Citation Impact
Citing Papers
Comparison of bacterial genome assembly software for MinION data and their applicability to medical microbiology
2016
Characterizing and explaining the impact of disease-associated mutations in proteins without known structures or structural homologs
2022 StandoutNobel
Polymyxins: Antibacterial Activity, Susceptibility Testing, and Resistance Mechanisms Encoded by Plasmids or Chromosomes
2017
NanoPack: visualizing and processing long-read sequencing data
2018 Standout
Assembly of long error-prone reads using de Bruijn graphs
2016
Completing bacterial genome assemblies with multiplex MinION sequencing
2017
Sculpting conducting nanopore size and shape through de novo protein design
2024 StandoutScienceNobel
MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
2019 Standout
Identification of a novel transposon-associated phosphoethanolamine transferase gene, mcr-5, conferring colistin resistance in d-tartrate fermenting Salmonella enterica subsp. enterica serovar Paratyphi B
2017
CATHe: detection of remote homologues for CATH superfamilies using embeddings from protein language models
2023
Fast and sensitive mapping of nanopore sequencing reads with GraphMap
2016
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
2018 Standout
Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella
2015
Structural genomics is the largest contributor of novel structural leverage
2009
Rapid Detection of Genetic Engineering, Structural Variation, and Antimicrobial Resistance Markers in Bacterial Biothreat Pathogens by Nanopore Sequencing
2019
The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community
2016
Performance comparison of benchtop high-throughput sequencing platforms
2012
HMMER web server: interactive sequence similarity searching
2011 Standout
A galaxy of folds
2009
Revisiting the STEC Testing Approach: Using espK and espV to Make Enterohemorrhagic Escherichia coli (EHEC) Detection More Reliable in Beef
2016 Standout
The Importance of Bacterial Culture to Food Microbiology in the Age of Genomics
2017
PLIP: fully automated protein–ligand interaction profiler
2015 Standout
Pfam: the protein families database
2013 Standout
Exploiting and engineering hemoproteins for abiological carbene and nitrene transfer reactions
2017 StandoutNobel
Two Novel EHEC/EAEC Hybrid Strains Isolated from Human Infections
2014
I-TASSER server: new development for protein structure and function predictions
2015 Standout
CATH: comprehensive structural and functional annotations for genome sequences
2014
The RCSB Protein Data Bank: redesigned web site and web services
2010
Extending CATH: increasing coverage of the protein structure universe and linking structure with function
2010
Nowcasting and forecasting the potential domestic and international spread of the 2019-nCoV outbreak originating in Wuhan, China: a modelling study
2020 Standout
TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy
2019 Standout
Biological roles of glycans
2016 Standout
Rational design of α-helical tandem repeat proteins with closed architectures
2015 StandoutNatureNobel
High-Throughput Sequencing Technologies
2015
Genetic characterization of mcr-1 -bearing plasmids to depict molecular mechanisms underlying dissemination of the colistin resistance determinant
2016
Prevalence of colistin resistance gene (mcr-1) containing Enterobacteriaceae in feces of patients attending a tertiary care hospital and detection of a mcr-1 containing, colistin susceptible E. coli
2017
Rapid Short-Read Sequencing and Aneuploidy Detection Using MinION Nanopore Technology
2015
Automated comparative protein structure modeling with SWISS‐MODEL and Swiss‐PdbViewer: A historical perspective
2009 Standout
Environmental factors influencing the development and spread of antibiotic resistance
2017 Standout
Gene3D: a domain-based resource for comparative genomics, functional annotation and protein network analysis
2011
Three decades of nanopore sequencing
2016
Genomic and Functional Characterization of Enterococcus faecalis Isolates Recovered From the International Space Station and Their Potential for Pathogenicity
2021 StandoutNobel
Liquid biopsies come of age: towards implementation of circulating tumour DNA
2017 Standout
UALCAN: A Portal for Facilitating Tumor Subgroup Gene Expression and Survival Analyses
2017 Standout
Canu: scalable and accurate long-read assembly via adaptive k -mer weighting and repeat separation
2017 Standout
Genome engineering using the CRISPR-Cas9 system
2013 Standout
Plasmid Classification in an Era of Whole-Genome Sequencing: Application in Studies of Antibiotic Resistance Epidemiology
2017
A fatal outbreak of ST11 carbapenem-resistant hypervirulent Klebsiella pneumoniae in a Chinese hospital: a molecular epidemiological study
2017 Standout
Antibiotic resistance in the environment
2021 Standout
Fast and accurate de novo genome assembly from long uncorrected reads
2017 Standout
Silent transmission of an IS 1294b -deactivated mcr-1 gene with inducible colistin resistance
2018
Coming of age: ten years of next-generation sequencing technologies
2016 Standout
Sensitive protein alignments at tree-of-life scale using DIAMOND
2021 Standout
Assembly of long, error-prone reads using repeat graphs
2019 Standout
Real-time selective sequencing using nanopore technology
2016
Genome assembly using Nanopore-guided long and error-free DNA reads
2015
Improved data analysis for the MinION nanopore sequencer
2015
De novo design of a four-fold symmetric TIM-barrel protein with atomic-level accuracy
2015 StandoutNobel
DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets
2017 Standout
metaSPAdes: a new versatile metagenomic assembler
2017 Standout
New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures
2012
Cryo-EM structure of a type IV secretion system
2022 StandoutNatureNobel
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
2017 Standout
Exploring the structure and function paradigm
2008
A Fast Approximate Algorithm for Mapping Long Reads to Large Reference Databases
2018
Heterogeneous Genetic Location of mcr-1 in Colistin-Resistant Escherichia coli Isolates from Humans and Retail Chicken Meat in Switzerland: Emergence of mcr-1 -Carrying IncK2 Plasmids
2017
Minimap2: pairwise alignment for nucleotide sequences
2018 Standout
The IUPHAR/BPS Guide to PHARMACOLOGY in 2018: updates and expansion to encompass the new guide to IMMUNOPHARMACOLOGY
2017 Standout
On the Universe of Protein Folds
2013 StandoutNobel
MCR-1.6, a New MCR Variant Carried by an IncP Plasmid in a Colistin-Resistant Salmonella enterica Serovar Typhimurium Isolate from a Healthy Individual
2017
Antibiotic resistance in the food supply chain: where can sequencing and metagenomics aid risk assessment?
2017
Mobile Genetic Elements Associated with Antimicrobial Resistance
2018 Standout
Development of an Assay for the Identification of Receptor Binding Proteins from Bacteriophages
2016
Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
2012 Standout
Structure of a designed tetrahedral protein assembly variant engineered to have improved soluble expression
2015 StandoutNobel
DALI and the persistence of protein shape
2019
2015
Overcoming an optimization plateau in the directed evolution of highly efficient nerve agent bioscavengers
2017 StandoutNobel
Full-Length Nucleotide Sequences of mcr-1 -Harboring Plasmids Isolated from Extended-Spectrum-β-Lactamase-Producing Escherichia coli Isolates of Different Origins
2016
Synthetic biology for the directed evolution of protein biocatalysts: navigating sequence space intelligently
2014
One contact for every twelve residues allows robust and accurate topology‐level protein structure modeling
2013 StandoutNobel
UCSF ChimeraX: Meeting modern challenges in visualization and analysis
2017 Standout
Comparative Protein Structure Modeling Using MODELLER
2016 Standout
Classification of Intrinsically Disordered Regions and Proteins
2014 Standout
Computational design of environmental sensors for the potent opioid fentanyl
2017 StandoutNobel
Pre-calculated protein structure alignments at the RCSB PDB website
2010
LigPlot+: Multiple Ligand–Protein Interaction Diagrams for Drug Discovery
2011 Standout
Outbreak analytics: a developing data science for informing the response to emerging pathogens
2019
Networks of electrostatic and hydrophobic interactions modulate the complex folding free energy surface of a designed βα protein
2019 StandoutNobel
2020 Standout
A Phage-Like IncY Plasmid Carrying the mcr-1 Gene in Escherichia coli from a Pig Farm in China
2016
Third generation sequencing: technology and its potential impact on evolutionary biodiversity research
2015
InterProScan 5: genome-scale protein function classification
2014 Standout
Antimicrobial Resistance in ESKAPE Pathogens
2020 Standout
Works of Tim Dallman being referenced
The CATH Hierarchy Revisited—Structural Divergence in Domain Superfamilies and the Continuity of Fold Space
2009
CATHEDRAL: A Fast and Effective Algorithm to Predict Folds and Domain Boundaries from Multidomain Protein Structures
2007
Analysis of whole genome sequencing for the Escherichia coli O157:H7 typing phages
2015
Enteroaggregative E. coli O104 from an outbreak of HUS in Germany 2011, could it happen again?
2011
Detection of the plasmid-mediatedmcr-1gene conferring colistin resistance in human and food isolates ofSalmonella entericaandEscherichia coliin England and Wales
2016
MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island
2014
Characterization of a Verocytotoxin-Producing Enteroaggregative Escherichia coli Serogroup O111:H21 Strain Associated with a Household Outbreak in Northern Ireland
2012
Significance of whole genome sequencing for surveillance, source attribution and microbial risk assessment of foodborne pathogens
2016
Phylogenetic structure of European Salmonella Enteritidis outbreak correlates with national and international egg distribution network
2016