Standout Papers

The Amber biomolecular simulation programs 1995 2026 2005 2015 7.3k
  1. The Amber biomolecular simulation programs (2005)
    David A. Case, Thomas E. Cheatham et al. Journal of Computational Chemistry
  2. PTRAJ and CPPTRAJ: Software for Processing and Analysis of Molecular Dynamics Trajectory Data (2013)
    Daniel R. Roe, Thomas E. Cheatham Journal of Chemical Theory and Computation
  3. Calculating Structures and Free Energies of Complex Molecules:  Combining Molecular Mechanics and Continuum Models (2000)
    Peter A. Kollman, Irina Massova et al. Accounts of Chemical Research
  4. Determination of Alkali and Halide Monovalent Ion Parameters for Use in Explicitly Solvated Biomolecular Simulations (2008)
    In Suk Joung, Thomas E. Cheatham The Journal of Physical Chemistry B
  5. AMBER, a package of computer programs for applying molecular mechanics, normal mode analysis, molecular dynamics and free energy calculations to simulate the structural and energetic properties of molecules (1995)
    David A. Pearlman, David A. Case et al. Computer Physics Communications
  6. Refinement of the AMBER Force Field for Nucleic Acids: Improving the Description of α/γ Conformers (2007)
    Alberto Pérez, Daniel Svozil et al. Biophysical Journal
  7. Continuum Solvent Studies of the Stability of DNA, RNA, and Phosphoramidate−DNA Helices (1998)
    Jayashree Srinivasan, Thomas E. Cheatham et al. Journal of the American Chemical Society
  8. A Modified Version of the Cornellet al.Force Field with Improved Sugar Pucker Phases and Helical Repeat (1999)
    Thomas E. Cheatham, Piotr Cieplak et al. Journal of Biomolecular Structure and Dynamics
  9. Refinement of the Cornell et al. Nucleic Acids Force Field Based on Reference Quantum Chemical Calculations of Glycosidic Torsion Profiles (2011)
    Marie Zgarbová, Michal Otyepka et al. Journal of Chemical Theory and Computation
  10. Molecular Dynamics Simulations on Solvated Biomolecular Systems: The Particle Mesh Ewald Method Leads to Stable Trajectories of DNA, RNA, and Proteins (1995)
    Thomas E. Cheatham, Jennifer L. Miller et al. Journal of the American Chemical Society
  11. Clustering Molecular Dynamics Trajectories: 1. Characterizing the Performance of Different Clustering Algorithms (2007)
    Jianyin Shao, Stephen Tanner et al. Journal of Chemical Theory and Computation
  12. Molecular Dynamics Simulations of the Dynamic and Energetic Properties of Alkali and Halide Ions Using Water-Model-Specific Ion Parameters (2009)
    In Suk Joung, Thomas E. Cheatham The Journal of Physical Chemistry B
  13. Refinement of the Sugar–Phosphate Backbone Torsion Beta for AMBER Force Fields Improves the Description of Z- and B-DNA (2015)
    Marie Zgarbová, Jiřı́ Šponer et al. Journal of Chemical Theory and Computation
  14. Assessing the Current State of Amber Force Field Modifications for DNA (2016)
    Rodrigo Galindo‐Murillo, J.C. Robertson et al. Journal of Chemical Theory and Computation

Immediate Impact

16 by Nobel laureates 21 from Science/Nature 191 standout
Sub-graph 1 of 17

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1 intermediate paper

Works of Thomas E. Cheatham being referenced

The Amber biomolecular simulation programs
2005 Standout
Molecular Dynamics Simulations on Solvated Biomolecular Systems: The Particle Mesh Ewald Method Leads to Stable Trajectories of DNA, RNA, and Proteins
1995 Standout
and 2 more

Author Peers

Author Last Decade Papers Cites
Thomas E. Cheatham 28408 2215 121 4777 3823 165 37.9k
Piotr Cieplak 26032 1025 14 7212 3809 124 40.4k
Carlos Simmerling 20452 748 16 5133 3490 106 27.5k
Darrin M. York 20475 842 14 6101 2645 249 34.5k
Barry Honig 37023 1245 11 8921 3734 346 50.5k
David E. Shaw 26948 558 53 5621 6644 258 38.6k
Lee G. Pedersen 28653 1142 42 8517 3370 222 49.3k
Alan E. Mark 26315 920 8 7895 3050 240 43.1k
Helen M. Berman 36404 1753 159 10080 7230 241 48.2k
Christopher I. Bayly 17258 543 21 5636 3883 75 28.4k
Wonpil Im 19541 984 7 2587 1895 309 26.2k

All Works

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Rankless by CCL
2026