Citation Impact
Citing Papers
The opportunistic marine pathogen Vibrio parahaemolyticus becomes virulent by acquiring a plasmid that expresses a deadly toxin
2015 Standout
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
2012 Standout
Lysine Acetylation Targets Protein Complexes and Co-Regulates Major Cellular Functions
2009 StandoutScience
Protein structure determination using metagenome sequence data
2017 StandoutScienceNobel
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
2015 Standout
Intestinal Inflammation Targets Cancer-Inducing Activity of the Microbiota
2012 StandoutScience
The genome BLASTatlas—a GeneWiz extension for visualization of whole-genome homology
2008
Burkholderia pseudomallei genome plasticity associated with genomic island variation
2008
BIGSdb: Scalable analysis of bacterial genome variation at the population level
2010 Standout
Genome-wide features of neuroendocrine regulation in Drosophila by the basic helix-loop-helix transcription factor DIMMED
2015 StandoutNobel
Distinct temporal trends in breast cancer incidence from 1997 to 2016 by molecular subtypes: a population-based study of Scottish cancer registry data
2020
Global Cancer Statistics 2020: GLOBOCAN Estimates of Incidence and Mortality Worldwide for 36 Cancers in 185 Countries
2021 Standout
STRING v9.1: protein-protein interaction networks, with increased coverage and integration
2012 Standout
Open software for biologists: from famine to feast
2006
Circular RNAs are a large class of animal RNAs with regulatory potency
2013 StandoutNature
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
2012 Standout
Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
2016 Standout
The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function
2010 Standout
A scoutRNA Is Required for Some Type V CRISPR-Cas Systems
2020 StandoutNobel
Global trends in emerging infectious diseases
2008 StandoutNature
Iron behaving badly: inappropriate iron chelation as a major contributor to the aetiology of vascular and other progressive inflammatory and degenerative diseases
2009
Classification and evolution of type II CRISPR-Cas systems
2014 StandoutNobel
An RNA-seq based comparative approach reveals the transcriptome-wide interplay between 3′-to-5′ exoRNases and RNase Y
2020 StandoutNobel
Horizontal Gene Transfer from Diverse Bacteria to an Insect Genome Enables a Tripartite Nested Mealybug Symbiosis
2013 Standout
STRING v10: protein–protein interaction networks, integrated over the tree of life
2014 Standout
Viruses in the faecal microbiota of monozygotic twins and their mothers
2010 StandoutNature
The Genome Sequence of Trypanosoma brucei gambiense, Causative Agent of Chronic Human African Trypanosomiasis
2010
The Genome of Mycobacterium Africanum West African 2 Reveals a Lineage-Specific Locus and Genome Erosion Common to the M. tuberculosis Complex
2012
BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons
2011 Standout
Melioidosis
2012 Standout
Complete nitrification by Nitrospira bacteria
2015 StandoutNature
Whole‐genome analysis of the ammonia‐oxidizing bacterium, Nitrosomonas eutropha C91: implications for niche adaptation
2007
The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible
2016 Standout
Indigenous Bacteria from the Gut Microbiota Regulate Host Serotonin Biosynthesis
2015 Standout
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
2013 Standout
Metagenomic biomarker discovery and explanation
2011 Standout
Derivation of Escherichia coli O157:H7 from Its O55:H7 Precursor
2010
Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
2012 Standout
The CRISPR-associated DNA-cleaving enzyme Cpf1 also processes precursor CRISPR RNA
2016 StandoutNatureNobel
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
2013 Standout
RNA Guide Complementarity Prevents Self-Targeting in Type VI CRISPR Systems
2018
A jumbo phage that forms a nucleus-like structure evades CRISPR–Cas DNA targeting but is vulnerable to type III RNA-based immunity
2019
IMG: the integrated microbial genomes database and comparative analysis system
2011
Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
2010 Standout
The CGView Server: a comparative genomics tool for circular genomes
2008
The primary transcriptome of the major human pathogen Helicobacter pylori
2010 StandoutNature
Diet rapidly and reproducibly alters the human gut microbiome
2013 StandoutNature
High-throughput genome sequencing of two Listeria monocytogenes clinical isolates during a large foodborne outbreak
2010
Argonaute CLIP Defines a Deregulated miR-122-Bound Transcriptome that Correlates with Patient Survival in Human Liver Cancer
2017 StandoutNobel
Gain and Loss of Multiple Genes During the Evolution of Helicobacter pylori
2005
A thermostable Cas9 with increased lifetime in human plasma
2017 StandoutNobel
Fast gapped-read alignment with Bowtie 2
2012 Standout
Photorhabdus insect-related (Pir) toxin-like genes in a plasmid of Vibrio parahaemolyticus, the causative agent of acute hepatopancreatic necrosis disease (AHPND) of shrimp
2014
The Gaggle: An open-source software system for integrating bioinformatics software and data sources
2006
Melanoma-intrinsic β-catenin signalling prevents anti-tumour immunity
2015 StandoutNature
Chemistry of Class 1 CRISPR-Cas effectors: Binding, editing, and regulation
2020 StandoutNobel
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update
2016 Standout
A survey of sequence alignment algorithms for next-generation sequencing
2010
STRING 8--a global view on proteins and their functional interactions in 630 organisms
2008 Standout
The Biomolecular Interaction Network Database and related tools 2005 update
2004
Phage–bacteria relationships and CRISPR elements revealed by a metagenomic survey of the rumen microbiome
2011
Hepatitis C Virus RNA Functionally Sequesters miR-122
2015 StandoutNobel
Sulfatase-activated fluorophores for rapid discrimination of mycobacterial species and strains
2013 StandoutNobel
Nitrogen recycling and nutritional provisioning byBlattabacterium, the cockroach endosymbiont
2009
A Common Virulence Plasmid in Biotype 2 Vibrio vulnificus and Its Dissemination Aided by a Conjugal Plasmid
2007
Pivoting the Plant Immune System from Dissection to Deployment
2013 StandoutScience
Compact graphical representation of phylogenetic data and metadata with GraPhlAn
2015
Easyfig: a genome comparison visualizer
2011 Standout
GenomeDiagram: a python package for the visualization of large-scale genomic data
2005
The Citrobacter rodentium Genome Sequence Reveals Convergent Evolution with Human Pathogenic Escherichia coli
2009
GeneWiz browser: An Interactive Tool for Visualizing Sequenced Chromosomes
2009
A Bioinformatician's Guide to Metagenomics
2008
Combo: a whole genome comparative browser
2006
Programmed DNA destruction by miniature CRISPR-Cas14 enzymes
2018 StandoutScienceNobel
Infectious Diseases: Preparing for the Future
2006 Science
Fluorescent Sensors for Measuring Metal Ions in Living Systems
2014 Standout
genoPlotR: comparative gene and genome visualization in R
2010
Genetic Structure and Distribution of the Colibactin Genomic Island among Members of the Family Enterobacteriaceae
2009
REAPR: a universal tool for genome assembly evaluation
2013
Multiple antibiotic resistance gene recruitment onto the enterohemorrhagic Escherichia coli virulence plasmid
2009
Mobyle: a new full web bioinformatics framework
2009
Identification of Wheat Gene Sr35 That Confers Resistance to Ug99 Stem Rust Race Group
2013 Science
Trimmomatic: a flexible trimmer for Illumina sequence data
2014 Standout
GeneWiz browser: An Interactive Tool for Visualizing Sequenced Chromosomes
2009
Works of Tim Carver being referenced
BOADICEA: a comprehensive breast cancer risk prediction model incorporating genetic and nongenetic risk factors
2019
ACT: the Artemis comparison tool
2005
Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database
2008
BamView: viewing mapped read alignment data in the context of the reference sequence
2010
Taverna: a tool for the composition and enactment of bioinformatics workflows
2004
DNAPlotter: circular and linear interactive genome visualization
2008
Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data
2011