomyopathy
2017
Absolute binding free energy calculations: On the accuracy of computational scoring of protein–ligand interactions
2010 StandoutNobel
Refinement of the AMBER Force Field for Nucleic Acids: Improving the Description of α/γ Conformers
2007 Standout
Trajectory NG: portable, compressed, general molecular dynamics trajectories
2011
Computational Enzyme Design
2013 StandoutNobel
The ClusPro web server for protein–protein docking
2017 Standout
NMR spectroscopy brings invisible protein states into focus
2009
MDAnalysis: A toolkit for the analysis of molecular dynamics simulations
2011 Standout
Simulating electrostatic energies in proteins: Perspectives and some recent studies of pKas, redox, and other crucial functional properties
2011 StandoutNobel
Exploring the role of large conformational changes in the fidelity of DNA polymerase β
2007 StandoutNobel
Efficient compression of molecular dynamics trajectory files
2012
From protein sequence to dynamics and disorder with DynaMine
2013
Towards Accurate Free Energy Calculations in Ligand Protein-Binding Studies
2010
A binding free energy decomposition approach for accurate calculations of the fidelity of DNA polymerases
2009 StandoutNobel
The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes
2015 Standout
Prechemistry versus preorganization in DNA replication fidelity
2011 StandoutNobel
Nucleic acid solvation: from outside to insight
2007
Alternate States of Proteins Revealed by Detailed Energy Landscape Mapping
2010 StandoutNobel
Dynamics of the base of ribosomal A-site finger revealed by molecular dynamics simulations and Cryo-EM
2009 StandoutNobel
A comprehensive examination of the contributions to the binding entropy of protein–ligand complexes
2010 StandoutNobel
Wordom: A user‐friendly program for the analysis of molecular structures, trajectories, and free energy surfaces
2010
DNA polymerase β catalytic efficiency mirrors the Asn279–dCTP H‐bonding strength
2007 StandoutNobel
Engineering proteins for thermostability through rigidifying flexible sites
2013
On the usefulness of ion-mobility mass spectrometry and SAXS data in scoring docking decoys
2013
Characterization of spike glycoprotein of SARS-CoV-2 on virus entry and its immune cross-reactivity with SARS-CoV
2020 Standout
Structural Characterization of Protein–Protein Complexes by Integrating Computational Docking with Small-angle Scattering Data
2010
Structural stability of electrosprayed proteins: temperature and hydration effects
2009
Computational design of an endo-1,4- -xylanase ligand binding site
2011
Modeling nucleic acids
2012 StandoutNobel
Validating the vitality strategy for fighting drug resistance
2011 StandoutNobel
Quantitative exploration of the molecular origin of the activation of GTPase
2013 StandoutNobel
Clustering Molecular Dynamics Trajectories: 1. Characterizing the Performance of Different Clustering Algorithms
2007
Converting structural information into an allosteric-energy-based picture for elongation factor Tu activation by the ribosome
2011 StandoutNobel
Computer Simulation of Liquids
2017 Standout
Charge-State Dependent Compaction and Dissociation of Protein Complexes: Insights from Ion Mobility and Molecular Dynamics
2012
Investigation of Structural Dynamics of Enzymes and Protonation States of Substrates Using Computational Tools
2016
A molecular conveyor belt by controlled delivery of single molecules into ultrashort laser pulses
2012 StandoutNobel
CHARMM-GUIMembrane Buildertoward realistic biological membrane simulations
2014 Standout
CHARMM-GUI Input Generator for NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM Simulations Using the CHARMM36 Additive Force Field
2015 Standout
ff14SB: Improving the Accuracy of Protein Side Chain and Backbone Parameters from ff99SB
2015 Standout
Dineopentyl Phosphate Hydrolysis: Evidence for Stepwise Water Attack
2008 StandoutNobel
MMPBSA.py: An Efficient Program for End-State Free Energy Calculations
2012 Standout
Dynamics of B-DNA on the Microsecond Time Scale
2007
Catalytic Effects of Mutations of Distant Protein Residues in Human DNA Polymerase β: Theory and Experiment
2012 StandoutNobel
Optimization of the Additive CHARMM All-Atom Protein Force Field Targeting Improved Sampling of the Backbone ϕ, ψ and Side-Chain χ1 and χ2 Dihedral Angles
2012 Standout
Classification of Intrinsically Disordered Regions and Proteins
2014 Standout
Toward Accurate Screening in Computer-Aided Enzyme Design
2009 StandoutNobel
An efficient and extensible format, library, and API for binary trajectory data from molecular simulations
2013
Exploring the Essential Dynamics of B-DNA
2005
Wordom: a program for efficient analysis of molecular dynamics simulations
2007
Quantum superposition of molecules beyond 25 kDa
2019 StandoutNobel
Modular repeat protein sculpting using rigid helical junctions
2020 StandoutNobel
PLUMED 2: New feathers for an old bird
2013 Standout
Experimental Verification of Force Fields for Molecular Dynamics Simulations Using Gly-Pro-Gly-Gly
2010
Progress in Ab Initio QM/MM Free-Energy Simulations of Electrostatic Energies in Proteins: Accelerated QM/MM Studies of pKa, Redox Reactions and Solvation Free Energies
2008 StandoutNobel
Designing and defining dynamic protein cage nanoassemblies in solution
2016
Reactive Oxygen Species (ROS)-Based Nanomedicine
2019 Standout
Tailored photocleavable peptides: fragmentation and neutralization pathways in high vacuum
2018 StandoutNobel
Determination of the Structures of Symmetric Protein Oligomers from NMR Chemical Shifts and Residual Dipolar Couplings
2011 StandoutNobel
GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers
2015 Standout
Challenges and Advances in Validating Enzyme Design Proposals: The Case of Kemp Eliminase Catalysis
2011 StandoutNobel
Quantum‐Assisted Metrology of Neutral Vitamins in the Gas Phase
2017
Identification of H209 as Essential for pH 8-Triggered Receptor-Independent Syncytium Formation by S Protein of Mouse Hepatitis Virus A59
2018
A hybrid NMR/SAXS‐based approach for discriminating oligomeric protein interfaces using R osetta
2014 StandoutNobel
Implementation and benchmark of a long-range corrected functional in the density functional based tight-binding method
2015
ST‐analyzer: A web‐based user interface for simulation trajectory analysis
2014
GFN2-xTB—An Accurate and Broadly Parametrized Self-Consistent Tight-Binding Quantum Chemical Method with Multipole Electrostatics and Density-Dependent Dispersion Contributions
2019 Standout
On the Interpretation of the Observed Linear Free Energy Relationship in Phosphate Hydrolysis: A Thorough Computational Study of Phosphate Diester Hydrolysis in Solution
2008 StandoutNobel
Pushing the mass limit for intact launch and photoionization of large neutral biopolymers
2018 StandoutNobel
Simulating the electrostatic guidance of the vectorial translocations in hexameric helicases and translocases
2009 StandoutNobel
PTRAJ and CPPTRAJ: Software for Processing and Analysis of Molecular Dynamics Trajectory Data
2013 Standout
Improving the Efficiency of Ligand-Binding Protein Design with Molecular Dynamics Simulations
2019 StandoutNobel
Simulating the Effect of DNA Polymerase Mutations on Transition-State Energetics and Fidelity: Evaluating Amino Acid Group Contribution and Allosteric Coupling for Ionized Residues in Human Pol β
2006 StandoutNobel
Molecular dynamics simulation of triclinic lysozyme in a crystal lattice
2015
Works of Tim Meyer being referenced
Human Engineered Heart Muscles Engraft and Survive Long Term in a Rodent Myocardial Infarction Model
2015
Data Mining of Molecular Dynamics Trajectories of Nucleic Acids
2006
MoDEL (Molecular Dynamics Extended Library): A Database of Atomistic Molecular Dynamics Trajectories
2010
Linear response theory: An alternative to PB and GB methods for the analysis of molecular dynamics trajectories?
2004
A consensus view of protein dynamics
2007
Exploring Protein Dynamics Space: The Dynasome as the Missing Link between Protein Structure and Function
2012
Partition of protein solvation into group contributions from molecular dynamics simulations
2004
An Atomistic View to the Gas Phase Proteome
2009
A Histidine Residue of the Influenza Virus Hemagglutinin Controls the pH Dependence of the Conformational Change Mediating Membrane Fusion
2014
Proteins in the gas phase
2012
On the Use of low-resolution Data to Improve Structure Prediction of Proteins and Protein Complexes
2009
Essential Dynamics: A Tool for Efficient Trajectory Compression and Management
2006