Citation Impact
Citing Papers
RepeatModeler2 for automated genomic discovery of transposable element families
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Endogenous and Silencing-Associated Small RNAs in Plants[W]
2002
Caenorhabditis elegans ADAR editing and the ERI-6/7/MOV10 RNAi pathway silence endogenous viral elements and LTR retrotransposons
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Genome-wide comparative analysis of the transposable elements in the related species Arabidopsis thaliana and Brassica oleracea
2004
Positional cloning of the wheat vernalization gene VRN1
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P instability factor: An active maize transposon system associated with the amplification of Tourist -like MITEs and a new superfamily of transposases
2001
Regulation of Heterochromatic Silencing and Histone H3 Lysine-9 Methylation by RNAi
2002 StandoutScience
LTR_STRUC: a novel search and identification program for LTR retrotransposons
2003
Plant transposable elements: where genetics meets genomics
2002
Using bioinformatic and phylogenetic approaches to classify transposable elements and understand their complex evolutionary histories
2017
Ten things you should know about transposable elements
2018
Schizophrenia risk from complex variation of complement component 4
2016 StandoutNature
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
2000 StandoutNature
Assessing the genomic evidence for conserved transcribed pseudogenes under selection
2009
Finishing the euchromatic sequence of the human genome
2004 StandoutNature
The diversity of LTR retrotransposons.
2004
lincRNAs: Genomics, Evolution, and Mechanisms
2013 Standout
Genome-wide comparative analysis of copia retrotransposons in Triticeae, rice, and Arabidopsis reveals conserved ancient evolutionary lineages and distinct dynamics of individual copia families
2007
Abiotic Stress Signaling and Responses in Plants
2016 Standout
Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline
2019
PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences
2002 Standout
Rice Transposable Elements: A Survey of 73,000 Sequence-Tagged-Connectors
2000
MicroRNAs
2004 Standout
The nuclear RNase III Drosha initiates microRNA processing
2003 StandoutNature
A Tourist element in the 5′-flanking region of the catalase gene CatA reveals evolutionary relationships among Oryza species with various genome types
1999
Many or most genes in Arabidopsis transposed after the origin of the order Brassicales
2008
MUT-16 promotes formation of perinuclear Mutator foci required for RNA silencing in the C. elegans germline
2012 StandoutNobel
Systematic functional analysis of the Caenorhabditis elegans genome using RNAi
2003 StandoutNature
Computational and Experimental Analysis of Microsatellites in Rice (Oryza sativa L.): Frequency, Length Variation, Transposon Associations, and Genetic Marker Potential
2001
MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences
2010
Only those genes of the KIAA1245 gene subfamily that contain HERV(K) LTRs in their introns are transcriptionally active
2006
Life without GAG: The BARE-2 retrotransposon as a parasite's parasite
2006
Biogenesis of Bacterial Cellulose
1991
Abundance, distribution and dynamics of retrotransposable elements and transposons: similarities and differences
2005
Local, Efflux-Dependent Auxin Gradients as a Common Module for Plant Organ Formation
2003 Standout
Insight into tubulin regulation from a complex with colchicine and a stathmin-like domain
2004 StandoutNature
Functional siRNAs and miRNAs Exhibit Strand Bias
2003 Standout
The hAT family: a versatile transposon group common to plants, fungi, animals, and man
2001
Parasitism and the retrotransposon life cycle in plants: a hitchhiker's guide to the genome
2006
Prediction of Plant MicroRNA Targets
2002 Standout
An active DNA transposon family in rice
2003 Nature
Variability, Recombination, and Mosaic Evolution of the Barley BARE-1 Retrotransposon
2005
Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice
2006 StandoutNature
The surveillance of pre-mRNA splicing is an early step in C. elegans RNAi of endogenous genes
2018 StandoutNobel
Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize
2005
LTR retrotransposons and flowering plant genome size: emergence of the increase/decrease model
2005
Highly abundant pea LTR retrotransposon Ogre is constitutively transcribed and partially spliced
2003
MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
2012 Standout
Plant pathogens and integrated defence responses to infection
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A Dicer-like protein in Tetrahymena has distinct functions in genome rearrangement, chromosome segregation, and meiotic prophase
2004
Origin, Biogenesis, and Activity of Plant MicroRNAs
2009 Standout
Sequence rearrangement in the AT-rich minisatellite of the novel rice transposable elementBasho
2002
Dual coding of siRNAs and miRNAs by plant transposable elements
2008
Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis
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RNA silencing in plants
2004 StandoutNature
Analysis of a contiguous 211 kb sequence in diploid wheat (Triticum monococcum L.) reveals multiple mechanisms of genome evolution
2001
Epigenetic silencing of plant transgenes as a consequence of diverse cellular defence responses
1998
Long terminal repeat retrotransposons of Oryza sativa
2002
bantam Encodes a Developmentally Regulated microRNA that Controls Cell Proliferation and Regulates the Proapoptotic Gene hid in Drosophila
2003 Standout
Insights into social insects from the genome of the honeybee Apis mellifera
2006 StandoutNature
The small RNA repertoire of Dictyostelium discoideum and its regulation by components of the RNAi pathway
2007 StandoutNobel
A Mechanism for Sustained Cellulose Synthesis during Salt Stress
2015
RNA-Seq: a revolutionary tool for transcriptomics
2008 Standout
Pack-MULE transposable elements mediate gene evolution in plants
2004 Nature
The genomic ecosystem of transposable elements in maize
2021
Interactions of colchicine with tubulin
1991
Transposable elements, gene creation and genome rearrangement in flowering plants
2005
LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons
2007 Standout
The Automatic Detection of Homologous Regions (ADHoRe) and Its Application to Microcolinearity Between Arabidopsis and Rice
2002
Comparative analysis of BAC and whole genome shotgun sequences from an Anopheles gambiae region related to Plasmodium encapsulation
2005
Human DNA methylomes at base resolution show widespread epigenomic differences
2009 StandoutNature
Mapping and quantifying mammalian transcriptomes by RNA-Seq
2008 Standout
Cellulose: Fascinating Biopolymer and Sustainable Raw Material
2005 Standout
Impact of Preexisting and Induced Humoral and Cellular Immune Responses in an Adenovirus-Based Gene Therapy Phase I Clinical Trial for Localized Mesothelioma
1998
Seeding “one-dimensional crystallization” of amyloid: A pathogenic mechanism in Alzheimer's disease and scrapie?
1993 Standout
Mobilization of a transposon in the rice genome
2003 Nature
Transposable elements, genes and recombination in a 215-kb contig from wheat chromosome 5Am
2002
Using rice to understand the origin and amplification of miniature inverted repeat transposable elements (MITEs)
2004
Mosaic Organization of Orthologous Sequences in Grass Genomes
2002
Plant genome organisation and diversity: the year of the junk!
2006
Evidence that a Family of Miniature Inverted-Repeat Transposable Elements (MITEs) from the Arabidopsis thaliana Genome Has Arisen from a pogo-like DNA Transposon
2000
A unified classification system for eukaryotic transposable elements
2007 Standout
CACTA Transposons in Triticeae. A Diverse Family of High-Copy Repetitive Elements
2003
The map-based sequence of the rice genome
2005 StandoutNature
Transposable Elements in Filamentous Fungi
2003
The Major Resistance Gene Cluster in Lettuce Is Highly Duplicated and Spans Several Megabases
1998
Helitrons , the Eukaryotic Rolling-circle Transposable Elements
2015
LTR_retriever: A Highly Accurate and Sensitive Program for Identification of Long Terminal Repeat Retrotransposons
2017
Function of the p86 subunit of eukaryotic initiation factor (iso)4F as a microtubule-associated protein in plant cells.
1995
Targeted and Equally Distributed Delivery of mRNA to Organs with Pentaerythritol-Based One-Component Ionizable Amphiphilic Janus Dendrimers
2023 StandoutNobel
Role of MicroRNAs in Plant and Animal Development
2003 StandoutScienceNobel
Large Retrotransposon Derivatives: Abundant, Conserved but Nonautonomous Retroelements of Barley and Related Genomes
2004
Distribution, diversity, evolution, and survival of Helitrons in the maize genome
2009
Active Transposition in Genomes
2012
Genome sequencing and analysis of the model grass Brachypodium distachyon
2010 StandoutNature
Genome evolution in polyploids
2000
Short RNAs Can Identify New Candidate Transposable Element Families in Arabidopsis
2002
DashengandRIRE2. A Nonautonomous Long Terminal Repeat Element and Its Putative Autonomous Partner in the Rice Genome
2002
A novel translational repressor mRNA is edited extensively in livers containing tumors caused by the transgene expression of the apoB mRNA-editing enzyme.
1997 StandoutNobel
DNA Transposons and the Evolution of Eukaryotic Genomes
2007
Developmental expression of the arabidopsis cyclin gene cyc1At.
1994
Different Types and Rates of Genome Evolution Detected by Comparative Sequence Analysis of Orthologous Segments From Four Cereal Genomes
2002
RNA as a target of double-stranded RNA-mediated genetic interference in Caenorhabditis elegans
1998 StandoutNobel
Rapid Infection of Oral Mucosal-Associated Lymphoid Tissue with Simian Immunodeficiency Virus
1999 StandoutScienceNobel
Arabidopsis Transcription Factors: Genome-Wide Comparative Analysis Among Eukaryotes
2000 StandoutScience
Comparative Sequence Analysis of Colinear Barley and Rice Bacterial Artificial Chromosomes
2001
Structure-based discovery and description of plant and animal Helitrons
2009
Nonviral Vectors for The Delivery of Small Interfering RNAs to The CNS
2010
Gene movement by Helitron transposons contributes to the haplotype variability of maize
2005
Structural Dynamics of Eukaryotic Chromosome Evolution
2003 StandoutScience
Human DNA Repair Genes
2001 StandoutScienceNobel
Dasheng: A Recently Amplified Nonautonomous Long Terminal Repeat Element That Is a Major Component of Pericentromeric Regions in Rice
2002
Mariner -like transposases are widespread and diverse in flowering plants
2001
Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
2003 StandoutNobel
Plant Retrotransposons
1999
Transposable elements as sources of variation in animals and plants
1997
Genome-Wide Analysis of mariner-Like Transposable Elements in Rice Reveals Complex Relationships With Stowaway Miniature Inverted Repeat Transposable Elements (MITEs)
2003
Continuous Exchange of Sequence Information Between Dispersed Tc1 Transposons in the Caenorhabditis elegans Genome
2003
Works of Thomas E. Bureau being referenced
Terminal-repeat retrotransposons in miniature (TRIM) are involved in restructuring plant genomes
2001
A Novel Hybrid Open Reading Frame Formed by Multiple Cellular Gene Transductions by a Plant Long Terminal Repeat Retroelement
2001
MUSTANG Is a Novel Family of Domesticated Transposase Genes Found in Diverse Angiosperms
2005
Effects of Recombination Rate and Gene Density on Transposable Element Distributions in Arabidopsis thaliana
2003
Transposable element annotation of the rice genome
2004
Exaptation of transposable element coding sequences
2018
Oryzalin, a dinitroaniline herbicide, binds to plant tubulin and inhibits microtubule polymerization in vitro
1987
Transposon-Mediated Expansion and Diversification of a Family of ULP-like Genes
2006
Identification and characterization of 14 transposon-like elements in the noncoding regions of members of the Xa21 family of disease resistance genes in rice
1998
The evolutionary fate of MULE-mediated duplications of host gene fragments in rice
2005
Survey of transposable elements from rice genomic sequences
2001
Resistance of Rosa microtubule polymerization to colchicine results from a low-affinity interaction of colchicine and tubulin
1987
A call for benchmarking transposable element annotation methods
2015
Mobile inverted-repeat elements of the Tourist familyare associated with the genes of many cereal grasses.
1994
Transposon diversity in Arabidopsis thaliana
2000
Tourist: a large family of small inverted repeat elements frequently associated with maize genes.
1992
Stowaway: A New Family of Inverted Repeat Elements Associated with the Genes of Both Monocotyledonous and Dicotyledonous Plants
1994
Population Dynamics of anAc-like Transposable Element in Self- and Cross-Pollinating Arabidopsis
2001
A computer-based systematic survey reveals the predominance of small inverted-repeat elements in wild-type rice genes.
1996
Tubulins from different higher plant species are immunologically nonidentical and bind colchicine differentially
1984
Stowaway: a new family of inverted repeat elements associated with the genes of both monocotyledonous and dicotyledonous plants.
1994
Tc8, a Tourist-like Transposon in Caenorhabditis elegans
2001
In vitro synthesis of cellulose II from a cytoplasmic membrane fraction of Acetobacter xylinum
1987
Transposon-mediated chromosomal rearrangements and gene duplications in the formation of the maize R-r complex.
1995
Mutator-like Elements inArabidopsis thaliana: Structure, Diversity and Evolution
2000